Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0022011

Physical Location & Seq

Genomic Coordinates Reverse (-)

34435015 .. 34437723

Gene Structure 2709 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1280500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGTCTATAGCAAAAATCACCAGGTTCGTTGTCAACACAAATGAAGTTAACTGTTTCAAAGAAACTTGCCTCCGGGTTCTTTCAGCATGCAACTCACAGTCCCTGCCGGAGGGCATCTGTGTGCACAGCCCAATTACCAAACTGGGTCTTGACGATGACCTCTACTTAACCAACAACCTGCTGTCTCTCTATGCAAAATGCTCTGGAGTTGAGTCTGCACGCCACTTGTTCGATGAAATGCCTCGCAGAGATGTTGTGTCATGGACAGGGATGCTGTCCGCGTATGTCAGGAACGGACACTATCATGACTCGCTTGAATTCTTTGATTCGATGATTGTTTCCGGTCAGTGCCCCAATGAGTTTACACTCTCAAGTGTCTTAAAATCGTGCTCGTTGTTGGGAGAGTTGGATTATGGGACTCGAATCCATACATTTGTGATCAAGCTTGGATTCGAGCCAAATCAATTTCTTGGCAGCAGTATGATTGATTTGTATGCCAAGTGTGGTTTAACCGAAGAGGCTTGTAAGATATTTAGGGATATGGAGAGTGGTGATACTGTTTCTTGGACTGCAATCATCTCTTCATTGGTCCAAGCTCAGAAATGGAGACAGGCTCTAGGCTACTACATAGATATGATATATGCTGCTAGGGTTCATCCAAATGAGTTCACTTTCGTAAAACTTTTCGCTGCATCCTGCTCTCTTGGTTTGAACTATGGGAAATTACTACATGCCCATTTGATAAGATTCGGAATGAGGCTGAATCTGGTCTTGAAGACGGCCATGGTCAATATGTACTCGAAATGCCAGAAGATGGAAGATGCTATCAAGGTGTTGAATCAAACACCTGAATATGATGTGTTGTTGTGGACCTCTGTTATTTCTGGCTTCACTCAAAGTTTGAGAGTCGCGGACGCTGTTGCTGCATTGCACAAGATGGAGCTCTCTGGAATTGTACCAAATAATTTTACATACTCTAGTATGCTGAAAGCTTGCTCAGCGGTTTTGTCACTGGAATTAGGAAAGCAGATCCATTTGCAGGTGCTCAAGGCTGGATTGGAGGATGATACTTGTGCAGGAGGTGCACTAGTTGATATGTACTTGAAATGTTCTGACCTCATAGAAGATGGTTTGAGAGCGTTTAGGGAGATAACATCGCCGAGTGTCATCACTTGGACTTCATTGATTGCCGGTTTTGCTGAACACGGTTTTGAACAAGATTCTTTTCAGTATTTTCTGGAGATGCGAACAGTAGGAGTCGAGCCAAATTCCTTTACTTTCTCTAGCATTCTTCGTGCCTGCAGTACTGTTAAATCTCTTAGTCAGACACAAAAAATCCATGGACGTATAGTTAAAACCAAAGCGGGCAGTGATATAGCTGTTGGGAATGCTCTTGTGGATGCTTATGCTGCGCTGGGGATGGTGGATGATGCGTGGCATGTGATTAACTCCATGATCCATCGAGATGCTATCACGTATACAGGTTTAGCCACACGAATGAATCAGCTAGGTAATTATGAAATTGCACTGGATCTCATCACCCGTATGCAGACTGATGACGTTATGATGGATCGGTTTAGCCTTGCAAGCTTCTTATCTGCATCAGCTGGCTTGGCATCAATGGAAACTGGGAAGCAACTTCATTGCTATTCTATCAAAGCCGGTTTAGGCAGTGGGATATCAGTTTTGAATGCCTTAGTAGACTTATATGGGAAATGTGGGTGCAGAGATGATGCACACAGAGCTTTCAGTGAGATCTCTGAGCCGGATATAGTGTCATGGAACTGCTTGATTTCTGGATTGGCATCGAGTGGATATATTTCATCCGCTCTCTCTTCCTTTGACAATATGAGGTTGGCAGGTTTTAAACCTGATTCCATTACATTCCTGTTGGTGCTTTTCGCTTGCAGCCATGGCGGTTTGGTTGAACTAGGTCTTGAGCATTTTCAGTCAATGAGAGAAAAGTATGATATAGCTCCACAACTGGATCACTATTCCTGTTTAGTTGATCTCCTTGGCAGAGCCGGGCGACTAGAGGATGCCATGGAAGCGATCATGACCATGCCCTTTAAGCCAGATGCCTTAATTTACAAGACACTATTGGCTGCCTGCAAGTTACATAAAAACATTTCCCTCGGGGAATATACAGCGAGGCGAGGGATGGAACTTGACCCGTCTGATCCAGCTTTTTACGTGCTGCTTGCAAGTTTGTATGATGATTCTGGTCAGCCGGATTTAGCCAAAAGTACACGACAAGCAATGAGGGAGAGGGGATTGAAGAAGAATGTCGGGCAGTGCTGGATGGAAATAAGGAACAGGGTTCATCTCTTCGATGCAGGAGATCGATCACATCCACAGATAAATGAAATCCATGAGAAGGTAAAGTCACTTATTACGGAGTTGAAGAAGAGAGGATACTCATATCAAGACTACGAAGATTCATCGTATCACATTGAGAAGTTAGCTGTTGCATTCGGTCTTCTCAAAACACCGCGTAACGCCTCCATACGCGTGTCTAAGAATGTGCGCATATGCGGCGAATGCCATAGCTTTATAACGCTTGTAACTCAATTTGTTGATCGCGAGATCATTGTGAGGGACGGGAACCGGTTGCATATCTTCAACAAGGGTGAGTGCTCGTGTAAGGGTGCAGGTAATTTGCAGCATAAGGATTGCATGGACGAAAATGTTAGCCTGTTGACGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

903

Amino Acids

100.22

Weight (kDa)

6.21

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	83 - 130	5.4e-09	PPR repeat family
PPR_2	PF13041	286 - 333	4.2e-09	PPR repeat family
PPR_2	PF13041	387 - 435	5.3e-09	PPR repeat family
PPR_3	PF13812	387 - 434	7.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	589 - 636	6.6e-10	PPR repeat family
E_motif	PF20431	707 - 769	2.2e-06	E motif
Eplus_motif	PF20430	774 - 801	5.6e-06	E+ motif
DYW_deaminase	PF14432	816 - 883	2e-25	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52850
malus_domestica	MD07G1280500.v1.1
prunus_persica	Prupe.2G302700_v2.0.a1
pyrus_communis	pycom07g25510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2555
AarI	CACCTGC	1 cut(s)	1030
Acc16I	TGCGCA	1 cut(s)	2528
Acc36I	ACCTGC	4 cut(s)	186, 1030, 1850, 2642
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccBSI	CCGCTC	1 cut(s)	1829
AccI	GTMKAC	2 cut(s)	1478, 1701
AccII	CGCG	5 cut(s)	281, 911, 2494, 2511, 2583
AciI	CCGC	8 cut(s)	279, 911, 1001, 1364, 1827, 1917, 2492, 2535
AclWI	GGATC	6 cut(s)	1024, 1450, 1539, 1578, 1995, 2174
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	2 cut(s)	317, 1267
AfaI	GTAC	5 cut(s)	797, 957, 1100, 1306, 2248
AfiI	CCNNNNNNNGG	4 cut(s)	109, 814, 1039, 2377
AflIII	ACRYGT	1 cut(s)	2509
AgeI	ACCGGT	1 cut(s)	2607
AhlI	ACTAGT	1 cut(s)	1087
AjnI	CCWGG	1 cut(s)	20
Alw21I	GWGCWC	6 cut(s)	126, 392, 945, 1047, 1087, 2639
Alw26I	GTCTC	2 cut(s)	189, 601
Alw44I	GTGCAC	2 cut(s)	122, 1083
AlwI	GGATC	6 cut(s)	1024, 1450, 1539, 1578, 1995, 2174
