Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024310

Physical Location & Seq

Genomic Coordinates Forward (+)

9325328 .. 9325886

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGACAAATTGGGTATGCGCTTGTGCCAATGATCGCAACGGGAATCATGCTCGGAGCGGATCAGCCAGTGATTCTGCACTTGCTCGATATTCCACCGGCTGCTGAGGCTTTGAATGGTGTCAAGATGGAGTTGGTGGGTGCCACTTTCCCTCTGCTTAAAGGTGTTGTTCCTACAACTGATGTTGTAGAGGCATGCACTGGAGTCAACATCGCCGTGATGGTGGGTGGCTTCCCAAGGAAAGAAGGCATGGAAAGGAAAGATGTCATGACAACGAACGTTTCCATCTACAAGTCCCAAGCTTCTGCACTGGAAAAGCATGCCGCGCCCAACTGCAAGGTAAAAAAATATTTAAATGTAACAAAAATTATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

126

Amino Acids

13.29

Weight (kDa)

8.95

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	3 - 114	7.6e-17	lactate/malate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024310)

Species	Orthologous Gene IDs
malus_domestica	MD07G1263100.v1.1 MD09G1256600.v1.1
pyrus_communis	pycom07g09820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	1 cut(s)	326
AciI	CCGC	2 cut(s)	59, 324
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
AlwI	GGATC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	101
AspLEI	GCGC	2 cut(s)	22, 328
BanI	GGYRCC	1 cut(s)	140
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	3 cut(s)	121, 214, 293
BceAI	ACGGC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	102, 324
BlsI	GCNGC	2 cut(s)	103, 325
BmiI	GGNNCC	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	3 cut(s)	68, 205, 315
BseDI	CCNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	3 cut(s)	68, 205, 315
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	2 cut(s)	62, 291
Bsh1236I	CGCG	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	33, 61
BspACI	CCGC	2 cut(s)	59, 324
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	326
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	3 cut(s)	68, 205, 315
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	2 cut(s)	33, 61
BssT1I	CCWWGG	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	196, 321
BstDEI	CTNAG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	2 cut(s)	22, 328
BstKTI	GATC	2 cut(s)	36, 64
BstMBI	GATC	2 cut(s)	33, 61
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 325
BstNSI	RCATGY	2 cut(s)	198, 323
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	196
BtsIMutI	CAGTG	3 cut(s)	75, 198, 308
Cac8I	GCNNGC	2 cut(s)	196, 321
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	2 cut(s)	22, 328
Cfr10I	RCCGGY	1 cut(s)	97
CviAII	CATG	5 cut(s)	49, 195, 250, 268, 320
CviJI	RGCY	5 cut(s)	67, 101, 110, 231, 302
CviKI_1	RGCY	5 cut(s)	67, 101, 110, 231, 302
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	2 cut(s)	35, 63
DpnII	GATC	2 cut(s)	33, 61
DraI	TTTAAA	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	236
FaeI	CATG	5 cut(s)	52, 198, 253, 271, 323
FaiI	YATR	6 cut(s)	18, 50, 196, 251, 269, 321
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	5 cut(s)	48, 194, 249, 267, 319
Fnu4HI	GCNGC	2 cut(s)	102, 324
Fsp4HI	GCNGC	2 cut(s)	102, 324
GlaI	GCGC	2 cut(s)	21, 327
GluI	GCNGC	2 cut(s)	102, 324
GsuI	CTGGAG	1 cut(s)	222
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	2 cut(s)	22, 328
Hin1II	CATG	5 cut(s)	52, 198, 253, 271, 323
Hin6I	GCGC	2 cut(s)	20, 326
HinP1I	GCGC	2 cut(s)	20, 326
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	3 cut(s)	45, 73, 204
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	2 cut(s)	124, 268
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	79, 198, 308, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 325
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	5 cut(s)	52, 198, 253, 271, 323
HspAI	GCGC	2 cut(s)	20, 326
Kzo9I	GATC	2 cut(s)	33, 61
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	4 cut(s)	81, 111, 186, 296
Lsp1109I	GCAGC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	2 cut(s)	35, 63
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	33, 61
MluCI	AATT	2 cut(s)	9, 366
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	100, 162, 184
MseI	TTAA	2 cut(s)	159, 353
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	107, 325
NdeII	GATC	2 cut(s)	33, 61
NlaIII	CATG	5 cut(s)	52, 198, 253, 271, 323
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	2 cut(s)	198, 323
PaeI	GCATGC	2 cut(s)	198, 323
PagI	TCATGA	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	45, 73
PkrI	GCNGC	2 cut(s)	103, 325
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp1406I	AACGTT	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	159, 353
SatI	GCNGC	2 cut(s)	102, 324
Sau3AI	GATC	2 cut(s)	33, 61
SchI	GAGTC	1 cut(s)	213
SetI	ASST	4 cut(s)	166, 282, 304, 342
SmiI	ATTTAAAT	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	215
SphI	GCATGC	2 cut(s)	198, 323
Sse9I	AATT	2 cut(s)	9, 366
SsiI	CCGC	2 cut(s)	59, 324
SspI	AATATT	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	236
SwaI	ATTTAAAT	1 cut(s)	354
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	9, 366
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	45, 73
Tru1I	TTAA	2 cut(s)	159, 353
Tru9I	TTAA	2 cut(s)	159, 353
TscAI	CASTG	3 cut(s)	75, 205, 315
TseI	GCWGC	1 cut(s)	101
TspRI	CASTG	3 cut(s)	75, 205, 315
XceI	RCATGY	2 cut(s)	198, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.