Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0021163

Physical Location & Seq

Genomic Coordinates Reverse (-)

32406377 .. 32407286

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1258000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGCACATTCTATATCAGAGTTACTCTGATGCTCAGAAGGCTCTTAGCAAGAATGGGATGCAAATTAACGGGGCACTAATTATAGGCGTGAAGCCGCTGGATCCAATGCAACGCCATGCATTAAATGAAAGGGTCAACAATCAGGGTTTCATGACATTTCCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

56

Amino Acids

6.19

Weight (kDa)

9.4

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	1 - 43	8.5e-11	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021163)

Species	Orthologous Gene IDs
malus_domestica	MD07G1258000.v1.1 MD16G1217600.v1.1
pyrus_communis	pycom09g12260 pycom17g19570
rosa_multiflora	Rmu_co8162426.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	95, 108
AlwI	GGATC	2 cut(s)	95, 108
BaeGI	GKGCMC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	2 cut(s)	19, 48
BseGI	GGATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	95, 108
BssMI	GATC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	33, 44
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	63
CciI	TCATGA	1 cut(s)	150
CviAII	CATG	2 cut(s)	116, 151
CviJI	RGCY	2 cut(s)	41, 94
CviKI_1	RGCY	2 cut(s)	41, 94
DdeI	CTNAG	2 cut(s)	33, 44
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	121
FaeI	CATG	2 cut(s)	119, 154
FaiI	YATR	4 cut(s)	13, 83, 117, 152
FatI	CATG	2 cut(s)	115, 150
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	119, 154
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	3 cut(s)	18, 28, 36
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	4 cut(s)	4, 61, 109, 119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	33, 44
Hsp92II	CATG	2 cut(s)	119, 154
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	83, 128
LweI	GCATC	2 cut(s)	19, 48
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	2 cut(s)	63, 78
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	3 cut(s)	66, 122, 166
MspA1I	CMGCKG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	119, 154
NlaIV	GGNNCC	1 cut(s)	102
NsiI	ATGCAT	1 cut(s)	121
PagI	TCATGA	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	100
SaqAI	TTAA	3 cut(s)	66, 122, 166
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	2 cut(s)	19, 48
SgeI	CNNG	7 cut(s)	61, 82, 100, 110, 128, 155, 163
Sse9I	AATT	2 cut(s)	63, 78
SsiI	CCGC	1 cut(s)	95
TasI	AATT	2 cut(s)	63, 78
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	66, 122, 166
Tru9I	TTAA	3 cut(s)	66, 122, 166
TspDTI	ATGAA	2 cut(s)	139, 141
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.