Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0019784

Physical Location & Seq

Genomic Coordinates Reverse (-)

42756743 .. 42757915

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG291600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAAAATGATGATAATGAGGATGATCCCCTCTCTGATGAGCACTATGGCTATCCCAAGGCAGAGTCTGACAAATGGGTTTCTTGCATTAGAGTTCTTGACCCAAAGACAGCAACTACAACTTGTTTGCTGGAGCTCGACAACGAAGCTGCAATCAGTGTATGTACAGTGAATTTTCATGATAACGCCGGCCTGGTTGGGGCAGCTCCTCCGAAGGAGTATGGTACGCTTTTGGCTGTTGGAACCGCAAAGGGACTTCAATTTTGGCCCAAGAAAAGTATAACCGGAGGATTTATTCATATATATCGATTTCTTGATGATGGAAAGTCCCTTGAACTTTTGCACAAAACAGAAGTGGATGGTGTTCCTCTTGCTTTATGTAAGTTTCAGGGAAGGTTACTAGCAGGGATAGGATCAGTGCTCAGACTATATGATTTGGGGAGAAAAAGATTGCTTAGGAAATGTGAGAATAAGCTGTTTCCCAACAATATTGTATCCATTCACACCTATCGTGATCGAATATATGTAGGTGACATTCAAGAGTCATTCCACTACTGCAAGTATAGGCGGGATGAGAATCAGCTGTATATATTTGCTGATGATCATGTTCCAAGATGGCTGACAGCATCGTTCCATATTGATTTTGACACGATGGCAGGTGCGGACAAGTTTGGGAATGTGTACTTTGTGCGGTTACCACAGGATGTTTCAGATGGGATAGAAGAAGATCCAACAGGTGGGAGGATAAAATGGAAGCAGGGGAAGTTGAATGGTGCTCCAAACAAAGTGGAGGAGATCGTGCAGTTTCATGTTGGCGATGTAGTCAGCTGCTTGCAGAAGGCATCTCTCATTCCAGGTGGTGGTGAGTGCGTCATTTACGGGACAGTGATGGGTAGCTTGGGTGCATTGTTTGCATTCACTTCCCGTGATGACGTTGTCTTCTTTTCTCACCTGGAGATGTATATGAGGCAGGAACATCCACCCTTGTGTGGGAGAGATCACATGGCTTATAGATCAGCTTATTTCCCTGTTAAGGATGTGATTGATGGAGATCTTTGCGAGCAGTACCCAACACTGCCTATGGATGTACAGAGGAAAATTGCAGTCGAGTTGGATAGGACTCCTGGAGAGATACTAAAGAAACTTGAGGAAATTCGAAATAAGATCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005689 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009555 GO:0009791 GO:0009846 GO:0009856 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0009987 GO:0010467 GO:0010605 GO:0016070 GO:0016071 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035670 GO:0042176 GO:0042177 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0046483 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051704 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071005 GO:0071011 GO:0071013 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

390

Amino Acids

44.0

Weight (kDa)

5.59

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSF_A	PF03178	28 - 356	2e-92	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019784)

