Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0021163

Physical Location & Seq

Genomic Coordinates Forward (+)

21507958 .. 21509036

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1217600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTCCTGGTCCAAGAGATGCCAACTGGATGCACATTCTATATTAGGTTTTTTTTTCTCCATTATTTTGAGTTTGATGAATCAAATTTCTTATATCAAGCATTGATCTTCTCTTCATTTCTTCACCTCTTTGAACTGAGTTACTCTGATGCTCAGAAGGCTCTTAGCAAGAATGGGATGCAAATTAATGGGGCACTAATTATAGGCGTGAAGCCGCTGGATCCAATGCAACACCATGCATTAAATGAAAGGGTCAACAATCAGGGTTTCATGACATTTCCCCCTCAACCATCCATGAAACATGCAGAGATGAATGCTTCAAGAGCCCCCCTTGTCCTTACTATCTTCAAAACGGTAATACCAGCGGGCAGAAATCTGGAGGCGCAATTGCTTCCCGAGCAAAGTCATTGGTGTCCAAAGTCATGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

144

Amino Acids

16.5

Weight (kDa)

6.58

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_Nup35	PF05172	38 - 83	4.7e-07	Nup53/35/40-type RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021163)

Species	Orthologous Gene IDs
malus_domestica	MD07G1258000.v1.1 MD16G1217600.v1.1
pyrus_communis	pycom09g12260 pycom17g19570
rosa_multiflora	Rmu_co8162426.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	215, 365
AclWI	GGATC	2 cut(s)	215, 228
AcsI	RAATTY	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	134, 321, 349
AjnI	CCWGG	1 cut(s)	6
AlwI	GGATC	2 cut(s)	215, 228
Ama87I	CYCGRG	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	85
AseI	ATTAAT	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	196
BamHI	GGATCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	328
BccI	CCATC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	4 cut(s)	9, 20, 139, 168
BpmI	CTGGAG	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	3 cut(s)	35, 183, 290
BseMII	CTCAG	2 cut(s)	128, 167
BseNI	ACTGG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	196, 328
Bsp143I	GATC	2 cut(s)	105, 220
BspACI	CCGC	2 cut(s)	215, 365
BspCNI	CTCAG	2 cut(s)	129, 166
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	2 cut(s)	215, 228
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	105, 220
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	3 cut(s)	137, 153, 164
BstF5I	GGATG	3 cut(s)	35, 183, 290
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	108, 223
BstMBI	GATC	2 cut(s)	105, 220
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 323, 397
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	196
BstX2I	RGATCY	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	35, 183, 290
Cac8I	GCNNGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	1 cut(s)	10
CviAII	CATG	5 cut(s)	236, 271, 295, 302, 423
CviJI	RGCY	3 cut(s)	161, 214, 326
CviKI_1	RGCY	3 cut(s)	161, 214, 326
DdeI	CTNAG	3 cut(s)	137, 153, 164
DpnI	GATC	2 cut(s)	107, 222
DpnII	GATC	2 cut(s)	105, 220
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	328
FaeI	CATG	5 cut(s)	239, 274, 298, 305, 426
FaiI	YATR	8 cut(s)	42, 94, 203, 237, 272, 296, 303, 424
FatI	CATG	5 cut(s)	235, 270, 294, 301, 422
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	3 cut(s)	42, 190, 277
FriOI	GRGCYC	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	215
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	239, 274, 298, 305, 426
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	148, 156
Hpy188III	TCNNGA	4 cut(s)	271, 321, 377, 395
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	5 cut(s)	33, 181, 229, 239, 305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 323, 397
HpyF3I	CTNAG	3 cut(s)	137, 153, 164
Hsp92II	CATG	5 cut(s)	239, 274, 298, 305, 426
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	105, 220
LpnPI	CCDG	6 cut(s)	12, 20, 203, 248, 362, 375
LweI	GCATC	4 cut(s)	9, 20, 139, 168
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	2 cut(s)	107, 222
MboI	GATC	2 cut(s)	105, 220
MboII	GAAGA	4 cut(s)	100, 105, 113, 337
MfeI	CAATTG	1 cut(s)	386
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	2 cut(s)	196, 328
MluCI	AATT	4 cut(s)	85, 183, 198, 386
MnlI	CCTC	3 cut(s)	137, 294, 373
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	3 cut(s)	186, 242, 430
MspA1I	CMGCKG	2 cut(s)	217, 365
MspR9I	CCNGG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	158, 323, 397
NdeII	GATC	2 cut(s)	105, 220
NlaIII	CATG	5 cut(s)	239, 274, 298, 305, 426
NlaIV	GGNNCC	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	241
NspI	RCATGY	1 cut(s)	305
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	186, 242, 430
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	2 cut(s)	105, 220
Sau96I	GGNCC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	2 cut(s)	196, 328
SetI	ASST	2 cut(s)	50, 129
SfaNI	GCATC	4 cut(s)	9, 20, 139, 168
SinI	GGWCC	1 cut(s)	10
Sse9I	AATT	4 cut(s)	85, 183, 198, 386
SsiI	CCGC	2 cut(s)	215, 365
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	355
TasI	AATT	4 cut(s)	85, 183, 198, 386
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	186, 242, 430
Tru9I	TTAA	3 cut(s)	186, 242, 430
TspDTI	ATGAA	6 cut(s)	93, 105, 259, 261, 311, 326
VpaK11BI	GGWCC	1 cut(s)	10
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.