Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0024402

Physical Location & Seq

Genomic Coordinates Forward (+)

6546403 .. 6547466

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGCACACTCTTTGTGTAACGGATGTTGGCGCAGGATATGGTGGATGCAAAGCCATTATTGTGTCAGCATTTCAGGATCGCACGTGTAAGGTTTGGAGAGTAGGAAGTGGGAGAGTATTGAGAAATATTGTTTTCCCTACCATAATTGAGTCATTGCACTGGATCCTGGTGAAAATGTCTTCTTTGCTAGTGGTAGAGATGGCAAGATATGCGTTGGTGCACTATGCTGAGAGTCCGCTTAACAGCAACAATGGATTGCATATCATCAATTGTTTCTCGAATCACAGCAAATTTTTTACTTGCTTAGCATATGGCATTTCTGGAAATTATTTGATTTCTAGATTAGAAGATGGCGTGGTTCGAGTTTGGGATGCTAGAACTCATAATATTCTTCGCGTGTTCAAAAATGCAAAAGGTTATCTCAATTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:0048509 GO:0048519 GO:0050789 GO:0050793 GO:0051093 GO:0065007 GO:0080008 GO:1902183 GO:1902184 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

146

Amino Acids

16.26

Weight (kDa)

9.25

Isoelectric Point (pI)

43.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024402)

Species	Orthologous Gene IDs
malus_domestica	MD08G1098500.v1.1 MD08G1099800.v1.1
pyrus_communis	pycom08g08110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	399
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	3 cut(s)	87, 160, 173
AcsI	RAATTY	1 cut(s)	293
AcvI	CACGTG	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	168
Alw21I	GWGCWC	2 cut(s)	9, 225
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	87, 160, 173
ApaLI	GTGCAC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	165
BbrPI	CACGTG	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	9, 225
BccI	CCATC	2 cut(s)	196, 347
BciT130I	CCWGG	1 cut(s)	170
BfaI	CTAG	3 cut(s)	191, 342, 378
BlpI	GCTNAGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	170
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	38, 364
BpiI	GAAGAC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	31, 53, 379
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	9, 225
Bsp1286I	GDGCHC	2 cut(s)	9, 225
Bsp143I	GATC	2 cut(s)	79, 165
Bsp1720I	GCTNAGC	1 cut(s)	307
BspACI	CCGC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	3 cut(s)	87, 160, 173
BsrDI	GCAATG	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	79, 165
Bst2UI	CCWGG	1 cut(s)	170
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	231, 307
BstF5I	GGATG	3 cut(s)	31, 53, 379
BstFNI	CGCG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	82, 168
BstMBI	GATC	2 cut(s)	79, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	225
BstUI	CGCG	1 cut(s)	399
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	31, 53, 379
BtsIMutI	CAGTG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	35
CviJI	RGCY	1 cut(s)	56
CviKI_1	RGCY	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	231, 307
DpnI	GATC	2 cut(s)	81, 167
DpnII	GATC	2 cut(s)	79, 165
Eco72I	CACGTG	1 cut(s)	87
EcoRII	CCWGG	1 cut(s)	168
FaiI	YATR	8 cut(s)	42, 146, 213, 228, 264, 313, 315, 387
FauNDI	CATATG	1 cut(s)	313
FokI	GGATG	3 cut(s)	38, 60, 386
FspBI	CTAG	3 cut(s)	191, 342, 378
GlaI	GCGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	152, 235, 283
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	4 cut(s)	77, 280, 324, 342
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	5 cut(s)	51, 160, 223, 262, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	2 cut(s)	231, 307
HpySE526I	ACGT	1 cut(s)	86
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	79, 165
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	21, 62, 148, 155, 182, 309
LweI	GCATC	2 cut(s)	38, 364
MaeI	CTAG	3 cut(s)	191, 342, 378
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	81, 167
MboI	GATC	2 cut(s)	79, 165
MboII	GAAGA	3 cut(s)	174, 362, 386
MfeI	CAATTG	1 cut(s)	271
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	2 cut(s)	9, 225
MluCI	AATT	5 cut(s)	147, 271, 293, 328, 427
MlyI	GAGTC	2 cut(s)	161, 244
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	170
MunI	CAATTG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	79, 165
NlaIV	GGNNCC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	283
PleI	GAGTC	2 cut(s)	160, 243
PmaCI	CACGTG	1 cut(s)	87
PmlI	CACGTG	1 cut(s)	87
PpsI	GAGTC	2 cut(s)	160, 243
Ppu21I	YACGTR	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	168
PspCI	CACGTG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	79, 165
SchI	GAGTC	2 cut(s)	161, 244
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	9, 225
SetI	ASST	3 cut(s)	89, 96, 421
SfaNI	GCATC	2 cut(s)	38, 364
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	5 cut(s)	147, 271, 293, 328, 427
SsiI	CCGC	1 cut(s)	239
SspI	AATATT	2 cut(s)	130, 391
SspMI	CTAG	3 cut(s)	191, 342, 378
StyD4I	CCNGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	281, 364
TasI	AATT	5 cut(s)	147, 271, 293, 328, 427
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	167
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	293
XbaI	TCTAGA	1 cut(s)	341
XspI	CTAG	3 cut(s)	191, 342, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.