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	2135
AoxI	GGCC	1 cut(s)	780
ApaLI	GTGCAC	2 cut(s)	122, 1083
ApeKI	GCWGC	9 cut(s)	474, 644, 689, 923, 1409, 1908, 2105, 2197, 2662
ApoI	RAATTY	2 cut(s)	317, 1267
AsiGI	ACCGGT	1 cut(s)	2607
AspLEI	GCGC	2 cut(s)	1414, 2529
AspS9I	GGNCC	2 cut(s)	589, 870
AsuC2I	CCSGG	2 cut(s)	74, 2026
AsuHPI	GGTGA	4 cut(s)	10, 563, 1531, 2642
AvaI	CYCGRG	1 cut(s)	2135
AvaII	GGWCC	2 cut(s)	589, 870
BaeGI	GKGCMC	3 cut(s)	126, 353, 1087
BanII	GRGCYC	1 cut(s)	945
BarI	GAAGNNNNNNTAC	2 cut(s)	2399, 2431
BauI	CACGAG	1 cut(s)	2638
BbsI	GAAGAC	2 cut(s)	782, 2471
Bbv12I	GWGCWC	6 cut(s)	126, 392, 945, 1047, 1087, 2639
BbvI	GCAGC	9 cut(s)	486, 631, 676, 910, 1396, 1920, 2092, 2184, 2674
BccI	CCATC	8 cut(s)	808, 931, 1121, 1414, 1467, 1561, 2155, 2296
BceAI	ACGGC	1 cut(s)	795
BciT130I	CCWGG	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	2408
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	2 cut(s)	74, 2026
BcoDI	GTCTC	2 cut(s)	189, 601
BcuI	ACTAGT	1 cut(s)	1087
BfaI	CTAG	8 cut(s)	617, 648, 978, 1088, 1284, 1508, 1931, 2033
BfmI	CTRYAG	2 cut(s)	6, 1300
BfuAI	ACCTGC	4 cut(s)	186, 1030, 1850, 2642
BfuI	GTATCC	1 cut(s)	2408
BglII	AGATCT	1 cut(s)	1755
BlpI	GCTNAGC	1 cut(s)	997
BmcAI	AGTACT	1 cut(s)	1306
Bme1390I	CCNGG	3 cut(s)	22, 74, 2026
Bme18I	GGWCC	2 cut(s)	589, 870
BmeT110I	CYCGRG	1 cut(s)	2135
BmgT120I	GGNCC	2 cut(s)	589, 870
BmiI	GGNNCC	1 cut(s)	2606
BmrFI	CCNGG	3 cut(s)	22, 74, 2026
BmrI	ACTGGG	2 cut(s)	152, 1638
BmuI	ACTGGG	2 cut(s)	152, 1638
BpiI	GAAGAC	2 cut(s)	782, 2471
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
BpmI	CTGGAG	2 cut(s)	225, 1259
Bpu1102I	GCTNAGC	1 cut(s)	997
BpuEI	CTTGAG	3 cut(s)	355, 1031, 1958
BpuMI	CCSGG	2 cut(s)	74, 2026
Bsa29I	ATCGAT	1 cut(s)	2344
BsaAI	YACGTR	2 cut(s)	1476, 2194
BsaBI	GATNNNNATC	1 cut(s)	1804
BsaJI	CCNNGG	6 cut(s)	783, 1339, 1912, 2014, 2043, 2134
BsaWI	WCCGGW	2 cut(s)	341, 2607
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 814, 1039, 2377
Bse118I	RCCGGY	3 cut(s)	1190, 1661, 2607
Bse1I	ACTGG	5 cut(s)	147, 1017, 1533, 1633, 1989
Bse3DI	GCAATG	3 cut(s)	926, 1642, 2265
Bse8I	GATNNNNATC	1 cut(s)	1804
BseBI	CCWGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	2344
BseDI	CCNNGG	6 cut(s)	783, 1339, 1912, 2014, 2043, 2134
