Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0021860

Physical Location & Seq

Genomic Coordinates Forward (+)

27642690 .. 27645675

Gene Structure 2986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1198000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCACGAGCTGTGTTTCCTAGCATTGTAGGCCGCCCTCGTCACACTGGTGTCATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAGTCCAAGCGTGGTATTTTAACTTTGAAATACCCTATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCAGTTCTTCTAACTGAGGCACCTCTGAATCCTAAGGCCAATCGTGAGAAGATGACCCAAATAATGTTTGAGACCTTTAACACTCCTGCTATGTATGTAGCCATTCAAGCTGTTCTGTCCCTGTATGCAAGTGGTCGTACAACCGGTATTGTACTTGACTCTGGTGATGGTGTCAGCCATACAGTCCCCATTTACGAGGGGTATGCCCTCCCCCATGCCATCCTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATCACTTGATGAAAATTCTTACGGAGCGTGGATATTCCTTCACTACCACTGCTGAGCGTGAAATTGTTAGAGACATGAAGGAAAAACTCTCTTACATTGCCCTTGACTATGAGCAGGAGATGGAGACTTCCAAAACCAGCTCTGCAGTTGAGAAGAGCTACGAATTGCCAGATGGGCAGGTCATTACCATTGGTGCAGAGCGGTTCCGATGCCCAGAAGTCCTTTTCCAACCATCAATGATTGGAATGGAAGCAGCAGGCATTCACGAAACCACTTATAACTCCATCATGAAGTGCGATGTCGATATCAGGAAAGACCTGTACGGAAACATTGTACTCTCTGGTGGTTCAACCATGTTTCCAGGCATTGCTGATAGAATGAGCAAGGAAATTACTGCCCTTGCCCCAAGCAGTATGAAGATCAAGGTGGTGGCACCACCCGAGAGGAAATACAGTGTCTGGATCGGAGGCTCAATCTTGGCTTCCCTTAGTACCTTCCAGCAGATGTGGATTGCAAAAGCAGAGTACGATGAGTCTGGGCCATCTATTGTTCATAGGAAATGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0030054 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

361

Amino Acids

40.04

Weight (kDa)

5.74

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	1 - 360	1.3e-141	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021860)

