Rmu_sc0007491.1_g000001

Splicing factor 3B subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007491.1
Physical Location & Seq
Forward (+)
1 .. 1905
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007491.1_g000001.1.cds

Sequence Viewer

Length: 1231 bp
caccgcagaagagcgtgaagctgcaaaaaaggagtgctttgaggctgcagaactaggtgaaaatggaaatggtaatgttgaacagatggaaaatggtgatactgaggatgaccccctatctgatgaacattatggctatcctaaggcagagtctgacaaatgggtttcttgcattcgagttcttgacccaaagacagcaactaccacctgtttgctggagcttcttgataacgaggccgcattcagtgtatgtacagtgaattttcatgataaggagtacggtacacttttggctgtgggtactgctaagggacttcaattttggcccaagaaaagtataactgcaggatatattcacgtatatcgatttctagatgatggaaagtcccttgaacttttgcacaagacacaagtggatggtgttcctcttgctttatgtcagtttcaaggaaggttactcgcagggataggaccagtgctcagactatatgatttggggaagaaaagactgcttaggaaatgtgaaaataagctgtttcccaacaatatcgtatccattcaaacgtatcgtgatcgaatttacgtaggtgacattcaagagtcattccactactgcaagtataggcggggtgagaatcagctgtatatatttgctgatgattgtgttcaaagatggcttacagaatcattccatatagattttgacaccatggcaggtgcggacaagtttggaaatgtgtattttgtgcggttaccacaggatgtttcagatgagatagaagaagatcaaacaggtggaaggataaaatgggagcaggggaagttgaatggcgcccccaacaaagtagaggagatagtgcagtttcatgttggtgatgtgggcagctgcttgcagaaggcatctctcattccaggtggtggtgagtgcatcatttatgggacagtgatgggtagtttgggtgcattgcttgctttcacctcccgtgatgatgttgacttcttttctcacctggagatgtatatgaggcaagaacatccccccttgtgtggaagagatcacatggcttacagatcagcttattttccggttaaggatgttattgatggggatctatgtgagcagtacccaacattgcctatggatctgcagagaaaaattgcagatgagttggacagaactcctggagagatactgaagaaacttgaggaaattcgaaataagatcatttaa

Protein Analysis

409

Amino Acids

46.31

Weight (kDa)

