Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0021860

Physical Location & Seq

Genomic Coordinates Forward (+)

15308023 .. 15309353

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCAGAAGCTGAGGACATTCAGCCACTCGTGTGTGATAATGGAACGGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCACGAGCTGTGTTCCCTAGCATTGTAGGGCGCCCTCGTCACACCGGTGTCATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAGTCCAAGCGTGGTATATTAACTTTGAAATACCCTATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTATAATGAGCTTCGTGTTGCCCCAGAAGAGCACCCTGTCCTTCTAACTGAGGCCCCTCTGAATCCCAAGGCCAATCGTGAGAAGATGACCCAAATAATGTTTGAGACCTTTAACACTCCGGCTATGTATGTAGCCATTCAAGCTGTTCTTTCCCTGTATGCAAGCGGTCGTACAACTGGTATTGTGCTCGACTCTGGTGATGGTGTCAGCCATACAGTCCCCATTTACGAGGGGTATGCCCTCCCCCATGCCATCCTTCGTCTTGACCTTGCTGGTCGTGACCTCACTGATAGCTTGATGAAAATTCTTACGGAGCGTGGATATTCCTTCACTACCACTGCAGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTCTCTTACATTGCCCTTGACTATGAGCAGGAGATGGAGACTTCCAAAACCAGCTCTTCAGTTGAGAAGAGCTATGAGTTACCAGATGGGCAGGTCATTACCATTGGCGCAGAGCGGTTCCGATGCCCAGAAGTCCTTTTCCAACCATCAATGATCGGGATGGAAGCAGCAGGCATTCACGAAACCACGTACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAAGACCTGTATGGCAACATTGTACTCTCTGGTGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAAATCACTGCCCTAGCCCCAAGCAGTATGAAGATCGATCGGTGGTGGCACCACCCGAGAGGAAATACAGTGTCTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0030054 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

344

Amino Acids

38.04

Weight (kDa)

5.27

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021860)