Species	Orthologous Gene IDs
malus_domestica	MD01G1133700.v1.1 MD07G1198000.v1.1
pyrus_communis	pycom01g15450 pycom07g18520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	792
Acc36I	ACCTGC	1 cut(s)	682
AccB1I	GGYRCC	2 cut(s)	277, 946
AccBSI	CCGCTC	1 cut(s)	715
AciI	CCGC	2 cut(s)	64, 715
AclWI	GGATC	1 cut(s)	983
AcsI	RAATTY	1 cut(s)	528
AfaI	GTAC	6 cut(s)	397, 411, 836, 849, 1006, 1040
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	157, 365, 864
AjnI	CCWGG	1 cut(s)	874
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	5 cut(s)	41, 235, 368, 654, 672
AluI	AGCT	5 cut(s)	41, 235, 368, 654, 672
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	323, 579, 632
AlwI	GGATC	1 cut(s)	983
AlwNI	CAGNNNCTG	1 cut(s)	972
Ama87I	CYCGRG	1 cut(s)	953
AoxI	GGCC	4 cut(s)	61, 97, 294, 1052
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	1 cut(s)	528
AsiGI	ACCGGT	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	97, 1052
AsuHPI	GGTGA	2 cut(s)	131, 434
AvaI	CYCGRG	1 cut(s)	953
AxyI	CCTNAGG	1 cut(s)	291
BanI	GGYRCC	2 cut(s)	277, 946
BauI	CACGAG	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	779
BccI	CCATC	7 cut(s)	419, 485, 628, 680, 754, 806, 1063
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	876
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	323, 579, 632
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	682
BglI	GCCNNNNNGGC	1 cut(s)	688
BisI	GCNGC	2 cut(s)	64, 768
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	2 cut(s)	65, 769
Bme1390I	CCNGG	1 cut(s)	876
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	2 cut(s)	97, 1052
BmiI	GGNNCC	3 cut(s)	279, 719, 948
BmrFI	CCNGG	1 cut(s)	876
BmrI	ACTGGG	2 cut(s)	199, 254
BmsI	GCATC	4 cut(s)	19, 97, 223, 713
BmuI	ACTGGG	2 cut(s)	199, 254
BpmI	CTGGAG	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	3 cut(s)	82, 194, 260
Bse21I	CCTNAGG	1 cut(s)	291
Bse3DI	GCAATG	2 cut(s)	609, 879
BseBI	CCWGG	1 cut(s)	876
BseGI	GGATG	2 cut(s)	199, 477
BseMI	GCAATG	2 cut(s)	609, 879
BseMII	CTCAG	3 cut(s)	143, 264, 558
BseNI	ACTGG	3 cut(s)	82, 194, 260
BseXI	GCAGC	1 cut(s)	779
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	4 cut(s)	63, 99, 296, 1054
BshNI	GGYRCC	2 cut(s)	277, 946
BshTI	ACCGGT	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	953
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	361, 428
BsmAI	GTCTC	3 cut(s)	323, 579, 632
BsmFI	GGGAC	2 cut(s)	361, 428
BsmI	GAATGC	1 cut(s)	774
BsnI	GGCC	4 cut(s)	63, 99, 296, 1054
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	514, 933, 975
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	2 cut(s)	64, 715
BspANI	GGCC	4 cut(s)	63, 99, 296, 1054
BspCNI	CTCAG	3 cut(s)	142, 265, 559
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	279, 719, 948
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	1 cut(s)	983
BspQI	GCTCTTC	2 cut(s)	246, 662
BspT107I	GGYRCC	2 cut(s)	277, 946
BspTNI	GGTCTC	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	715
BsrDI	GCAATG	2 cut(s)	609, 879
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	3 cut(s)	82, 194, 260
BssAI	RCCGGY	1 cut(s)	401
BssMI	GATC	3 cut(s)	514, 933, 975
BssSI	CACGAG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	36
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	2 cut(s)	442, 968
Bst6I	CTCTTC	2 cut(s)	246, 662
BstC8I	GCNNGC	1 cut(s)	772
BstDEI	CTNAG	5 cut(s)	129, 273, 291, 567, 1001
BstF5I	GGATG	2 cut(s)	199, 477
BstKTI	GATC	3 cut(s)	517, 936, 978
BstMAI	GTCTC	3 cut(s)	323, 579, 632
BstMBI	GATC	3 cut(s)	514, 933, 975
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 38, 60, 365, 688
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	874
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	1 cut(s)	779
Bsu36I	CCTNAGG	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	63, 99, 296, 1054
BtgZI	GCGATG	1 cut(s)	825
BtsCI	GGATG	2 cut(s)	199, 477
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	4 cut(s)	75, 510, 561, 973
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	772
CaiI	CAGNNNCTG	1 cut(s)	972
CciI	TCATGA	1 cut(s)	801
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	97, 1052