4.99

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019784)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 705
Acc36I ACCTGC 1 cut(s) 705
AccB1I GGYRCC 1 cut(s) 831
AccB7I CCANNNNNTGG 1 cut(s) 918
AciI CCGC 5 cut(s) 4, 238, 626, 720, 749
AclWI GGATC 2 cut(s) 1117, 1150
AcsI RAATTY 3 cut(s) 260, 577, 1210
AcuI CTGAAG 1 cut(s) 1215
AcyI GRCGYC 1 cut(s) 832
AfaI GTAC 5 cut(s) 254, 279, 284, 302, 1125
AfiI CCNNNNNNNGG 2 cut(s) 918, 1047
AgsI TTSAA 8 cut(s) 81, 318, 393, 447, 561, 597, 669, 827
AjnI CCWGG 3 cut(s) 911, 1009, 1181
AluBI AGCT 6 cut(s) 21, 221, 533, 641, 886, 1077
AluI AGCT 6 cut(s) 21, 221, 533, 641, 886, 1077
Alw21I GWGCWC 1 cut(s) 481
AlwI GGATC 2 cut(s) 1117, 1150
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 2 cut(s) 235, 324
ApeKI GCWGC 4 cut(s) 21, 45, 883, 886
ApoI RAATTY 3 cut(s) 260, 577, 1210
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
AspLEI GCGC 1 cut(s) 834
AspS9I GGNCC 2 cut(s) 325, 471
AsuHPI GGTGA 8 cut(s) 69, 108, 600, 642, 885, 933, 968, 999
AsuII TTCGAA 1 cut(s) 1214
AvaII GGWCC 1 cut(s) 471
AxyI CCTNAGG 1 cut(s) 142
BanI GGYRCC 1 cut(s) 831
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 4 cut(s) 8, 32, 873, 895
BccI CCATC 6 cut(s) 80, 372, 411, 667, 941, 1098
BciT130I CCWGG 3 cut(s) 913, 1011, 1183
BciVI GTATCC 1 cut(s) 563
BfaI CTAG 2 cut(s) 54, 372
BfmI CTRYAG 3 cut(s) 46, 343, 1146
BfoI RGCGCY 1 cut(s) 835
BfuAI ACCTGC 1 cut(s) 705
BfuI GTATCC 1 cut(s) 563
BisI GCNGC 5 cut(s) 22, 46, 238, 884, 887
BlsI GCNGC 5 cut(s) 23, 47, 239, 885, 888
Bme1390I CCNGG 3 cut(s) 913, 1011, 1183
Bme18I GGWCC 1 cut(s) 471
BmgT120I GGNCC 2 cut(s) 325, 471
BmiI GGNNCC 1 cut(s) 833
BmrFI CCNGG 3 cut(s) 913, 1011, 1183
BmsI GCATC 2 cut(s) 909, 937
BpmI CTGGAG 3 cut(s) 237, 1032, 1204
Bpu10I CCTNAGC 2 cut(s) 307, 513
Bpu14I TTCGAA 1 cut(s) 1214
BpuEI CTTGAG 1 cut(s) 1224
Bsa29I ATCGAT 1 cut(s) 365
BsaAI YACGTR 2 cut(s) 359, 584
BsaBI GATNNNNATC 1 cut(s) 1108
BsaHI GRCGYC 1 cut(s) 832
BsaJI CCNNGG 1 cut(s) 709
BsaWI WCCGGW 1 cut(s) 1085
Bsc4I CCNNNNNNNGG 2 cut(s) 918, 1047
Bse1I ACTGG 1 cut(s) 474
Bse21I CCTNAGG 1 cut(s) 142
Bse3DI GCAATG 2 cut(s) 963, 1131
Bse8I GATNNNNATC 1 cut(s) 1108
BseBI CCWGG 3 cut(s) 913, 1011, 1183
BseCI ATCGAT 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 709
BseGI GGATG 5 cut(s) 113, 422, 767, 1034, 1100
BseJI GATNNNNATC 1 cut(s) 1108
BseLI CCNNNNNNNGG 2 cut(s) 918, 1047
BseMI GCAATG 2 cut(s) 963, 1131
BseMII CTCAG 2 cut(s) 94, 494
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 864
BseXI GCAGC 4 cut(s) 8, 32, 873, 895
BsgI GTGCAG 1 cut(s) 879
BshFI GGCC 2 cut(s) 237, 326
BshNI GGYRCC 1 cut(s) 831