Species	Orthologous Gene IDs
malus_domestica	MD01G1133700.v1.1 MD07G1198000.v1.1
pyrus_communis	pycom01g15450 pycom07g18520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	733
AccB1I	GGYRCC	2 cut(s)	114, 999
AccBSI	CCGCTC	1 cut(s)	766
AciI	CCGC	2 cut(s)	441, 766
AcsI	RAATTY	1 cut(s)	579
AcuI	CTGAAG	1 cut(s)	693
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	3 cut(s)	448, 842, 900
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	208, 416, 915
AjnI	CCWGG	1 cut(s)	925
AleI	CACNNNNGTG	2 cut(s)	31, 129
AluBI	AGCT	7 cut(s)	11, 92, 286, 419, 570, 705, 723
AluI	AGCT	7 cut(s)	11, 92, 286, 419, 570, 705, 723
Alw21I	GWGCWC	2 cut(s)	309, 465
Alw26I	GTCTC	2 cut(s)	374, 683
AlwNI	CAGNNNCTG	2 cut(s)	11, 1025
Ama87I	CYCGRG	1 cut(s)	1006
AoxI	GGCC	3 cut(s)	148, 327, 345
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	1 cut(s)	579
AsiGI	ACCGGT	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	117, 761
AspS9I	GGNCC	2 cut(s)	148, 328
AsuHPI	GGTGA	2 cut(s)	182, 485
AvaI	CYCGRG	1 cut(s)	1006
BanI	GGYRCC	2 cut(s)	114, 999
BauI	CACGAG	2 cut(s)	29, 87
Bbv12I	GWGCWC	2 cut(s)	309, 465
BbvCI	CCTCAGC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	830
BccI	CCATC	7 cut(s)	470, 536, 679, 731, 805, 805, 857
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	1 cut(s)	927
BcoDI	GTCTC	2 cut(s)	374, 683
BfaI	CTAG	2 cut(s)	102, 965
BfmI	CTRYAG	1 cut(s)	615
BfoI	RGCGCY	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	733
BisI	GCNGC	1 cut(s)	819
BlsI	GCNGC	1 cut(s)	820
Bme1390I	CCNGG	1 cut(s)	927
BmeT110I	CYCGRG	1 cut(s)	1006
BmgT120I	GGNCC	2 cut(s)	148, 328
BmiI	GGNNCC	4 cut(s)	116, 330, 770, 1001
BmrFI	CCNGG	1 cut(s)	927
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	4 cut(s)	70, 148, 274, 764
BmuI	ACTGGG	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	1 cut(s)	12
Bsa29I	ATCGAT	1 cut(s)	987
BsaAI	YACGTR	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	342, 925
BsaWI	WCCGGW	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	245, 457
Bse3DI	GCAATG	2 cut(s)	660, 930
BseBI	CCWGG	1 cut(s)	927
BseCI	ATCGAT	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	342, 925
BseGI	GGATG	3 cut(s)	250, 528, 816
BseMI	GCAATG	2 cut(s)	660, 930
BseMII	CTCAG	2 cut(s)	194, 315
BseNI	ACTGG	2 cut(s)	245, 457
BseXI	GCAGC	1 cut(s)	830
Bsh1285I	CGRYCG	2 cut(s)	445, 991
BshFI	GGCC	3 cut(s)	150, 329, 347
BshNI	GGYRCC	2 cut(s)	114, 999
BshTI	ACCGGT	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	987
BsiEI	CGRYCG	2 cut(s)	445, 991
BsiHKAI	GWGCWC	2 cut(s)	309, 465
BsiHKCI	CYCGRG	1 cut(s)	1006
BsiSI	CCGG	2 cut(s)	129, 395
BslFI	GGGAC	2 cut(s)	479, 650
BsmAI	GTCTC	2 cut(s)	374, 683
BsmFI	GGGAC	2 cut(s)	479, 650
BsmI	GAATGC	1 cut(s)	825
BsnI	GGCC	3 cut(s)	150, 329, 347
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	1006
Bsp1286I	GDGCHC	2 cut(s)	309, 465
Bsp143I	GATC	3 cut(s)	804, 984, 988
BspACI	CCGC	2 cut(s)	441, 766
BspANI	GGCC	3 cut(s)	150, 329, 347
BspCNI	CTCAG	3 cut(s)	4, 193, 316
BspDI	ATCGAT	1 cut(s)	987
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	4 cut(s)	116, 330, 770, 1001
BspMAI	CTGCAG	1 cut(s)	619
BspMI	ACCTGC	1 cut(s)	733
BspQI	GCTCTTC	3 cut(s)	297, 712, 713
BspT107I	GGYRCC	2 cut(s)	114, 999
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	766
BsrDI	GCAATG	2 cut(s)	660, 930
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	245, 457
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	342, 925
BssMI	GATC	3 cut(s)	804, 984, 988
BssNI	GRCGYC	1 cut(s)	115
BssSI	CACGAG	2 cut(s)	29, 87
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	2 cut(s)	29, 87
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	2 cut(s)	493, 1021
Bst6I	CTCTTC	3 cut(s)	297, 712, 713
BstACI	GRCGYC	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	840
BstC8I	GCNNGC	2 cut(s)	439, 823
BstDEI	CTNAG	3 cut(s)	12, 180, 324
BstF5I	GGATG	3 cut(s)	250, 528, 816
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	2 cut(s)	117, 761
BstKTI	GATC	3 cut(s)	807, 987, 991
BstMAI	GTCTC	2 cut(s)	374, 683
BstMBI	GATC	3 cut(s)	804, 984, 988
BstMCI	CGRYCG	2 cut(s)	445, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
BstNI	CCWGG	1 cut(s)	927
BstSCI	CCNGG	1 cut(s)	925
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	1 cut(s)	830
Bsu15I	ATCGAT	1 cut(s)	987
BsuRI	GGCC	3 cut(s)	150, 329, 347
BsuTUI	ATCGAT	1 cut(s)	987
BtsCI	GGATG	3 cut(s)	250, 528, 816
BtsI	GCAGTG	2 cut(s)	612, 957
BtsIMutI	CAGTG	4 cut(s)	561, 612, 957, 1026
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	2 cut(s)	439, 823
CaiI	CAGNNNCTG	2 cut(s)	11, 1025
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	2 cut(s)	117, 761