Species	Orthologous Gene IDs
malus_domestica	MD07G1188800.v1.1
rosa_multiflora	Rmu_sc0000831.1_g000022 Rmu_sc0007491.1_g000001
rosa_rugosa	Rorug03G0255000
rosa_samantha	Rh1BG291600 Rh1CG308200 Rh1DG323300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	647
Acc36I	ACCTGC	1 cut(s)	647
AccB7I	CCANNNNNTGG	2 cut(s)	737, 860
AciI	CCGC	4 cut(s)	246, 568, 662, 691
AclWI	GGATC	3 cut(s)	20, 421, 722
AcsI	RAATTY	2 cut(s)	172, 1152
AfaI	GTAC	5 cut(s)	166, 226, 683, 1067, 1089
AfiI	CCNNNNNNNGG	6 cut(s)	199, 737, 860, 989, 990, 1033
AgsI	TTSAA	4 cut(s)	260, 335, 539, 769
AjnI	CCWGG	4 cut(s)	192, 853, 951, 1123
AleI	CACNNNNGTG	1 cut(s)	985
AluBI	AGCT	8 cut(s)	136, 149, 206, 475, 583, 828, 897, 1019
AluI	AGCT	8 cut(s)	136, 149, 206, 475, 583, 828, 897, 1019
Alw21I	GWGCWC	4 cut(s)	45, 138, 423, 778
AlwI	GGATC	3 cut(s)	20, 421, 722
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	190, 266
ApeKI	GCWGC	3 cut(s)	149, 203, 828
ApoI	RAATTY	2 cut(s)	172, 1152
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	3 cut(s)	542, 875, 941
AsuII	TTCGAA	1 cut(s)	1156
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	931
Bbv12I	GWGCWC	4 cut(s)	45, 138, 423, 778
BbvI	GCAGC	3 cut(s)	136, 215, 815
BccI	CCATC	7 cut(s)	314, 353, 609, 646, 707, 883, 1040
BciT130I	CCWGG	4 cut(s)	194, 855, 953, 1125
BciVI	GTATCC	1 cut(s)	505
BclI	TGATCA	1 cut(s)	601
BfaI	CTAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	647
BfuI	GTATCC	1 cut(s)	505
BglII	AGATCT	1 cut(s)	1051
BisI	GCNGC	3 cut(s)	150, 204, 829
BlsI	GCNGC	3 cut(s)	151, 205, 830
Bme1390I	CCNGG	4 cut(s)	194, 855, 953, 1125
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	4 cut(s)	194, 855, 953, 1125
BmsI	GCATC	2 cut(s)	635, 851
BpiI	GAAGAC	1 cut(s)	931
BpmI	CTGGAG	3 cut(s)	152, 974, 1146
Bpu10I	CCTNAGC	1 cut(s)	455
Bpu14I	TTCGAA	1 cut(s)	1156
BpuEI	CTTGAG	1 cut(s)	1166
Bsa29I	ATCGAT	1 cut(s)	307
BsaBI	GATNNNNATC	2 cut(s)	576, 1050
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 737, 860, 989, 990, 1033
Bse118I	RCCGGY	1 cut(s)	188
Bse8I	GATNNNNATC	2 cut(s)	576, 1050
BseBI	CCWGG	4 cut(s)	194, 855, 953, 1125
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	7 cut(s)	28, 364, 577, 709, 976, 1042, 1090
BseJI	GATNNNNATC	2 cut(s)	576, 1050
BseLI	CCNNNNNNNGG	6 cut(s)	199, 737, 860, 989, 990, 1033
BseMII	CTCAG	1 cut(s)	436
BseRI	GAGGAG	2 cut(s)	198, 806
BseXI	GCAGC	3 cut(s)	136, 215, 815
BsgI	GTGCAG	1 cut(s)	821
BshFI	GGCC	2 cut(s)	192, 268
BshVI	ATCGAT	1 cut(s)	307
BsiHKAI	GWGCWC	4 cut(s)	45, 138, 423, 778
BsiSI	CCGG	2 cut(s)	189, 285
BslFI	GGGAC	3 cut(s)	267, 313, 895
BslI	CCNNNNNNNGG	6 cut(s)	199, 737, 860, 989, 990, 1033
BsmFI	GGGAC	3 cut(s)	267, 313, 895
BsmI	GAATGC	1 cut(s)	914
BsnI	GGCC	2 cut(s)	192, 268
Bsp119I	TTCGAA	1 cut(s)	1156
Bsp1286I	GDGCHC	4 cut(s)	45, 138, 423, 778
Bsp1407I	TGTACA	2 cut(s)	164, 1087
BspACI	CCGC	4 cut(s)	246, 568, 662, 691
BspANI	GGCC	2 cut(s)	192, 268
BspCNI	CTCAG	1 cut(s)	435
