Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0024404

Physical Location & Seq

Genomic Coordinates Forward (+)

63931600 .. 63933667

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG467500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATGAGAGGCAGAGATTGGCGAATCTCCTGCGGAACTGTTCGAAGAATTTGCTACTTCGTGAGGGATTGCAAGCTCATGGGTCAGTGATGAGAATGGGACTTGGGTTTGATTTGATGCTGAACAATGATCTTATAGATATGTATAGAGTTAAGCCGAATGAGTACACTCTTTCGACTAATCTCAAGGCGTCTGGGATCTTGGGGATTGCTGATAATGGAATGCAGATACACAGTATGTGCGCTAAGTCTGGTTATGAATGGGCTGCAGTGGTGAGCAATGCTATCCTTGACATGTATGCAAAATGTGGAAGAGTTAGTGAAGCGTCCAGGATGTTCAGTGTTATGCCGGCTAAGAATGTTATTACTTGGAACACAATGATAGCTGGATACACGGTTGAAGGAAATGGGGAGAAAGCGTTGGTATTGTTTAGGAAAATGCAAGAGCTGGGAGAAGTTCCGGATGAGTATACGATTACAAGCACACTCAAGGCTTGTAGTGGCCTTGGAGCAATTCGGCAAGGAAGCCAAATACATTCCTCCTTGATCACAAGGGGGTTTCTGTGTTCAGTTCGGACGATTATTGCAGGTGCTCTCGTTGATATGTATGTGAAGTGCAGGCACTTAACTGAAGCTCAGAGAGTGTTTGATCAAGTTGAACAGAAGAATCTAATATCTTGGAGTGCCCTGATTCTTGGTTATGCCCAAGAATGCAATTTAACACAGGCCATGGAGTTGTTTAGGCAGCTCAGAGCTAGTGTATGTCATCAAGTAGATGGGTATGTTCTGTCGAGCCTTATGGGTGTGTTTGCTGATTTTGCTCTAGTAGAACAAGGTTTCACAAGTTTGAGGACGGCGTGTGTTCTTGTGGAGATTATTGGTGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

296

Amino Acids

32.74

Weight (kDa)

7.54

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	119 - 166	7e-13	PPR repeat family
PPR	PF01535	122 - 151	2.5e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024404)

