Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0024404

Physical Location & Seq

Genomic Coordinates Reverse (-)

11074639 .. 11075364

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1120700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCAGATTCACAATATGTGCATCAAATCTGGTTTTGAATGGGTGACAGTGGTGAGCAATTATATCCTTGACATGTATGCGAAATATGGAAAATTTCGCGAAGCAGCACGAATGCTTGATGTGATACCAGTTAAGAATCTTATCAGTTGGAACGCGATGATAGCCGGATTCACGCTTGAAGGAAATGGGGAGAGAGCTTTGGTTTTGTTTAGGAAAATGCAAAGGCTCGGGGAAATGCCCGATGAGTATACGATTACAAGCACGCTCAAGGCTTGTAGTGGCCTTGGAGCAATTCGGCAAGGAAGCCAAATACATTCCTTCTTAATCACAAAAGGATTCTTGTGTTCAGTTCAGACTACTGTTGCCGGTGCTTTTGTTGATCTGTATGTCAAATGCGGGCACTTAACTGAAGCTCAAAGAGTATTCTATCAAATCGAACAAAAAAATTTAGTGTCATGGAGTTCCCTGATTCTTGGTTATGCTCAAGAACGCAATCTACTACAAGCTACGAACTTGTTTAGGCAGCTCAGGGTTAGTGTCGACCATAAAGTAGATGGGTTTGTTCTATCAAGCCTTATGGGTGTGTTTGCTGATTTTGCTCTTATAGATCAAGGTAAGCAAATGCATGCTTTCACGATTAAAATCCCATCTGGTTTAGACATATTAGTGACTAATTCAATTCTGGATATGTATCTCAAGTGTGGATTGCCAGACGAGGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

242

Amino Acids

27.08

Weight (kDa)

8.23

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	46 - 92	4.6e-10	PPR repeat family
PPR	PF01535	48 - 77	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024404)

