Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0024310

Physical Location & Seq

Genomic Coordinates Reverse (-)

32831945 .. 32832312

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1256600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCGAAAGAAACAGCTTGCATCCTAGTTACAAGAGTCGTAGCGTCATGGTGGGTAGGTAGCTTCCCAAGGAAAGAAGGCATGGTAAGGAAAGACATCATGACAAAGAACATTTCCATCCACAAGTCCCAAGCTTCTGCATTGGAAAATCAAGCAGCTCCTGACTGCAAGGTAAAAATAGGGGTGTGCTATCCACACATTCCATTTTACTTTTCATACACCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0034641 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00270 ko00620 ko00630 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04964 map00020 map00270 map00620 map00630 map00710 map01100 map01110 map01120 map01130 map01200 map04964

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

76

Amino Acids

8.46

Weight (kDa)

9.37

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ldh_1_N	PF00056	19 - 59	5.2e-06	lactate/malate dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024310)

Species	Orthologous Gene IDs
malus_domestica	MD07G1263100.v1.1 MD09G1256600.v1.1
pyrus_communis	pycom07g09820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	4 cut(s)	17, 63, 134, 158
AluI	AGCT	4 cut(s)	17, 63, 134, 158
AlwNI	CAGNNNCTG	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	2 cut(s)	21, 117
BseXI	GCAGC	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BspHI	TCATGA	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	21, 117
BstV1I	GCAGC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	21, 117
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	1 cut(s)	161
CciI	TCATGA	1 cut(s)	99
CseI	GACGC	1 cut(s)	33
CviAII	CATG	3 cut(s)	48, 82, 100
CviJI	RGCY	4 cut(s)	17, 63, 134, 158
CviKI_1	RGCY	4 cut(s)	17, 63, 134, 158
Eco130I	CCWWGG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	51, 85, 103
FaiI	YATR	4 cut(s)	49, 83, 101, 217
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	3 cut(s)	47, 81, 99
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	2 cut(s)	8, 104
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	51, 85, 103
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	100, 161
HpyAV	CCTTC	1 cut(s)	71
HpyCH4V	TGCA	3 cut(s)	21, 140, 168
Hsp92II	CATG	3 cut(s)	51, 85, 103
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	51, 85, 103
PagI	TCATGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	157
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PstNI	CAGNNNCTG	1 cut(s)	161
SatI	GCNGC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	45
SetI	ASST	6 cut(s)	19, 61, 65, 136, 160, 174
SfaNI	GCATC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	68
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	204
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.