Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0024404

Physical Location & Seq

Genomic Coordinates Reverse (-)

66314481 .. 66315474

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG447800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGATTTTCGGGAGTTAAGCCGAATGAGTACACTCTTTCGACTAATCTCAAGGCGTCTGGGATCTTGGGGATTGCTGATAATGGAATGCAGATACACAGTATGTGCGCTAAGTCTGGTTATGAATGGGCTGCAGTGGTGAGCAATGCTATCCTTGACATGTATGCGAAATGTGGAAGAGTTAGTGAAGCGTCCAGGATGTTCAGTGTTATGCCGGCTAAGAATGTTATTACTTGGAACACAATGATAGCTGGATACACGGTTGAAGGAAATGGGGAGAAAGCGTTGGTATTGTTTAGGAAAATGCAAGAGCTGGGAGAAGTTCCGGATGAGTATACGATTACAAGCACACTCAAGGCTTGTAGTGGCCTTGGAGCAATTCGGCAAGGAAGCCAAATACATTCCTCCTTGATCACAAGGGGGTTTCTGTGTTCAGTTCGGACGATTATTGCAGGTGCTCTCGTTGATATGTATGTGAAGTGCAGGCACTTAACTGAAGCTCAGAGAGTGTTTGATCAAGTTGAACAGAAGAATCTAATATCTTGGAGTGCCCTGATTCTTGGTTATGCCCAAGAATGCAATTTAACACAGGCCATGGAGTTGTTTAGGCAGCTCAGAGCTAGTGTATGTCATCAAGTAGATGGGTTTGTTCTGTCGAGCCTTATGGGTGTGTTTGCTGATTTTGCTCTAGTAGAACAAGGTAGGCAAATGCATGCTTTCACCACTAAAATCCCATCTGGTTTAGACATATCGGTGTTTAACTCGATTCTGGATATGTATCTCAAGTGTGGTTTGACAGATGAGGCAGAAAGACTTTTCGATGAAATTCAGTTGAGAAATTGCTCTCAGCCTGCAGCCATTCTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167 DYW_deaminase PPR PPR_2 Pkinase

Protein Analysis

289

Amino Acids

31.77

Weight (kDa)

5.99

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	74 - 121	6.8e-13	PPR repeat family
PPR	PF01535	77 - 106	2.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024404)

