Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0021163

Physical Location & Seq

Genomic Coordinates Forward (+)

10724653 .. 10725605

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCACATTTTATACCAGAGTAACTCTGATGCTCAGAAGGCTCTCAGCAAGAATGGGACGCAAATTAATGGGGCACTAATTATAGGTGTGAAGCCGCTGGATCCAATGCAACGCCATGCATTAAATGAAAAGGTCACCAATCAGGGTTTCATGACATTTCCCCCTCAGCCGTCAATGAAACATGCAGAGCTGAATGCTTCAAGAGCCCCCTCTCGTCCTTACTATCTTCTAAACAGTAATACCAGTGCGCAGAAATCTGGAGGTGCGATTGCTTCCCCAACAAAGTCATTGGTCTCCAAAGTCATGGATTTAATGTTTGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008289 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044613 GO:0044615 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup35_RRM

Protein Analysis

109

Amino Acids

11.69

Weight (kDa)

9.92

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021163)

Species	Orthologous Gene IDs
malus_domestica	MD07G1258000.v1.1 MD16G1217600.v1.1
pyrus_communis	pycom09g12260 pycom17g19570
rosa_multiflora	Rmu_co8162426.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AciI	CCGC	1 cut(s)	95
AclWI	GGATC	2 cut(s)	95, 108
AgsI	TTSAA	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	95, 108
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	298
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	243
BseMII	CTCAG	3 cut(s)	47, 58, 179
BseNI	ACTGG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	76, 208
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	46, 57, 178
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	2 cut(s)	95, 108
BspTNI	GGTCTC	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	236
BstDEI	CTNAG	3 cut(s)	33, 44, 165
BstEII	GGTNACC	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 203
BstNSI	RCATGY	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	250
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	250
CseI	GACGC	1 cut(s)	67
CviAII	CATG	4 cut(s)	116, 151, 182, 304
CviJI	RGCY	5 cut(s)	41, 94, 169, 190, 206
CviKI_1	RGCY	5 cut(s)	41, 94, 169, 190, 206
DdeI	CTNAG	3 cut(s)	33, 44, 165
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	133
EcoO65I	GGTNACC	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	4 cut(s)	119, 154, 185, 307
FaiI	YATR	6 cut(s)	13, 83, 117, 152, 183, 305
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	4 cut(s)	115, 150, 181, 303
Fnu4HI	GCNGC	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	95
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	4 cut(s)	119, 154, 185, 307
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	28, 36
Hpy188III	TCNNGA	3 cut(s)	151, 201, 258
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	4 cut(s)	4, 109, 119, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 203
HpyF3I	CTNAG	3 cut(s)	33, 44, 165
Hsp92II	CATG	4 cut(s)	119, 154, 185, 307
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	29, 83, 128, 243, 256
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	20, 133
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	218
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	2 cut(s)	76, 208
MluCI	AATT	2 cut(s)	63, 78
MnlI	CCTC	3 cut(s)	174, 220, 254
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	4 cut(s)	66, 122, 311, 325
MspA1I	CMGCKG	1 cut(s)	97
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	38, 203
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	119, 154, 185, 307
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	1 cut(s)	185
PagI	TCATGA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	96
PshBI	ATTAAT	1 cut(s)	66
PspEI	GGTNACC	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	100
SaqAI	TTAA	4 cut(s)	66, 122, 311, 325
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	100
SduI	GDGCHC	2 cut(s)	76, 208
SetI	ASST	4 cut(s)	88, 135, 192, 265
SfaNI	GCATC	1 cut(s)	19
Sse9I	AATT	2 cut(s)	63, 78
SsiI	CCGC	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	236
TasI	AATT	2 cut(s)	63, 78
TauI	GCSGC	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	66, 122, 311, 325
Tru9I	TTAA	4 cut(s)	66, 122, 311, 325
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	139, 141, 191
TspRI	CASTG	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	66
XceI	RCATGY	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.