BseJI	GATNNNNATC	1 cut(s)	1804
BseLI	CCNNNNNNNGG	4 cut(s)	109, 814, 1039, 2377
BseMI	GCAATG	3 cut(s)	926, 1642, 2265
BseMII	CTCAG	3 cut(s)	611, 1011, 1752
BseNI	ACTGG	5 cut(s)	147, 1017, 1533, 1633, 1989
BseSI	GKGCMC	3 cut(s)	126, 353, 1087
BseXI	GCAGC	9 cut(s)	486, 631, 676, 910, 1396, 1920, 2092, 2184, 2674
BseYI	CCCAGC	1 cut(s)	1414
BsgI	GTGCAG	4 cut(s)	201, 1095, 1744, 2670
Bsh1236I	CGCG	5 cut(s)	281, 911, 2494, 2511, 2583
BshFI	GGCC	1 cut(s)	782
BshTI	ACCGGT	1 cut(s)	2607
BshVI	ATCGAT	1 cut(s)	2344
BsiHKAI	GWGCWC	6 cut(s)	126, 392, 945, 1047, 1087, 2639
BsiHKCI	CYCGRG	1 cut(s)	2135
BsiSI	CCGG	9 cut(s)	73, 107, 342, 1191, 1662, 1766, 2025, 2231, 2608
BslFI	GGGAC	3 cut(s)	85, 430, 2612
BslI	CCNNNNNNNGG	4 cut(s)	109, 814, 1039, 2377
BsmAI	GTCTC	2 cut(s)	189, 601
BsmFI	GGGAC	3 cut(s)	85, 430, 2612
BsmI	GAATGC	5 cut(s)	1287, 1393, 1696, 2471, 2546
BsnI	GGCC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	2135
Bsp1286I	GDGCHC	7 cut(s)	126, 353, 392, 945, 1047, 1087, 2639
Bsp1720I	GCTNAGC	1 cut(s)	997
Bsp19I	CCATGG	4 cut(s)	783, 1339, 1912, 2043
Bsp68I	TCGCGA	1 cut(s)	2583
BspACI	CCGC	8 cut(s)	279, 911, 1001, 1364, 1827, 1917, 2492, 2535
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	3 cut(s)	610, 1010, 1753
BspDI	ATCGAT	1 cut(s)	2344
BspFNI	CGCG	5 cut(s)	281, 911, 2494, 2511, 2583
BspHI	TCATGA	2 cut(s)	304, 2055
BspLI	GGNNCC	1 cut(s)	2606
BspMAI	CTGCAG	1 cut(s)	1304
BspMI	ACCTGC	4 cut(s)	186, 1030, 1850, 2642
BspPI	GGATC	6 cut(s)	1024, 1450, 1539, 1578, 1995, 2174
BsrBI	CCGCTC	1 cut(s)	1829
BsrDI	GCAATG	3 cut(s)	926, 1642, 2265
BsrFI	RCCGGY	3 cut(s)	1190, 1661, 2607
BsrI	ACTGG	5 cut(s)	147, 1017, 1533, 1633, 1989
BssAI	RCCGGY	3 cut(s)	1190, 1661, 2607
BssECI	CCNNGG	6 cut(s)	783, 1339, 1912, 2014, 2043, 2134
BssNAI	GTATAC	1 cut(s)	1479
BssSI	CACGAG	1 cut(s)	2638
BssT1I	CCWWGG	5 cut(s)	783, 1339, 1912, 2014, 2043
Bst1107I	GTATAC	1 cut(s)	1479
Bst2BI	CACGAG	1 cut(s)	2638
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	6 cut(s)	53, 99, 559, 1208, 1252, 1309
Bst6I	CTCTTC	5 cut(s)	510, 586, 1840, 2333, 2402
BstAPI	GCANNNNNTGC	1 cut(s)	1082
BstBAI	YACGTR	2 cut(s)	1476, 2194
BstDEI	CTNAG	6 cut(s)	597, 997, 1319, 1696, 1761, 2517
BstDSI	CCRYGG	4 cut(s)	783, 1339, 1912, 2043
BstENI	CCTNNNNNAGG	1 cut(s)	107