Species	Orthologous Gene IDs
malus_domestica	MD08G1120700.v1.1
rosa_samantha	Rh6BG447800 Rh6CG467500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	167
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	401, 659
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	6 cut(s)	77, 386, 448, 635, 748, 755
AluI	AGCT	6 cut(s)	77, 386, 448, 635, 748, 755
Alw21I	GWGCWC	1 cut(s)	595
AlwI	GGATC	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	2 cut(s)	502, 726
ApeKI	GCWGC	2 cut(s)	266, 745
ApoI	RAATTY	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	2 cut(s)	253, 757
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	1 cut(s)	870
BcgI	CGANNNNNNTGC	4 cut(s)	13, 34, 47, 68
BciT130I	CCWGG	1 cut(s)	331
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	2 cut(s)	546, 649
BfaI	CTAG	3 cut(s)	756, 824, 889
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	578
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	2 cut(s)	267, 746
BlsI	GCNGC	2 cut(s)	268, 747
Bme1390I	CCNGG	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	170, 473
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	505, 729
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bse118I	RCCGGY	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	286
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	505, 729
BseGI	GGATG	2 cut(s)	339, 469
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	650, 763
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	2 cut(s)	253, 757
BseYI	CCCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	637
BshFI	GGCC	2 cut(s)	504, 728
BsiHKAI	GWGCWC	1 cut(s)	595
BsiSI	CCGG	2 cut(s)	350, 461
BslFI	GGGAC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	2 cut(s)	228, 716
BsnI	GGCC	2 cut(s)	504, 728
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	595, 688
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	4 cut(s)	130, 198, 546, 649
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	504, 728
BspCNI	CTCAG	2 cut(s)	649, 762
BspEI	TCCGGA	1 cut(s)	460
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	1 cut(s)	206
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	349
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	505, 729
BssMI	GATC	4 cut(s)	130, 198, 546, 649
BssNAI	GTATAC	1 cut(s)	471
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	505, 729
Bst1107I	GTATAC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	41, 236, 397
Bst6I	CTCTTC	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	75, 351, 620
BstDEI	CTNAG	4 cut(s)	246, 354, 636, 749
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	2 cut(s)	339, 469
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	4 cut(s)	133, 201, 549, 652
BstMBI	GATC	4 cut(s)	130, 198, 546, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	818
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	253, 757
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BstZ17I	GTATAC	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	504, 728
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	2 cut(s)	339, 469
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	3 cut(s)	93, 276, 346
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	3 cut(s)	75, 351, 620
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	349
CseI	GACGC	2 cut(s)	180, 315
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	80, 295, 730
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	246, 354, 636, 749
DpnI	GATC	4 cut(s)	132, 200, 548, 651
DpnII	GATC	4 cut(s)	130, 198, 546, 649
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	505, 729
Eco32I	GATATC	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	505, 729
ErhI	CCWWGG	2 cut(s)	505, 729
FaeI	CATG	3 cut(s)	83, 298, 733
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	79, 294, 729
FbaI	TGATCA	2 cut(s)	546, 649
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	267, 746
FokI	GGATG	2 cut(s)	346, 476
Fsp4HI	GCNGC	2 cut(s)	267, 746
FspBI	CTAG	3 cut(s)	756, 824, 889
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	267, 746
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	504, 728
HapII	CCGG	2 cut(s)	350, 461
HgaI	GACGC	2 cut(s)	180, 315
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	83, 298, 733
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	3 cut(s)	25, 667, 691
HpaII	CCGG	2 cut(s)	350, 461
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	168, 471
Hpy188I	TCNGA	3 cut(s)	576, 639, 752
Hpy188III	TCNNGA	2 cut(s)	62, 461
Hpy8I	GTNNAC	2 cut(s)	168, 471
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	3 cut(s)	41, 236, 397
HpyCH4V	TGCA	8 cut(s)	73, 226, 269, 302, 442, 587, 618, 714
HpyF10VI	GCNNNNNNNGC	1 cut(s)	818
HpyF3I	CTNAG	4 cut(s)	246, 354, 636, 749
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	3 cut(s)	83, 298, 733
HspAI	GCGC	1 cut(s)	243
Kpn2I	TCCGGA	1 cut(s)	460
KroI	GCCGGC	1 cut(s)	349
KroNI	GCCGGC	1 cut(s)	351
Ksp22I	TGATCA	2 cut(s)	546, 649
Kzo9I	GATC	4 cut(s)	130, 198, 546, 649
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	2 cut(s)	253, 757
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	3 cut(s)	756, 824, 889
MalI	GATC	4 cut(s)	132, 200, 548, 651
MboI	GATC	4 cut(s)	130, 198, 546, 649
MboII	GAAGA	3 cut(s)	58, 324, 676
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	595, 688
MluCI	AATT	3 cut(s)	49, 513, 715
MnlI	CCTC	4 cut(s)	3, 58, 550, 843
MroI	TCCGGA	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	349
MseI	TTAA	3 cut(s)	153, 626, 719
MspI	CCGG	2 cut(s)	350, 461
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	2 cut(s)	228, 716
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	1 cut(s)	818
NaeI	GCCGGC	1 cut(s)	351
NcoI	CCATGG	1 cut(s)	729
NdeII	GATC	4 cut(s)	130, 198, 546, 649
NgoMIV	GCCGGC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	83, 298, 733
NspI	RCATGY	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	44
PaqCI	CACCTGC	1 cut(s)	578
PciI	ACATGT	1 cut(s)	294
PctI	GAATGC	2 cut(s)	228, 716
PdiI	GCCGGC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	25, 667, 691
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	268, 747
PscI	ACATGT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	153, 626, 719
SatI	GCNGC	2 cut(s)	267, 746
Sau3AI	GATC	4 cut(s)	130, 198, 546, 649
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	2 cut(s)	595, 688
SetI	ASST	8 cut(s)	79, 388, 450, 592, 637, 750, 757, 838
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	185, 488
SmoI	CTYRAG	2 cut(s)	185, 488
Sse9I	AATT	3 cut(s)	49, 513, 715
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	3 cut(s)	756, 824, 889
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	2 cut(s)	505, 729
TaaI	ACNGT	3 cut(s)	41, 236, 397
TaqI	TCGA	3 cut(s)	44, 176, 791
TasI	AATT	3 cut(s)	49, 513, 715
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	3 cut(s)	25, 667, 691
Tru1I	TTAA	3 cut(s)	153, 626, 719
Tru9I	TTAA	3 cut(s)	153, 626, 719
TscAI	CASTG	3 cut(s)	93, 276, 346
TseI	GCWGC	2 cut(s)	266, 745
TspDTI	ATGAA	2 cut(s)	17, 273
TspRI	CASTG	3 cut(s)	93, 276, 346
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	3 cut(s)	756, 824, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.