BspDI	ATCGAT	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	3 cut(s)	20, 421, 722
BspT104I	TTCGAA	1 cut(s)	1156
BsrFI	RCCGGY	1 cut(s)	188
BsrGI	TGTACA	2 cut(s)	164, 1087
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	4 cut(s)	194, 855, 953, 1125
Bst4CI	ACNGT	2 cut(s)	169, 886
BstAPI	GCANNNNNTGC	1 cut(s)	911
BstAUI	TGTACA	2 cut(s)	164, 1087
BstBI	TTCGAA	1 cut(s)	1156
BstC8I	GCNNGC	3 cut(s)	190, 833, 1061
BstDEI	CTNAG	2 cut(s)	422, 455
BstEII	GGTNACC	1 cut(s)	693
BstF5I	GGATG	7 cut(s)	28, 364, 577, 709, 976, 1042, 1090
BstMWI	GCNNNNNNNGC	1 cut(s)	911
BstNI	CCWGG	4 cut(s)	194, 855, 953, 1125
BstPI	GGTNACC	1 cut(s)	693
BstSCI	CCNGG	4 cut(s)	192, 853, 951, 1123
BstV1I	GCAGC	3 cut(s)	136, 215, 815
BstV2I	GAAGAC	1 cut(s)	931
BstX2I	RGATCY	2 cut(s)	727, 1051
BstYI	RGATCY	2 cut(s)	727, 1051
Bsu15I	ATCGAT	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	192, 268
BsuTUI	ATCGAT	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	831
BtsCI	GGATG	7 cut(s)	28, 364, 577, 709, 976, 1042, 1090
BtsI	GCAGTG	1 cut(s)	1073
BtsIMutI	CAGTG	5 cut(s)	163, 174, 423, 891, 1073
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	3 cut(s)	190, 833, 1061
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	1 cut(s)	859
Csp6I	GTAC	5 cut(s)	165, 225, 682, 1066, 1088
CspCI	CAANNNNNGTGG	2 cut(s)	768, 803
CviAII	CATG	4 cut(s)	179, 605, 809, 1003
CviQI	GTAC	5 cut(s)	165, 225, 682, 1066, 1088
DdeI	CTNAG	2 cut(s)	422, 455
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	136
Eco91I	GGTNACC	1 cut(s)	693
EcoICRI	GAGCTC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	693
EcoRII	CCWGG	4 cut(s)	192, 853, 951, 1123
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	182, 608, 812, 1006
FaqI	GGGAC	3 cut(s)	267, 313, 895
FatI	CATG	4 cut(s)	178, 604, 808, 1002
FauI	CCCGC	1 cut(s)	561
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	150, 204, 829
FokI	GGATG	7 cut(s)	35, 371, 584, 716, 963, 1049, 1097
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	3 cut(s)	150, 204, 829
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	3 cut(s)	150, 204, 829
GsuI	CTGGAG	3 cut(s)	152, 974, 1146
HaeIII	GGCC	2 cut(s)	192, 268
HapII	CCGG	2 cut(s)	189, 285
HgaI	GACGC	1 cut(s)	859
Hin1II	CATG	4 cut(s)	182, 608, 812, 1006
HinfI	GANTC	4 cut(s)	65, 542, 577, 1120
HpaII	CCGG	2 cut(s)	189, 285
HphI	GGTGA	3 cut(s)	542, 875, 941
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	5 cut(s)	37, 70, 213, 425, 712
Hpy188III	TCNNGA	5 cut(s)	98, 179, 314, 512, 539
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	3 cut(s)	208, 387, 832
HpyCH4III	ACNGT	2 cut(s)	169, 886
HpyCH4IV	ACGT	1 cut(s)	933
HpyCH4V	TGCA	9 cut(s)	87, 152, 343, 558, 802, 835, 905, 914, 1103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	911
HpyF3I	CTNAG	2 cut(s)	422, 455
HpySE526I	ACGT	1 cut(s)	933
Hsp92II	CATG	4 cut(s)	182, 608, 812, 1006
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	601