BshVI ATCGAT 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 1086
BslFI GGGAC 3 cut(s) 325, 371, 953
BslI CCNNNNNNNGG 2 cut(s) 918, 1047
BsmFI GGGAC 3 cut(s) 325, 371, 953
BsmI GAATGC 2 cut(s) 172, 240
BsnI GGCC 2 cut(s) 237, 326
Bsp119I TTCGAA 1 cut(s) 1214
Bsp1286I GDGCHC 1 cut(s) 481
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
Bsp19I CCATGG 1 cut(s) 709
BspACI CCGC 5 cut(s) 4, 238, 626, 720, 749
BspANI GGCC 2 cut(s) 237, 326
BspCNI CTCAG 2 cut(s) 95, 493
BspDI ATCGAT 1 cut(s) 365
BspHI TCATGA 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 833
BspMAI CTGCAG 3 cut(s) 50, 347, 1150
BspMI ACCTGC 1 cut(s) 705
BspPI GGATC 2 cut(s) 1117, 1150
BspQI GCTCTTC 1 cut(s) 4
BspT104I TTCGAA 1 cut(s) 1214
BspT107I GGYRCC 1 cut(s) 831
BsrDI GCAATG 2 cut(s) 963, 1131
BsrGI TGTACA 1 cut(s) 252
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 1 cut(s) 709
BssMI GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
BssNI GRCGYC 1 cut(s) 832
BssT1I CCWWGG 1 cut(s) 709
Bst2UI CCWGG 3 cut(s) 913, 1011, 1183
Bst4CI ACNGT 3 cut(s) 257, 282, 944
Bst6I CTCTTC 2 cut(s) 4, 1046
BstACI GRCGYC 1 cut(s) 832
BstAPI GCANNNNNTGC 1 cut(s) 969
BstAUI TGTACA 1 cut(s) 252
BstBAI YACGTR 2 cut(s) 359, 584
BstBI TTCGAA 1 cut(s) 1214
BstC8I GCNNGC 2 cut(s) 891, 970
BstDEI CTNAG 5 cut(s) 103, 142, 307, 480, 513
BstDSI CCRYGG 1 cut(s) 709
BstEII GGTNACC 1 cut(s) 751
BstF5I GGATG 5 cut(s) 113, 422, 767, 1034, 1100
BstH2I RGCGCY 1 cut(s) 835
BstHHI GCGC 1 cut(s) 834
BstKTI GATC 7 cut(s) 575, 788, 1058, 1074, 1112, 1145, 1225
BstMBI GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
BstMWI GCNNNNNNNGC 1 cut(s) 969
BstNI CCWGG 3 cut(s) 913, 1011, 1183
BstPI GGTNACC 1 cut(s) 751
BstSCI CCNGG 3 cut(s) 911, 1009, 1181
BstSFI CTRYAG 3 cut(s) 46, 343, 1146
BstSNI TACGTA 1 cut(s) 584
BstV1I GCAGC 4 cut(s) 8, 32, 873, 895
BstX2I RGATCY 2 cut(s) 1109, 1142
BstYI RGATCY 2 cut(s) 1109, 1142
Bsu15I ATCGAT 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 142
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 237, 326
BsuTUI ATCGAT 1 cut(s) 365
BtgI CCRYGG 1 cut(s) 709
BtsCI GGATG 5 cut(s) 113, 422, 767, 1034, 1100
BtsIMutI CAGTG 4 cut(s) 251, 262, 481, 949
BveI ACCTGC 1 cut(s) 705
Cac8I GCNNGC 2 cut(s) 891, 970
CaiI CAGNNNCTG 1 cut(s) 153
CciI TCATGA 1 cut(s) 266
CfoI GCGC 1 cut(s) 834
Cfr13I GGNCC 2 cut(s) 325, 471
ClaI ATCGAT 1 cut(s) 365
Csp6I GTAC 5 cut(s) 253, 278, 283, 301, 1124
CviAII CATG 4 cut(s) 267, 710, 867, 1061
CviQI GTAC 5 cut(s) 253, 278, 283, 301, 1124
DdeI CTNAG 5 cut(s) 103, 142, 307, 480, 513
DinI GGCGCC 1 cut(s) 833
DpnI GATC 7 cut(s) 574, 787, 1057, 1073, 1111, 1144, 1224
DpnII GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