Species	Orthologous Gene IDs
malus_domestica	MD08G1120700.v1.1
rosa_samantha	Rh6BG447800 Rh6CG467500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	335
AccIII	TCCGGA	1 cut(s)	325
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	825
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	266, 524
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	5 cut(s)	251, 313, 500, 613, 620
AluI	AGCT	5 cut(s)	251, 313, 500, 613, 620
Alw21I	GWGCWC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	71
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	2 cut(s)	367, 591
ApeKI	GCWGC	3 cut(s)	131, 610, 854
ApoI	RAATTY	1 cut(s)	825
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	151, 712
BaeGI	GKGCMC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	3 cut(s)	118, 622, 866
BccI	CCATC	2 cut(s)	635, 742
BciT130I	CCWGG	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	248
BclI	TGATCA	2 cut(s)	411, 514
BfaI	CTAG	2 cut(s)	621, 689
BfmI	CTRYAG	2 cut(s)	132, 852
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	132, 611, 855
BlsI	GCNGC	3 cut(s)	133, 612, 856
Bme1390I	CCNGG	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	196
BpuEI	CTTGAG	3 cut(s)	35, 338, 767
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	370, 594
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	777
BseAI	TCCGGA	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	370, 594
BseGI	GGATG	2 cut(s)	204, 334
BseJI	GATNNNNATC	1 cut(s)	777
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	3 cut(s)	515, 628, 860
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	3 cut(s)	118, 622, 866
BseYI	CCCAGC	1 cut(s)	313
BsgI	GTGCAG	1 cut(s)	502
BshFI	GGCC	2 cut(s)	369, 593
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	2 cut(s)	215, 326
BsmI	GAATGC	2 cut(s)	93, 581
BsnI	GGCC	2 cut(s)	369, 593
Bsp1286I	GDGCHC	2 cut(s)	460, 553
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	63, 411, 514
Bsp19I	CCATGG	1 cut(s)	594
BspANI	GGCC	2 cut(s)	369, 593
BspCNI	CTCAG	3 cut(s)	514, 627, 859
BspEI	TCCGGA	1 cut(s)	325
BspMAI	CTGCAG	2 cut(s)	136, 856
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	370, 594
BssMI	GATC	3 cut(s)	63, 411, 514
BssNAI	GTATAC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	2 cut(s)	370, 594
Bst1107I	GTATAC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	101, 262
Bst6I	CTCTTC	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	56
BstC8I	GCNNGC	4 cut(s)	216, 485, 714, 852
BstDEI	CTNAG	5 cut(s)	111, 219, 501, 614, 846
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	204, 334
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	66, 414, 517
BstMBI	GATC	3 cut(s)	63, 411, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	2 cut(s)	163, 716
BstSCI	CCNGG	1 cut(s)	194
BstSFI	CTRYAG	2 cut(s)	132, 852
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	3 cut(s)	118, 622, 866
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BstZ17I	GTATAC	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	369, 593
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	204, 334
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	141, 211
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	4 cut(s)	216, 485, 714, 852
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	214
CseI	GACGC	2 cut(s)	45, 180
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	3 cut(s)	160, 595, 713
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	5 cut(s)	111, 219, 501, 614, 846
DpnI	GATC	3 cut(s)	65, 413, 516
DpnII	GATC	3 cut(s)	63, 411, 514
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	370, 594
Eco57I	CTGAAG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	194
EcoT14I	CCWWGG	2 cut(s)	370, 594
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	2 cut(s)	370, 594
FaeI	CATG	3 cut(s)	163, 598, 716
FatI	CATG	3 cut(s)	159, 594, 712
FbaI	TGATCA	2 cut(s)	411, 514
FblI	GTMKAC	1 cut(s)	335
Fnu4HI	GCNGC	3 cut(s)	132, 611, 855
FokI	GGATG	2 cut(s)	211, 341
Fsp4HI	GCNGC	3 cut(s)	132, 611, 855
FspBI	CTAG	2 cut(s)	621, 689
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	132, 611, 855
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	369, 593
HapII	CCGG	2 cut(s)	215, 326
HgaI	GACGC	2 cut(s)	45, 180
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	163, 598, 716
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	532, 556, 766
HpaII	CCGG	2 cut(s)	215, 326
HphI	GGTGA	2 cut(s)	151, 712
Hpy166II	GTNNAC	2 cut(s)	33, 336
Hpy188I	TCNGA	3 cut(s)	441, 504, 617
Hpy188III	TCNNGA	4 cut(s)	12, 326, 770, 863
Hpy8I	GTNNAC	2 cut(s)	33, 336
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	101, 262
HpyCH4V	TGCA	8 cut(s)	91, 134, 307, 452, 483, 579, 712, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	5 cut(s)	111, 219, 501, 614, 846
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	163, 598, 716
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	214
KroNI	GCCGGC	1 cut(s)	216
Ksp22I	TGATCA	2 cut(s)	411, 514
Kzo9I	GATC	3 cut(s)	63, 411, 514
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	3 cut(s)	118, 622, 866
MaeI	CTAG	2 cut(s)	621, 689
MalI	GATC	3 cut(s)	65, 413, 516
MboI	GATC	3 cut(s)	63, 411, 514
MboII	GAAGA	2 cut(s)	189, 541
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	460, 553
MluCI	AATT	4 cut(s)	378, 580, 825, 838
MnlI	CCTC	2 cut(s)	415, 796
Mph1103I	ATGCAT	1 cut(s)	714
MroI	TCCGGA	1 cut(s)	325
MroNI	GCCGGC	1 cut(s)	214
MseI	TTAA	4 cut(s)	18, 491, 584, 759
MslI	CAYNNNNRTG	1 cut(s)	752
MspI	CCGG	2 cut(s)	215, 326
MspR9I	CCNGG	1 cut(s)	196
Mva1269I	GAATGC	2 cut(s)	93, 581
MvaI	CCWGG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	683
NaeI	GCCGGC	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	3 cut(s)	63, 411, 514
NgoMIV	GCCGGC	1 cut(s)	214
NlaIII	CATG	3 cut(s)	163, 598, 716
NsiI	ATGCAT	1 cut(s)	714
NspI	RCATGY	2 cut(s)	163, 716
PaeI	GCATGC	1 cut(s)	716
PaqCI	CACCTGC	1 cut(s)	443
PciI	ACATGT	1 cut(s)	159
PctI	GAATGC	2 cut(s)	93, 581
PdiI	GCCGGC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	532, 556, 766
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	133, 612, 856
PscI	ACATGT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	136, 856
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	18, 491, 584, 759
SatI	GCNGC	3 cut(s)	132, 611, 855
Sau3AI	GATC	3 cut(s)	63, 411, 514
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	2 cut(s)	460, 553
SetI	ASST	7 cut(s)	253, 315, 457, 502, 615, 622, 703
SfcI	CTRYAG	2 cut(s)	132, 852
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	3 cut(s)	50, 353, 782
SmoI	CTYRAG	3 cut(s)	50, 353, 782
SphI	GCATGC	1 cut(s)	716
Sse9I	AATT	4 cut(s)	378, 580, 825, 838
SspMI	CTAG	2 cut(s)	621, 689
StyD4I	CCNGG	1 cut(s)	194
StyI	CCWWGG	2 cut(s)	370, 594
TaaI	ACNGT	2 cut(s)	101, 262
TaqI	TCGA	4 cut(s)	41, 656, 764, 819
TasI	AATT	4 cut(s)	378, 580, 825, 838
TatI	WGTACW	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	532, 556, 766
Tru1I	TTAA	4 cut(s)	18, 491, 584, 759
Tru9I	TTAA	4 cut(s)	18, 491, 584, 759
TscAI	CASTG	2 cut(s)	141, 211
TseI	GCWGC	3 cut(s)	131, 610, 854
TspDTI	ATGAA	2 cut(s)	138, 837
TspRI	CASTG	2 cut(s)	141, 211
XapI	RAATTY	1 cut(s)	825
XceI	RCATGY	2 cut(s)	163, 716
XmiI	GTMKAC	1 cut(s)	335
XspI	CTAG	2 cut(s)	621, 689
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.