Species	Orthologous Gene IDs
malus_domestica	MD08G1120700.v1.1
rosa_samantha	Rh6BG447800 Rh6CG467500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	248, 540
AccII	CGCG	2 cut(s)	99, 155
AciI	CCGC	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	92, 445
AcuI	CTGAAG	1 cut(s)	429
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	38, 179, 678
AluBI	AGCT	4 cut(s)	197, 413, 506, 526
AluI	AGCT	4 cut(s)	197, 413, 506, 526
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	104, 523
ApoI	RAATTY	2 cut(s)	92, 445
AsuHPI	GGTGA	2 cut(s)	55, 64
AvaI	CYCGRG	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	116, 535
BccI	CCATC	2 cut(s)	548, 655
BisI	GCNGC	2 cut(s)	105, 524
BlsI	GCNGC	2 cut(s)	106, 525
BmeT110I	CYCGRG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	527
BpuEI	CTTGAG	3 cut(s)	251, 468, 680
BsaBI	GATNNNNATC	2 cut(s)	641, 690
BsaJI	CCNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	128
Bse8I	GATNNNNATC	2 cut(s)	641, 690
BseDI	CCNNGG	1 cut(s)	283
BseJI	GATNNNNATC	2 cut(s)	641, 690
BseMII	CTCAG	1 cut(s)	541
BseNI	ACTGG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	116, 535
Bsh1236I	CGCG	2 cut(s)	99, 155
BshFI	GGCC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	165, 366
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	379, 607
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	540
BspFNI	CGCG	2 cut(s)	99, 155
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	379, 607
BssNAI	GTATAC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	283
Bst1107I	GTATAC	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	49, 361
BstC8I	GCNNGC	3 cut(s)	263, 398, 627
BstDEI	CTNAG	1 cut(s)	527
BstFNI	CGCG	2 cut(s)	99, 155
BstKTI	GATC	2 cut(s)	382, 610
BstMBI	GATC	2 cut(s)	379, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 596
BstNSI	RCATGY	2 cut(s)	76, 629
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	2 cut(s)	99, 155
BstV1I	GCAGC	2 cut(s)	116, 535
BstZ17I	GTATAC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	54
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	263, 398, 627
Cfr10I	RCCGGY	1 cut(s)	365
CviAII	CATG	3 cut(s)	73, 456, 626
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	2 cut(s)	381, 609
DpnII	GATC	2 cut(s)	379, 607
Eco130I	CCWWGG	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	3 cut(s)	76, 459, 629
FatI	CATG	3 cut(s)	72, 455, 625
FauI	CCCGC	1 cut(s)	389
FblI	GTMKAC	2 cut(s)	248, 540
Fnu4HI	GCNGC	2 cut(s)	105, 524
Fsp4HI	GCNGC	2 cut(s)	105, 524
GluI	GCNGC	2 cut(s)	105, 524
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	165, 366
Hin1II	CATG	3 cut(s)	76, 459, 629
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	5 cut(s)	7, 136, 168, 336, 469
HpaII	CCGG	2 cut(s)	165, 366
HphI	GGTGA	2 cut(s)	55, 64
Hpy166II	GTNNAC	2 cut(s)	249, 541
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	4 cut(s)	98, 485, 634, 683
Hpy8I	GTNNAC	2 cut(s)	249, 541
HpyAV	CCTTC	2 cut(s)	173, 328
HpyCH4III	ACNGT	2 cut(s)	49, 361
HpyCH4V	TGCA	4 cut(s)	4, 21, 220, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 596
HpyF3I	CTNAG	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	76, 459, 629
Kzo9I	GATC	2 cut(s)	379, 607
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	8 cut(s)	15, 141, 178, 379, 479, 514, 636, 668
Lsp1109I	GCAGC	2 cut(s)	116, 535
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	43, 667
MalI	GATC	2 cut(s)	381, 609
MboI	GATC	2 cut(s)	379, 607
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	6 cut(s)	58, 92, 291, 445, 673, 678
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	1 cut(s)	709
Mph1103I	ATGCAT	1 cut(s)	627
MseI	TTAA	4 cut(s)	132, 323, 404, 639
MslI	CAYNNNNRTG	1 cut(s)	665
MspI	CCGG	2 cut(s)	165, 366
Mva1269I	GAATGC	1 cut(s)	117
MvnI	CGCG	2 cut(s)	99, 155
MwoI	GCNNNNNNNGC	2 cut(s)	161, 596
NdeII	GATC	2 cut(s)	379, 607
NlaIII	CATG	3 cut(s)	76, 459, 629
NmuCI	GTSAC	2 cut(s)	43, 667
NruI	TCGCGA	1 cut(s)	99
NsiI	ATGCAT	1 cut(s)	627
NspI	RCATGY	2 cut(s)	76, 629
PaeI	GCATGC	1 cut(s)	629
PciI	ACATGT	1 cut(s)	72
PctI	GAATGC	1 cut(s)	117
PfeI	GAWTC	5 cut(s)	7, 136, 168, 336, 469
PkrI	GCNGC	2 cut(s)	106, 525
PscI	ACATGT	1 cut(s)	72
PsrI	GAACNNNNNNTAC	2 cut(s)	480, 512
RruI	TCGCGA	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	665
SalI	GTCGAC	1 cut(s)	539
SaqAI	TTAA	4 cut(s)	132, 323, 404, 639
SatI	GCNGC	2 cut(s)	105, 524
Sau3AI	GATC	2 cut(s)	379, 607
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	5 cut(s)	199, 415, 508, 528, 616
SfaNI	GCATC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	3 cut(s)	266, 483, 695
SmoI	CTYRAG	3 cut(s)	266, 483, 695
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	6 cut(s)	58, 92, 291, 445, 673, 678
SsiI	CCGC	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	2 cut(s)	49, 361
TaqI	TCGA	2 cut(s)	435, 540
TasI	AATT	6 cut(s)	58, 92, 291, 445, 673, 678
TfiI	GAWTC	5 cut(s)	7, 136, 168, 336, 469
Tru1I	TTAA	4 cut(s)	132, 323, 404, 639
Tru9I	TTAA	4 cut(s)	132, 323, 404, 639
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	2 cut(s)	43, 667
TseI	GCWGC	2 cut(s)	104, 523
Tsp45I	GTSAC	2 cut(s)	43, 667
TspRI	CASTG	1 cut(s)	54
XapI	RAATTY	2 cut(s)	92, 445
XceI	RCATGY	2 cut(s)	76, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmiI	GTMKAC	2 cut(s)	248, 540
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.