BstFNI	CGCG	5 cut(s)	281, 911, 2494, 2511, 2583
BstHHI	GCGC	2 cut(s)	1414, 2529
BstMAI	GTCTC	2 cut(s)	189, 601
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	3 cut(s)	90, 734, 1442
BstSCI	CCNGG	3 cut(s)	20, 72, 2024
BstSFI	CTRYAG	2 cut(s)	6, 1300
BstSLI	GKGCMC	3 cut(s)	126, 353, 1087
BstUI	CGCG	5 cut(s)	281, 911, 2494, 2511, 2583
BstV1I	GCAGC	9 cut(s)	486, 631, 676, 910, 1396, 1920, 2092, 2184, 2674
BstV2I	GAAGAC	2 cut(s)	782, 2471
BstX2I	RGATCY	3 cut(s)	1029, 1531, 1755
BstYI	RGATCY	3 cut(s)	1029, 1531, 1755
BstZ17I	GTATAC	1 cut(s)	1479
Bsu15I	ATCGAT	1 cut(s)	2344
BsuI	GTATCC	1 cut(s)	2408
BsuRI	GGCC	1 cut(s)	782
BsuTUI	ATCGAT	1 cut(s)	2344
BtgI	CCRYGG	4 cut(s)	783, 1339, 1912, 2043
BtgZI	GCGATG	1 cut(s)	1140
BtsI	GCAGTG	3 cut(s)	1375, 1678, 2300
BtsIMutI	CAGTG	7 cut(s)	353, 1010, 1375, 1526, 1678, 1756, 2300
BtuMI	TCGCGA	1 cut(s)	2583
BveI	ACCTGC	4 cut(s)	186, 1030, 1850, 2642
CaiI	CAGNNNCTG	1 cut(s)	103
CciI	TCATGA	2 cut(s)	304, 2055
CfoI	GCGC	2 cut(s)	1414, 2529
Cfr10I	RCCGGY	3 cut(s)	1190, 1661, 2607
Cfr13I	GGNCC	2 cut(s)	589, 870
ClaI	ATCGAT	1 cut(s)	2344
CseI	GACGC	1 cut(s)	923
CsiI	ACCWGGT	1 cut(s)	20
Csp6I	GTAC	5 cut(s)	796, 956, 1099, 1305, 2247
CspAI	ACCGGT	1 cut(s)	2607
CviQI	GTAC	5 cut(s)	796, 956, 1099, 1305, 2247
DdeI	CTNAG	6 cut(s)	597, 997, 1319, 1696, 1761, 2517
DraI	TTTAAA	1 cut(s)	1867
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	5 cut(s)	510, 586, 1840, 2333, 2402
EarI	CTCTTC	5 cut(s)	510, 586, 1840, 2333, 2402
Ecl136II	GAGCTC	1 cut(s)	943
Eco130I	CCWWGG	5 cut(s)	783, 1339, 1912, 2014, 2043
Eco24I	GRGCYC	1 cut(s)	945
Eco32I	GATATC	1 cut(s)	1680
Eco47I	GGWCC	2 cut(s)	589, 870
Eco53kI	GAGCTC	1 cut(s)	943
Eco88I	CYCGRG	1 cut(s)	2135
EcoICRI	GAGCTC	1 cut(s)	943
EcoNI	CCTNNNNNAGG	1 cut(s)	107
EcoRI	GAATTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	1680
EcoT14I	CCWWGG	5 cut(s)	783, 1339, 1912, 2014, 2043
EcoT38I	GRGCYC	1 cut(s)	945
ErhI	CCWWGG	5 cut(s)	783, 1339, 1912, 2014, 2043
FaqI	GGGAC	3 cut(s)	85, 430, 2612
FauI	CCCGC	1 cut(s)	1357
FauNDI	CATATG	1 cut(s)	2531
FbaI	TGATCA	1 cut(s)	438
FblI	GTMKAC	2 cut(s)	1478, 1701
FriOI	GRGCYC	1 cut(s)	945
FspAI	RTGCGCAY	1 cut(s)	2528
FspBI	CTAG	8 cut(s)	617, 648, 978, 1088, 1284, 1508, 1931, 2033
FspI	TGCGCA	1 cut(s)	2528