Eam1104I CTCTTC 2 cut(s) 4, 1046
EarI CTCTTC 2 cut(s) 4, 1046
Eco105I TACGTA 1 cut(s) 584
Eco130I CCWWGG 1 cut(s) 709
Eco47I GGWCC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 1215
Eco81I CCTNAGG 1 cut(s) 142
Eco91I GGTNACC 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 751
EcoRII CCWGG 3 cut(s) 911, 1009, 1181
EcoT14I CCWWGG 1 cut(s) 709
EgeI GGCGCC 1 cut(s) 833
EheI GGCGCC 1 cut(s) 833
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 4 cut(s) 270, 713, 870, 1064
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 3 cut(s) 325, 371, 953
FatI CATG 4 cut(s) 266, 709, 866, 1060
FauI CCCGC 1 cut(s) 619
Fnu4HI GCNGC 5 cut(s) 22, 46, 238, 884, 887
FokI GGATG 5 cut(s) 120, 429, 774, 1021, 1107
Fsp4HI GCNGC 5 cut(s) 22, 46, 238, 884, 887
FspBI CTAG 2 cut(s) 54, 372
GlaI GCGC 1 cut(s) 833
GluI GCNGC 5 cut(s) 22, 46, 238, 884, 887
GsuI CTGGAG 3 cut(s) 237, 1032, 1204
HaeII RGCGCY 1 cut(s) 835
HaeIII GGCC 2 cut(s) 237, 326
HapII CCGG 1 cut(s) 1086
HhaI GCGC 1 cut(s) 834
Hin1I GRCGYC 1 cut(s) 832
Hin1II CATG 4 cut(s) 270, 713, 870, 1064
Hin6I GCGC 1 cut(s) 832
HinP1I GCGC 1 cut(s) 832
HincII GTYRAC 1 cut(s) 995
HindII GTYRAC 1 cut(s) 995
HinfI GANTC 4 cut(s) 150, 600, 635, 684
HpaII CCGG 1 cut(s) 1086
HphI GGTGA 8 cut(s) 69, 108, 600, 642, 885, 933, 968, 999
Hpy166II GTNNAC 2 cut(s) 285, 995
Hpy188I TCNGA 4 cut(s) 122, 155, 483, 770
Hpy188III TCNNGA 6 cut(s) 183, 225, 267, 372, 570, 597
Hpy8I GTNNAC 2 cut(s) 285, 995
HpyAV CCTTC 3 cut(s) 445, 793, 890
HpyCH4III ACNGT 3 cut(s) 257, 282, 944
HpyCH4IV ACGT 3 cut(s) 358, 564, 583
HpyF10VI GCNNNNNNNGC 1 cut(s) 969
HpyF3I CTNAG 5 cut(s) 103, 142, 307, 480, 513
HpySE526I ACGT 3 cut(s) 358, 564, 583
Hsp92I GRCGYC 1 cut(s) 832
Hsp92II CATG 4 cut(s) 270, 713, 870, 1064
HspAI GCGC 1 cut(s) 832
KasI GGCGCC 1 cut(s) 831
Kzo9I GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
LguI GCTCTTC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 218, 812
Lsp1109I GCAGC 4 cut(s) 8, 32, 873, 895
LweI GCATC 2 cut(s) 909, 937
MaeI CTAG 2 cut(s) 54, 372
MaeII ACGT 3 cut(s) 358, 564, 583
MaeIII GTNAC 3 cut(s) 454, 588, 751
MalI GATC 7 cut(s) 574, 787, 1057, 1073, 1111, 1144, 1224
MboI GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
MboII GAAGA 6 cut(s) 21, 512, 792, 795, 1063, 1208
MflI RGATCY 2 cut(s) 1109, 1142
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 5 cut(s) 260, 318, 577, 1156, 1210
Mly113I GGCGCC 1 cut(s) 832
MlyI GAGTC 2 cut(s) 159, 609
MmeI TCCRAC 1 cut(s) 1150
MnlI CCTC 8 cut(s) 35, 98, 227, 436, 842, 989, 1018, 1199
MseI TTAA 2 cut(s) 1090, 1229
MslI CAYNNNNRTG 1 cut(s) 871
MspA1I CMGCKG 2 cut(s) 641, 886
MspI CCGG 1 cut(s) 1086
