Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0019784

Physical Location & Seq

Genomic Coordinates Reverse (-)

26951213 .. 26951654

Gene Structure 442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1188800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGGTAGCTTGGGTTCATTACTTGCATTCACCTCCCGTGATGACGTTGACTTCTTTTCTCACTTGGAGATGTATATGAGGCAGGAGCATCCACCTTTGTGTGGTAGAGATCACATGGCTTATAGATCAGCGTATTTCCCAGTCAAGGATGTGATTGATGGAGATCTGTGTGAGCAGTTCCCAACATTGCCCATGGATCTGCAGAGAAAAATTGCGGATGAGTTGGATAGAACTCCTGGAGAGATACTGAAGAAACTCGAGGAGATTCGAAACAAGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

95

Amino Acids

10.92

Weight (kDa)

5.05

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF_A	PF03178	1 - 60	1.1e-19	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019784)

Species	Orthologous Gene IDs
malus_domestica	MD07G1188800.v1.1
rosa_multiflora	Rmu_sc0000831.1_g000022 Rmu_sc0007491.1_g000001
rosa_rugosa	Rorug03G0255000
rosa_samantha	Rh1BG291600 Rh1CG308200 Rh1DG323300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	101, 145
AjnI	CCWGG	1 cut(s)	235
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	22
AsuII	TTCGAA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	257
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 145
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	185
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	88, 154, 223
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	101, 145
BseMI	GCAATG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	101, 145
BsmI	GAATGC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	268
Bsp143I	GATC	5 cut(s)	109, 125, 163, 196, 276
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	5 cut(s)	109, 125, 163, 196, 276
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	3 cut(s)	88, 154, 223
BstKTI	GATC	5 cut(s)	112, 128, 166, 199, 279
BstMBI	GATC	5 cut(s)	109, 125, 163, 196, 276
BstNI	CCWGG	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	163, 196
BstYI	RGATCY	2 cut(s)	163, 196
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	88, 154, 223
CviAII	CATG	2 cut(s)	115, 193
CviJI	RGCY	2 cut(s)	9, 119
CviKI_1	RGCY	2 cut(s)	9, 119
DpnI	GATC	5 cut(s)	111, 127, 165, 198, 278
DpnII	GATC	5 cut(s)	109, 125, 163, 196, 276
Eco130I	CCWWGG	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	118, 196
FaiI	YATR	5 cut(s)	75, 77, 116, 123, 194
FatI	CATG	2 cut(s)	114, 192
FokI	GGATG	3 cut(s)	75, 161, 230
GsuI	CTGGAG	1 cut(s)	258
Hin1II	CATG	2 cut(s)	118, 196
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	265
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	26, 202
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	118, 196
Kzo9I	GATC	5 cut(s)	109, 125, 163, 196, 276
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	4 cut(s)	68, 153, 222, 249
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	45
MalI	GATC	5 cut(s)	111, 127, 165, 198, 278
MboI	GATC	5 cut(s)	109, 125, 163, 196, 276
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	2 cut(s)	163, 196
MluCI	AATT	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	43, 72, 253
MseI	TTAA	1 cut(s)	283
MslI	CAYNNNNRTG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	5 cut(s)	109, 125, 163, 196, 276
NlaIII	CATG	2 cut(s)	118, 196
NspV	TTCGAA	1 cut(s)	268
OliI	CACNNNNGTG	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	257
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	265
PfoI	TCCNGGA	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspXI	VCTCGAGB	1 cut(s)	257
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	2 cut(s)	163, 196
RseI	CAYNNNNRTG	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	283
Sau3AI	GATC	5 cut(s)	109, 125, 163, 196, 276
ScrFI	CCNGG	1 cut(s)	237
SetI	ASST	4 cut(s)	11, 35, 48, 97
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	200
Sfr274I	CTCGAG	1 cut(s)	257
SfuI	TTCGAA	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	258, 268
TasI	AATT	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TspDTI	ATGAA	1 cut(s)	6
XhoI	CTCGAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.