GlaI	GCGC	2 cut(s)	1413, 2528
GsaI	CCCAGC	1 cut(s)	1418
GsuI	CTGGAG	2 cut(s)	225, 1259
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	9 cut(s)	73, 107, 342, 1191, 1662, 1766, 2025, 2231, 2608
HgaI	GACGC	1 cut(s)	923
HhaI	GCGC	2 cut(s)	1414, 2529
Hin6I	GCGC	2 cut(s)	1412, 2527
HinP1I	GCGC	2 cut(s)	1412, 2527
HincII	GTYRAC	3 cut(s)	34, 49, 2700
HindII	GTYRAC	3 cut(s)	34, 49, 2700
HindIII	AAGCTT	3 cut(s)	443, 990, 1588
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	9 cut(s)	73, 107, 342, 1191, 1662, 1766, 2025, 2231, 2608
HphI	GGTGA	4 cut(s)	10, 563, 1531, 2642
Hpy188I	TCNGA	6 cut(s)	600, 752, 1114, 1326, 1762, 2179
HpyAV	CCTTC	1 cut(s)	2371
HpyCH4III	ACNGT	6 cut(s)	53, 99, 559, 1208, 1252, 1309
HpyCH4IV	ACGT	4 cut(s)	1345, 1475, 1560, 2193
HpyF3I	CTNAG	6 cut(s)	597, 997, 1319, 1696, 1761, 2517
HpySE526I	ACGT	4 cut(s)	1345, 1475, 1560, 2193
HspAI	GCGC	2 cut(s)	1412, 2527
Ksp22I	TGATCA	1 cut(s)	438
KspAI	GTTAAC	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	940, 1981
Lsp1109I	GCAGC	9 cut(s)	486, 631, 676, 910, 1396, 1920, 2092, 2184, 2674
MabI	ACCWGGT	1 cut(s)	20
MaeI	CTAG	8 cut(s)	617, 648, 978, 1088, 1284, 1508, 1931, 2033
MaeII	ACGT	4 cut(s)	1345, 1475, 1560, 2193
MaeIII	GTNAC	5 cut(s)	1008, 2115, 2385, 2495, 2563
MbiI	CCGCTC	1 cut(s)	1829
MflI	RGATCY	3 cut(s)	1029, 1531, 1755
MhlI	GDGCHC	7 cut(s)	126, 353, 392, 945, 1047, 1087, 2639
MluI	ACGCGT	1 cut(s)	2509
MlyI	GAGTC	5 cut(s)	221, 302, 412, 915, 1266
MmeI	TCCRAC	1 cut(s)	387
MslI	CAYNNNNRTG	9 cut(s)	119, 303, 632, 660, 1464, 1496, 1544, 2060, 2510
MspA1I	CMGCKG	2 cut(s)	1001, 1607
MspI	CCGG	9 cut(s)	73, 107, 342, 1191, 1662, 1766, 2025, 2231, 2608
MspR9I	CCNGG	3 cut(s)	22, 74, 2026
Mva1269I	GAATGC	5 cut(s)	1287, 1393, 1696, 2471, 2546
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	5 cut(s)	281, 911, 2494, 2511, 2583
NciI	CCSGG	2 cut(s)	74, 2026
NcoI	CCATGG	4 cut(s)	783, 1339, 1912, 2043
NdeI	CATATG	1 cut(s)	2531
NlaIV	GGNNCC	1 cut(s)	2606
NmeAIII	GCCGAG	1 cut(s)	1185
NmuCI	GTSAC	2 cut(s)	1008, 2385
NruI	TCGCGA	1 cut(s)	2583
NsbI	TGCGCA	1 cut(s)	2528
NspI	RCATGY	3 cut(s)	90, 734, 1442
PaeI	GCATGC	1 cut(s)	90
PagI	TCATGA	2 cut(s)	304, 2055
PaqCI	CACCTGC	1 cut(s)	1030
PctI	GAATGC	5 cut(s)	1287, 1393, 1696, 2471, 2546
PflMI	CCANNNNNTGG	1 cut(s)	814