MspR9I CCNGG 3 cut(s) 913, 1011, 1183
Mva1269I GAATGC 2 cut(s) 172, 240
MvaI CCWGG 3 cut(s) 913, 1011, 1183
MwoI GCNNNNNNNGC 1 cut(s) 969
NarI GGCGCC 1 cut(s) 832
NcoI CCATGG 1 cut(s) 709
NdeII GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
NlaIII CATG 4 cut(s) 270, 713, 870, 1064
NlaIV GGNNCC 1 cut(s) 833
NmuCI GTSAC 1 cut(s) 588
NspV TTCGAA 1 cut(s) 1214
PagI TCATGA 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 705
PciSI GCTCTTC 1 cut(s) 4
PctI GAATGC 2 cut(s) 172, 240
PfeI GAWTC 2 cut(s) 635, 684
PflMI CCANNNNNTGG 1 cut(s) 918
PfoI TCCNGGA 1 cut(s) 1181
PkrI GCNGC 5 cut(s) 23, 47, 239, 885, 888
PleI GAGTC 2 cut(s) 158, 608
PluTI GGCGCC 1 cut(s) 835
PpsI GAGTC 2 cut(s) 158, 608
Ppu21I YACGTR 2 cut(s) 359, 584
Psp6I CCWGG 3 cut(s) 911, 1009, 1181
PspEI GGTNACC 1 cut(s) 751
PspGI CCWGG 3 cut(s) 911, 1009, 1181
PspN4I GGNNCC 1 cut(s) 833
PspPI GGNCC 2 cut(s) 325, 471
PstI CTGCAG 3 cut(s) 50, 347, 1150
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 2 cut(s) 1109, 1142
PvuII CAGCTG 2 cut(s) 641, 886
RsaI GTAC 5 cut(s) 254, 279, 284, 302, 1125
RsaNI GTAC 5 cut(s) 253, 278, 283, 301, 1124
RseI CAYNNNNRTG 1 cut(s) 871
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 1090, 1229
SatI GCNGC 5 cut(s) 22, 46, 238, 884, 887
Sau3AI GATC 7 cut(s) 572, 785, 1055, 1071, 1109, 1142, 1222
Sau96I GGNCC 2 cut(s) 325, 471
SchI GAGTC 2 cut(s) 159, 609
ScrFI CCNGG 3 cut(s) 913, 1011, 1183
SduI GDGCHC 1 cut(s) 481
SfaNI GCATC 2 cut(s) 909, 937
SfcI CTRYAG 3 cut(s) 46, 343, 1146
SfoI GGCGCC 1 cut(s) 833
SfuI TTCGAA 1 cut(s) 1214
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 871
SmlI CTYRAG 1 cut(s) 1203
SmoI CTYRAG 1 cut(s) 1203
SnaBI TACGTA 1 cut(s) 584
Sse9I AATT 5 cut(s) 260, 318, 577, 1156, 1210
SsiI CCGC 5 cut(s) 4, 238, 626, 720, 749
SspDI GGCGCC 1 cut(s) 831
SspMI CTAG 2 cut(s) 54, 372
StyD4I CCNGG 3 cut(s) 911, 1009, 1181
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 3 cut(s) 257, 282, 944
TaiI ACGT 3 cut(s) 361, 567, 586
TaqI TCGA 4 cut(s) 176, 365, 575, 1214
TasI AATT 5 cut(s) 260, 318, 577, 1156, 1210
TatI WGTACW 1 cut(s) 252
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 635, 684
Tru1I TTAA 2 cut(s) 1090, 1229
Tru9I TTAA 2 cut(s) 1090, 1229
TscAI CASTG 4 cut(s) 251, 262, 481, 949
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 4 cut(s) 21, 45, 883, 886
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 3 cut(s) 139, 255, 855
TspRI CASTG 4 cut(s) 251, 262, 481, 949
Van91I CCANNNNNTGG 1 cut(s) 918
VpaK11BI GGWCC 1 cut(s) 471
XapI RAATTY 3 cut(s) 260, 577, 1210
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XspI CTAG 2 cut(s) 54, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.