Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0024402

Physical Location & Seq

Genomic Coordinates Forward (+)

8296825 .. 8298337

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1098500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTTTACGTATCCGTTACTCTGTTCGAGATTCCAAAACGCTCAATAAAAATCCTTGTGAGAAACCCCAGTTCACCTGTCTTCAGTCGAAGCCGGCATTGGCTGCTGGGACCTCCGCACGGGCGCCGAGCAGCTCCGCTACAAGCTCTGCGCCTCTCCGCCTCGCGGTCTCATCTGCGTAAACGAACGGTTCCTCGCCTCCTCTCAGCTTCTCGAGTCTTCTTCCTCCTCTTGCTCTGTCCTGGCCCTGGTCCAAGCTGCAAGTTCATGTCTAGAGCTTTCCAAAAGAACCGATCAATCCGCTCACTGCGAACAGCGAAGGCACATAGATTGTTGGCGGAGGCTCGCCGGGGAATATCTACTTGTGGGAGCAAAGCTGTTACTTGCATAGCATATGGTATTTCTGGAAATCATTTGATTTCTGGATCAGAAGATGGCATGGTTCGAATTTGGGATGCTATAACTCATAACATTGTTCGCATGTTCAAACATGCAAATGGCTATCTCAATGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0048509 GO:0048519 GO:0050789 GO:0050793 GO:0051093 GO:0065007 GO:0080008 GO:1902183 GO:1902184 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

173

Amino Acids

19.23

Weight (kDa)

11.8

Isoelectric Point (pI)

63.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR3_1st	PF25173	123 - 164	3.4e-06	WDR3 first beta-propeller domain
WD40	PF00400	124 - 152	1.7e-07	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	124 - 163	5.6e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024402)