LmnI	GCTCC	3 cut(s)	133, 211, 781
Lsp1109I	GCAGC	3 cut(s)	136, 215, 815
LweI	GCATC	2 cut(s)	635, 851
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	933
MaeIII	GTNAC	3 cut(s)	396, 530, 693
MboII	GAAGA	3 cut(s)	734, 737, 931
MflI	RGATCY	2 cut(s)	727, 1051
MhlI	GDGCHC	4 cut(s)	45, 138, 423, 778
MluCI	AATT	4 cut(s)	172, 260, 1098, 1152
MlyI	GAGTC	3 cut(s)	74, 551, 1114
MmeI	TCCRAC	3 cut(s)	220, 755, 1092
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	2 cut(s)	1032, 1171
MslI	CAYNNNNRTG	1 cut(s)	985
MspA1I	CMGCKG	2 cut(s)	583, 828
MspI	CCGG	2 cut(s)	189, 285
MspR9I	CCNGG	4 cut(s)	194, 855, 953, 1125
Mva1269I	GAATGC	1 cut(s)	914
MvaI	CCWGG	4 cut(s)	194, 855, 953, 1125
MwoI	GCNNNNNNNGC	1 cut(s)	911
NaeI	GCCGGC	1 cut(s)	190
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	4 cut(s)	182, 608, 812, 1006
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	1156
OliI	CACNNNNGTG	1 cut(s)	985
PagI	TCATGA	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	647
PctI	GAATGC	1 cut(s)	914
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	577
PflFI	GACNNNGTC	1 cut(s)	935
PflMI	CCANNNNNTGG	2 cut(s)	737, 860
PfoI	TCCNGGA	1 cut(s)	1123
PkrI	GCNGC	3 cut(s)	151, 205, 830
PleI	GAGTC	3 cut(s)	73, 550, 1114
PpsI	GAGTC	3 cut(s)	73, 550, 1114
Psp124BI	GAGCTC	1 cut(s)	138
Psp6I	CCWGG	4 cut(s)	192, 853, 951, 1123
PspEI	GGTNACC	1 cut(s)	693
PspGI	CCWGG	4 cut(s)	192, 853, 951, 1123
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	727, 1051
PsyI	GACNNNGTC	1 cut(s)	935
PvuII	CAGCTG	2 cut(s)	583, 828
RsaI	GTAC	5 cut(s)	166, 226, 683, 1067, 1089
RsaNI	GTAC	5 cut(s)	165, 225, 682, 1066, 1088
RseI	CAYNNNNRTG	1 cut(s)	985
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	1032, 1171
SatI	GCNGC	3 cut(s)	150, 204, 829
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	3 cut(s)	74, 551, 1114
ScrFI	CCNGG	4 cut(s)	194, 855, 953, 1125
SduI	GDGCHC	4 cut(s)	45, 138, 423, 778
SfaNI	GCATC	2 cut(s)	635, 851
SfuI	TTCGAA	1 cut(s)	1156
SmiMI	CAYNNNNRTG	1 cut(s)	985
SmlI	CTYRAG	1 cut(s)	1145
SmoI	CTYRAG	1 cut(s)	1145
Sse9I	AATT	4 cut(s)	172, 260, 1098, 1152
SsiI	CCGC	4 cut(s)	246, 568, 662, 691
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	4 cut(s)	192, 853, 951, 1123
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	169, 886
TaiI	ACGT	1 cut(s)	936
TaqI	TCGA	5 cut(s)	138, 307, 517, 1107, 1156
TasI	AATT	4 cut(s)	172, 260, 1098, 1152
TatI	WGTACW	3 cut(s)	164, 681, 1087
TfiI	GAWTC	1 cut(s)	577
Tru1I	TTAA	2 cut(s)	1032, 1171
Tru9I	TTAA	2 cut(s)	1032, 1171
TscAI	CASTG	5 cut(s)	163, 174, 423, 891, 1080
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	3 cut(s)	149, 203, 828
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	3 cut(s)	167, 287, 797
TspRI	CASTG	5 cut(s)	163, 174, 423, 891, 1080
Tth111I	GACNNNGTC	1 cut(s)	935
Van91I	CCANNNNNTGG	2 cut(s)	737, 860
XapI	RAATTY	2 cut(s)	172, 1152
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.