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	2 cut(s)	148, 328
ClaI	ATCGAT	1 cut(s)	987
Csp6I	GTAC	3 cut(s)	447, 841, 899
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	8 cut(s)	136, 145, 224, 250, 524, 640, 853, 919
CviQI	GTAC	3 cut(s)	447, 841, 899
DdeI	CTNAG	3 cut(s)	12, 180, 324
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	3 cut(s)	806, 986, 990
DpnII	GATC	3 cut(s)	804, 984, 988
Eam1104I	CTCTTC	3 cut(s)	297, 712, 713
EarI	CTCTTC	3 cut(s)	297, 712, 713
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	871
Eco57I	CTGAAG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	1006
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	925
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	2 cut(s)	479, 650
FatI	CATG	8 cut(s)	135, 144, 223, 249, 523, 639, 852, 918
Fnu4HI	GCNGC	1 cut(s)	819
FokI	GGATG	3 cut(s)	257, 515, 823
Fsp4HI	GCNGC	1 cut(s)	819
FspBI	CTAG	2 cut(s)	102, 965
GlaI	GCGC	2 cut(s)	116, 760
GluI	GCNGC	1 cut(s)	819
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	3 cut(s)	150, 329, 347
HapII	CCGG	2 cut(s)	129, 395
HhaI	GCGC	2 cut(s)	117, 761
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
Hin6I	GCGC	2 cut(s)	115, 759
HinP1I	GCGC	2 cut(s)	115, 759
HinfI	GANTC	2 cut(s)	337, 467
HpaII	CCGG	2 cut(s)	129, 395
HphI	GGTGA	2 cut(s)	182, 485
Hpy188I	TCNGA	2 cut(s)	336, 773
Hpy188III	TCNNGA	8 cut(s)	353, 539, 554, 808, 830, 853, 874, 1026
HpyAV	CCTTC	5 cut(s)	283, 326, 542, 613, 637
HpyCH4III	ACNGT	2 cut(s)	493, 1021
HpyCH4IV	ACGT	1 cut(s)	839
HpyCH4V	TGCA	2 cut(s)	437, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
HpyF3I	CTNAG	3 cut(s)	12, 180, 324
HpySE526I	ACGT	1 cut(s)	839
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
HspAI	GCGC	2 cut(s)	115, 759
KasI	GGCGCC	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	804, 984, 988
LguI	GCTCTTC	3 cut(s)	297, 712, 713
LmnI	GCTCC	2 cut(s)	88, 589
Lsp1109I	GCAGC	1 cut(s)	830
LweI	GCATC	4 cut(s)	70, 148, 274, 764
MaeI	CTAG	2 cut(s)	102, 965
MaeII	ACGT	1 cut(s)	839
MaeIII	GTNAC	3 cut(s)	122, 554, 729
MalI	GATC	3 cut(s)	806, 986, 990
MbiI	CCGCTC	1 cut(s)	766
MboI	GATC	3 cut(s)	804, 984, 988
MboII	GAAGA	6 cut(s)	268, 314, 370, 699, 730, 994
MhlI	GDGCHC	2 cut(s)	309, 465
MluCI	AATT	2 cut(s)	579, 627
Mly113I	GGCGCC	1 cut(s)	115
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	817
MseI	TTAA	2 cut(s)	200, 387
MslI	CAYNNNNRTG	2 cut(s)	31, 129
MspI	CCGG	2 cut(s)	129, 395
MspR9I	CCNGG	1 cut(s)	927
Mva1269I	GAATGC	1 cut(s)	825
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	3 cut(s)	68, 89, 416
NarI	GGCGCC	1 cut(s)	115
NdeII	GATC	3 cut(s)	804, 984, 988
NlaIII	CATG	8 cut(s)	139, 148, 227, 253, 527, 643, 856, 922
NlaIV	GGNNCC	4 cut(s)	116, 330, 770, 1001
NmuCI	GTSAC	2 cut(s)	122, 554
OliI	CACNNNNGTG	2 cut(s)	31, 129
PagI	TCATGA	1 cut(s)	852
PciSI	GCTCTTC	3 cut(s)	297, 712, 713
PctI	GAATGC	1 cut(s)	825
PfeI	GAWTC	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	820
Ple19I	CGATCG	1 cut(s)	991
PleI	GAGTC	1 cut(s)	461
PluTI	GGCGCC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	461
Ppu21I	YACGTR	1 cut(s)	840
Psp6I	CCWGG	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	4 cut(s)	116, 330, 770, 1001
PspPI	GGNCC	2 cut(s)	148, 328
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	2 cut(s)	11, 1025
PvuI	CGATCG	1 cut(s)	991
RsaI	GTAC	3 cut(s)	448, 842, 900
RsaNI	GTAC	3 cut(s)	447, 841, 899
RseI	CAYNNNNRTG	2 cut(s)	31, 129
SapI	GCTCTTC	3 cut(s)	297, 712, 713
SaqAI	TTAA	2 cut(s)	200, 387
SatI	GCNGC	1 cut(s)	819
Sau3AI	GATC	3 cut(s)	804, 984, 988
Sau96I	GGNCC	2 cut(s)	148, 328
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	927
SduI	GDGCHC	2 cut(s)	309, 465
SfaNI	GCATC	4 cut(s)	70, 148, 274, 764
SfcI	CTRYAG	1 cut(s)	615
SfoI	GGCGCC	1 cut(s)	116
SgrAI	CRCCGGYG	1 cut(s)	128
SmiMI	CAYNNNNRTG	2 cut(s)	31, 129
Sse9I	AATT	2 cut(s)	579, 627
SsiI	CCGC	2 cut(s)	441, 766
SspDI	GGCGCC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	102, 965
StyD4I	CCNGG	1 cut(s)	925
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	493, 1021
TaiI	ACGT	1 cut(s)	842
TaqI	TCGA	2 cut(s)	465, 987
TasI	AATT	2 cut(s)	579, 627
TatI	WGTACW	1 cut(s)	898
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	2 cut(s)	200, 387
Tru9I	TTAA	2 cut(s)	200, 387
TscAI	CASTG	4 cut(s)	568, 619, 964, 1026
TseFI	GTSAC	2 cut(s)	122, 554
TseI	GCWGC	1 cut(s)	818
Tsp45I	GTSAC	2 cut(s)	122, 554
TspDTI	ATGAA	4 cut(s)	590, 656, 869, 995
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	4 cut(s)	568, 619, 964, 1026
XapI	RAATTY	1 cut(s)	579
XspI	CTAG	2 cut(s)	102, 965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.