PinAI	ACCGGT	1 cut(s)	2607
PleI	GAGTC	5 cut(s)	220, 302, 412, 914, 1265
PpsI	GAGTC	5 cut(s)	220, 302, 412, 914, 1265
Ppu21I	YACGTR	2 cut(s)	1476, 2194
PsiI	TTATAA	1 cut(s)	2555
Psp124BI	GAGCTC	1 cut(s)	945
Psp6I	CCWGG	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	1414
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	2606
PspPI	GGNCC	2 cut(s)	589, 870
PstI	CTGCAG	1 cut(s)	1304
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	3 cut(s)	1029, 1531, 1755
PvuII	CAGCTG	1 cut(s)	1607
RruI	TCGCGA	1 cut(s)	2583
RsaI	GTAC	5 cut(s)	797, 957, 1100, 1306, 2248
RsaNI	GTAC	5 cut(s)	796, 956, 1099, 1305, 2247
RseI	CAYNNNNRTG	9 cut(s)	119, 303, 632, 660, 1464, 1496, 1544, 2060, 2510
SacI	GAGCTC	1 cut(s)	945
Sau96I	GGNCC	2 cut(s)	589, 870
ScaI	AGTACT	1 cut(s)	1306
SchI	GAGTC	5 cut(s)	221, 302, 412, 915, 1266
ScrFI	CCNGG	3 cut(s)	22, 74, 2026
SduI	GDGCHC	7 cut(s)	126, 353, 392, 945, 1047, 1087, 2639
SexAI	ACCWGGT	1 cut(s)	20
SfcI	CTRYAG	2 cut(s)	6, 1300
SinI	GGWCC	2 cut(s)	589, 870
SmiMI	CAYNNNNRTG	9 cut(s)	119, 303, 632, 660, 1464, 1496, 1544, 2060, 2510
SmlI	CTYRAG	3 cut(s)	370, 1046, 1937
SmoI	CTYRAG	3 cut(s)	370, 1046, 1937
SpeI	ACTAGT	1 cut(s)	1087
SphI	GCATGC	1 cut(s)	90
SsiI	CCGC	8 cut(s)	279, 911, 1001, 1364, 1827, 1917, 2492, 2535
SspMI	CTAG	8 cut(s)	617, 648, 978, 1088, 1284, 1508, 1931, 2033
SstI	GAGCTC	1 cut(s)	945
StyD4I	CCNGG	3 cut(s)	20, 72, 2024
StyI	CCWWGG	5 cut(s)	783, 1339, 1912, 2014, 2043
TaaI	ACNGT	6 cut(s)	53, 99, 559, 1208, 1252, 1309
TaiI	ACGT	4 cut(s)	1348, 1478, 1563, 2196
TaqII	GACCGA	1 cut(s)	2465
TatI	WGTACW	4 cut(s)	795, 1098, 1304, 2246
TauI	GCSGC	1 cut(s)	2538
TscAI	CASTG	7 cut(s)	353, 1017, 1375, 1533, 1678, 1756, 2300
TseFI	GTSAC	2 cut(s)	1008, 2385
TseI	GCWGC	9 cut(s)	474, 644, 689, 923, 1409, 1908, 2105, 2197, 2662
Tsp45I	GTSAC	2 cut(s)	1008, 2385
TspGWI	ACGGA	2 cut(s)	309, 2411
TspRI	CASTG	7 cut(s)	353, 1017, 1375, 1533, 1678, 1756, 2300
Van91I	CCANNNNNTGG	1 cut(s)	814
VneI	GTGCAC	2 cut(s)	122, 1083
VpaK11BI	GGWCC	2 cut(s)	589, 870
XagI	CCTNNNNNAGG	1 cut(s)	107
XapI	RAATTY	2 cut(s)	317, 1267
XceI	RCATGY	3 cut(s)	90, 734, 1442
XmiI	GTMKAC	2 cut(s)	1478, 1701
XspI	CTAG	8 cut(s)	617, 648, 978, 1088, 1284, 1508, 1931, 2033
ZrmI	AGTACT	1 cut(s)	1306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.