Csp6I	GTAC	6 cut(s)	396, 410, 835, 848, 1005, 1039
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	8 cut(s)	85, 94, 173, 199, 473, 589, 802, 868
CviQI	GTAC	6 cut(s)	396, 410, 835, 848, 1005, 1039
DdeI	CTNAG	5 cut(s)	129, 273, 291, 567, 1001
DpnI	GATC	3 cut(s)	516, 935, 977
DpnII	GATC	3 cut(s)	514, 933, 975
Eam1104I	CTCTTC	2 cut(s)	246, 662
EarI	CTCTTC	2 cut(s)	246, 662
Eco31I	GGTCTC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	820
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	953
EcoRII	CCWGG	1 cut(s)	874
EcoRV	GATATC	1 cut(s)	820
FaeI	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 871
FaqI	GGGAC	2 cut(s)	361, 428
FatI	CATG	8 cut(s)	84, 93, 172, 198, 472, 588, 801, 867
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	64, 768
FokI	GGATG	2 cut(s)	206, 464
Fsp4HI	GCNGC	2 cut(s)	64, 768
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	2 cut(s)	64, 768
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	63, 99, 296, 1054
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 871
HinfI	GANTC	3 cut(s)	286, 416, 1046
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	2 cut(s)	131, 434
Hpy188I	TCNGA	3 cut(s)	285, 722, 980
Hpy188III	TCNNGA	7 cut(s)	302, 488, 503, 779, 802, 823, 973
HpyAV	CCTTC	5 cut(s)	232, 491, 562, 586, 1018
HpyCH4III	ACNGT	2 cut(s)	442, 968
HpyCH4V	TGCA	4 cut(s)	386, 659, 710, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 38, 60, 365, 688
HpyF3I	CTNAG	5 cut(s)	129, 273, 291, 567, 1001
Hsp92II	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 871
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	3 cut(s)	514, 933, 975
LguI	GCTCTTC	2 cut(s)	246, 662
LmnI	GCTCC	2 cut(s)	37, 538
Lsp1109I	GCAGC	1 cut(s)	779
LweI	GCATC	4 cut(s)	19, 97, 223, 713
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	2 cut(s)	71, 503
MalI	GATC	3 cut(s)	516, 935, 977
MbiI	CCGCTC	1 cut(s)	715
MboI	GATC	3 cut(s)	514, 933, 975
MboII	GAAGA	6 cut(s)	217, 257, 263, 319, 679, 943
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	4 cut(s)	528, 576, 677, 903
MlyI	GAGTC	2 cut(s)	410, 1055
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	9 cut(s)	78, 118, 268, 291, 448, 476, 518, 951, 974
MseI	TTAA	3 cut(s)	149, 336, 1081
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	5 cut(s)	17, 38, 60, 365, 688
NdeII	GATC	3 cut(s)	514, 933, 975
NlaIII	CATG	8 cut(s)	88, 97, 176, 202, 476, 592, 805, 871
NlaIV	GGNNCC	3 cut(s)	279, 719, 948
NmuCI	GTSAC	2 cut(s)	71, 503
OliI	CACNNNNGTG	1 cut(s)	78
PagI	TCATGA	1 cut(s)	801
PciSI	GCTCTTC	2 cut(s)	246, 662
PctI	GAATGC	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	65, 769
PleI	GAGTC	2 cut(s)	410, 1054
PpsI	GAGTC	2 cut(s)	410, 1054
PsiI	TTATAA	1 cut(s)	792
Psp6I	CCWGG	1 cut(s)	874
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	3 cut(s)	279, 719, 948
PspPI	GGNCC	2 cut(s)	97, 1052
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	972
RsaI	GTAC	6 cut(s)	397, 411, 836, 849, 1006, 1040
RsaNI	GTAC	6 cut(s)	396, 410, 835, 848, 1005, 1039
RseI	CAYNNNNRTG	1 cut(s)	78
SapI	GCTCTTC	2 cut(s)	246, 662
SaqAI	TTAA	3 cut(s)	149, 336, 1081
SatI	GCNGC	2 cut(s)	64, 768
Sau3AI	GATC	3 cut(s)	514, 933, 975
Sau96I	GGNCC	2 cut(s)	97, 1052
SchI	GAGTC	2 cut(s)	410, 1055
ScrFI	CCNGG	1 cut(s)	876
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	4 cut(s)	19, 97, 223, 713
SfcI	CTRYAG	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	4 cut(s)	528, 576, 677, 903
SsiI	CCGC	2 cut(s)	64, 715
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	874
TaaI	ACNGT	2 cut(s)	442, 968
TaqI	TCGA	1 cut(s)	816
TasI	AATT	4 cut(s)	528, 576, 677, 903
TatI	WGTACW	2 cut(s)	409, 847
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	3 cut(s)	149, 336, 1081
Tru9I	TTAA	3 cut(s)	149, 336, 1081
TscAI	CASTG	4 cut(s)	82, 517, 568, 973
TseFI	GTSAC	2 cut(s)	71, 503
TseI	GCWGC	1 cut(s)	767
Tsp45I	GTSAC	2 cut(s)	71, 503
TspDTI	ATGAA	5 cut(s)	539, 605, 818, 944, 1055
TspGWI	ACGGA	2 cut(s)	551, 852
TspRI	CASTG	4 cut(s)	82, 517, 568, 973
XapI	RAATTY	1 cut(s)	528
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.