Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0024310

Physical Location & Seq

Genomic Coordinates Forward (+)

33212826 .. 33213290

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1263100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATCACAAGGGGAATCAAGCTCAGAGCGGATCAGCCAATGATTCTGCAAATGCTCGATATTCCACCGGCTGTTGAGGCTTTGAATGGTGTCAAGATGGAGTTGGTGGATGCCGCTTTCCCTCTGCTTAAAGGTGTTGTTGCTACAACTAATGTTGTAGAGGCATGCACTGGAGTCAACATCGCCGTTATGGTGGGTGGCTTCCCAAGGAAAGAAGGCATGGAAAGGAAAGATGTCATGACAAAGAACGTTTCCATCTACAAGTCTCAAGCTTCTGCACTGGAAAAGCATGCCGCTCCCAACTGCAAGGTAAAAAAATATTTAAATGTAACAAAAAATATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

9.52

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	16 - 104	6.4e-17	lactate/malate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0024310)

Species	Orthologous Gene IDs
malus_domestica	MD07G1263100.v1.1 MD09G1256600.v1.1
pyrus_communis	pycom07g09820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	29, 296
AciI	CCGC	3 cut(s)	29, 114, 294
AclI	AACGTT	1 cut(s)	249
AclWI	GGATC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	2 cut(s)	22, 272
AluI	AGCT	2 cut(s)	22, 272
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	39
BccI	CCATC	2 cut(s)	91, 263
BceAI	ACGGC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	270
BisI	GCNGC	2 cut(s)	114, 294
BlsI	GCNGC	2 cut(s)	115, 295
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	175, 285
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	2 cut(s)	175, 285
BsgI	GTGCAG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	3, 31
BspACI	CCGC	3 cut(s)	29, 114, 294
BspCNI	CTCAG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	237
BspPI	GGATC	1 cut(s)	39
BsrBI	CCGCTC	2 cut(s)	29, 296
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	2 cut(s)	175, 285
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	3, 31
BssT1I	CCWWGG	1 cut(s)	206
BstC8I	GCNNGC	2 cut(s)	166, 291
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	6, 34
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	3, 31
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNSI	RCATGY	2 cut(s)	168, 293
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	168, 278
Cac8I	GCNNGC	2 cut(s)	166, 291
CciI	TCATGA	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	67
CviAII	CATG	4 cut(s)	165, 220, 238, 290
CviJI	RGCY	6 cut(s)	22, 37, 71, 80, 201, 272
CviKI_1	RGCY	6 cut(s)	22, 37, 71, 80, 201, 272
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	5, 33
DpnII	GATC	2 cut(s)	3, 31
DraI	TTTAAA	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	4 cut(s)	168, 223, 241, 293
FaiI	YATR	5 cut(s)	166, 191, 221, 239, 291
FatI	CATG	4 cut(s)	164, 219, 237, 289
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	114, 294
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	114, 294
GluI	GCNGC	2 cut(s)	114, 294
GsuI	CTGGAG	1 cut(s)	192
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	4 cut(s)	168, 223, 241, 293
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	3 cut(s)	15, 43, 174
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	2 cut(s)	94, 238
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	49, 168, 278, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	168, 223, 241, 293
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 31
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	3 cut(s)	81, 156, 266
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	5, 33
MbiI	CCGCTC	2 cut(s)	29, 296
MboI	GATC	2 cut(s)	3, 31
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	70, 132, 154
MseI	TTAA	2 cut(s)	129, 323
MspI	CCGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	2 cut(s)	3, 31
NlaIII	CATG	4 cut(s)	168, 223, 241, 293
NspI	RCATGY	2 cut(s)	168, 293
PaeI	GCATGC	2 cut(s)	168, 293
PagI	TCATGA	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	15, 43
PkrI	GCNGC	2 cut(s)	115, 295
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp1406I	AACGTT	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	129, 323
SatI	GCNGC	2 cut(s)	114, 294
Sau3AI	GATC	2 cut(s)	3, 31
SchI	GAGTC	1 cut(s)	183
SetI	ASST	5 cut(s)	24, 136, 252, 274, 312
SfaNI	GCATC	1 cut(s)	100
SmiI	ATTTAAAT	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SphI	GCATGC	2 cut(s)	168, 293
SsiI	CCGC	3 cut(s)	29, 114, 294
SspI	AATATT	2 cut(s)	320, 340
StyI	CCWWGG	1 cut(s)	206
SwaI	ATTTAAAT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	57
TauI	GCSGC	2 cut(s)	116, 296
TfiI	GAWTC	2 cut(s)	15, 43
Tru1I	TTAA	2 cut(s)	129, 323
Tru9I	TTAA	2 cut(s)	129, 323
TscAI	CASTG	2 cut(s)	175, 285
TspRI	CASTG	2 cut(s)	175, 285
XceI	RCATGY	2 cut(s)	168, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.