Species	Orthologous Gene IDs
malus_domestica	MD08G1098500.v1.1 MD08G1099800.v1.1
pyrus_communis	pycom08g08110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccBSI	CCGCTC	1 cut(s)	303
AccII	CGCG	1 cut(s)	166
AciI	CCGC	6 cut(s)	116, 137, 159, 166, 301, 338
AclWI	GGATC	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	124
AfiI	CCNNNNNNNGG	3 cut(s)	119, 165, 248
AgsI	TTSAA	1 cut(s)	487
AjnI	CCWGG	2 cut(s)	241, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	6 cut(s)	134, 146, 209, 258, 278, 377
AluI	AGCT	6 cut(s)	134, 146, 209, 258, 278, 377
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	3 cut(s)	103, 131, 258
ApoI	RAATTY	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	126, 153
AspS9I	GGNCC	3 cut(s)	110, 245, 251
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	66
AsuII	TTCGAA	1 cut(s)	445
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	110, 251
BanI	GGYRCC	1 cut(s)	123
BbsI	GAAGAC	2 cut(s)	73, 211
BbvI	GCAGC	3 cut(s)	90, 143, 245
BccI	CCATC	1 cut(s)	428
BciT130I	CCWGG	2 cut(s)	243, 249
BciVI	GTATCC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	22
BisI	GCNGC	3 cut(s)	104, 132, 259
BlsI	GCNGC	3 cut(s)	105, 133, 260
Bme1390I	CCNGG	3 cut(s)	243, 249, 350
Bme18I	GGWCC	2 cut(s)	110, 251
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	110, 245, 251
BmiI	GGNNCC	3 cut(s)	111, 125, 192
BmrFI	CCNGG	3 cut(s)	243, 249, 350
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	445
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	2 cut(s)	73, 211
Bpu14I	TTCGAA	1 cut(s)	445
BpuMI	CCSGG	1 cut(s)	350
BsaAI	YACGTR	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	247, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 165, 248
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	243, 249
BseDI	CCNNGG	2 cut(s)	247, 349
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	119, 165, 248
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	191, 218
BseXI	GCAGC	3 cut(s)	90, 143, 245
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	94, 349
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	119, 165, 248
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	246
Bso31I	GGTCTC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	293, 425
BspACI	CCGC	6 cut(s)	116, 137, 159, 166, 301, 338
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	3 cut(s)	111, 125, 192
BspPI	GGATC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	445
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	247, 349
BssMI	GATC	2 cut(s)	293, 425
BssNI	GRCGYC	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	243, 249
Bst4CI	ACNGT	1 cut(s)	190
BstACI	GRCGYC	1 cut(s)	124
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstBAI	YACGTR	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	95, 346
BstDEI	CTNAG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	166
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 153
BstKTI	GATC	2 cut(s)	296, 428
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	293, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	2 cut(s)	243, 249
BstNSI	RCATGY	2 cut(s)	484, 494
BstSCI	CCNGG	3 cut(s)	241, 247, 348
BstSNI	TACGTA	1 cut(s)	10
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	90, 143, 245
BstV2I	GAAGAC	2 cut(s)	73, 211
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	95, 346
CfoI	GCGC	2 cut(s)	126, 153
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	3 cut(s)	110, 245, 251
CviAII	CATG	4 cut(s)	268, 439, 481, 491
DdeI	CTNAG	1 cut(s)	205
DinI	GGCGCC	1 cut(s)	125
DpnI	GATC	2 cut(s)	295, 427
DpnII	GATC	2 cut(s)	293, 425
EciI	GGCGGA	2 cut(s)	148, 353
Eco105I	TACGTA	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	110, 251
Eco57I	CTGAAG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	241, 247
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
FaeI	CATG	4 cut(s)	271, 442, 484, 494
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	267, 438, 480, 490
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	104, 132, 259
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	104, 132, 259
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	2 cut(s)	125, 152
GluI	GCNGC	3 cut(s)	104, 132, 259
GsaI	CCCAGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	2 cut(s)	94, 349
HhaI	GCGC	2 cut(s)	126, 153
Hin1I	GRCGYC	1 cut(s)	124
Hin1II	CATG	4 cut(s)	271, 442, 484, 494
Hin6I	GCGC	2 cut(s)	124, 151
HinP1I	GCGC	2 cut(s)	124, 151
HinfI	GANTC	2 cut(s)	31, 216
HpaII	CCGG	2 cut(s)	94, 349
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	74, 182
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	5 cut(s)	28, 213, 273, 405, 423
Hpy8I	GTNNAC	2 cut(s)	74, 182
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	261, 387, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	271, 442, 484, 494
HspAI	GCGC	2 cut(s)	124, 151
KasI	GGCGCC	1 cut(s)	123
KroI	GCCGGC	1 cut(s)	93
KroNI	GCCGGC	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	293, 425
LmnI	GCTCC	2 cut(s)	139, 369
Lsp1109I	GCAGC	3 cut(s)	90, 143, 245
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	16, 379
MalI	GATC	2 cut(s)	295, 427
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	2 cut(s)	293, 425
MboII	GAAGA	4 cut(s)	73, 211, 214, 443
MluCI	AATT	1 cut(s)	447
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	9 cut(s)	123, 164, 172, 204, 209, 212, 236, 239, 334
MroNI	GCCGGC	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	495
MspI	CCGG	2 cut(s)	94, 349
MspR9I	CCNGG	3 cut(s)	243, 249, 350
MvaI	CCWGG	2 cut(s)	243, 249
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	1 cut(s)	103
NaeI	GCCGGC	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	2 cut(s)	293, 425
NgoMIV	GCCGGC	1 cut(s)	93
NlaIII	CATG	4 cut(s)	271, 442, 484, 494
NlaIV	GGNNCC	3 cut(s)	111, 125, 192
NmeAIII	GCCGAG	1 cut(s)	152
NspI	RCATGY	2 cut(s)	484, 494
NspV	TTCGAA	1 cut(s)	445
PaeR7I	CTCGAG	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	105, 133, 260
PleI	GAGTC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	241, 247
PspFI	CCCAGC	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	241, 247
PspN4I	GGNNCC	3 cut(s)	111, 125, 192
PspPI	GGNCC	3 cut(s)	110, 245, 251
PspPPI	RGGWCCY	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	495
SatI	GCNGC	3 cut(s)	104, 132, 259
Sau3AI	GATC	2 cut(s)	293, 425
Sau96I	GGNCC	3 cut(s)	110, 245, 251
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	3 cut(s)	243, 249, 350
SetI	ASST	9 cut(s)	12, 79, 115, 136, 148, 211, 260, 280, 379
SfaNI	GCATC	1 cut(s)	445
SfoI	GGCGCC	1 cut(s)	125
Sfr274I	CTCGAG	1 cut(s)	213
SfuI	TTCGAA	1 cut(s)	445
SinI	GGWCC	2 cut(s)	110, 251
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SnaBI	TACGTA	1 cut(s)	10
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	6 cut(s)	116, 137, 159, 166, 301, 338
SspDI	GGCGCC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	3 cut(s)	241, 247, 348
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	4 cut(s)	27, 88, 214, 445
TasI	AATT	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	3 cut(s)	103, 131, 258
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	2 cut(s)	110, 251
XapI	RAATTY	1 cut(s)	447
XbaI	TCTAGA	1 cut(s)	272
XceI	RCATGY	2 cut(s)	484, 494
XhoI	CTCGAG	1 cut(s)	213
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.