MD08G1135000.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0024398
Physical Location & Seq
Reverse (-)
12831625 .. 12834228
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1135000.v1.1.491

Sequence Viewer

Length: 2511 bp
ATGCTACAAAATGAAATTTGGAGGGAAGTAACGGCCAAAAATGCGAGGATGGCCGTAGCCATTCCTGCTCTTCTCTCAAGCTTATCTTCCACACAAAAAACAACCAAAAATGAAGTCTTTAATCAAACCACCCGAGGATCAAACTGCGCCATCACCTTGTTGAGATCCTGCTCAAACCTCAGAGAATTCGCACCGATCCACGCCCGATTAATCACCACAAACCTCATCCGTGACCCCTTCACCGCGAGCCACGCTCTCTGGTTCTTCATCACCATCAAACATTCTCATCATGCTCATCAAATTTTCAGCCAAACCCACGAGACAGAGACCGTTATTTGTAACACCCTTATGGAAAACAAGCTCCGAAATGGAGCTTTTAGAGATGTACTTGTAACTTACTGTTATATGGTCAGTGAAGGAGTGCCTTTGGATGCATCCACTTTCCACTTCTTGATTCATGCTTGTTTGAGGCTTTTGGCCTTTCGACACGGGACAGAGATCCATGGACGGATTTTGAAAAATGGGTTGGGGGACAATAGGTCCCTGGTTAAGAATTTGATGGGATTGTACTCGAAATGTGGGAAGTTGGATGAAGTGCGGCAGCTGTTTGAGGAAATGCAGGCTGATGGGGTCAAACCCGATGGGATTACGATGCTTAGGTTAGTTTTGGCGTGCGCAAAGCTGAGGGATTTGGAAACGGGGGAGGAGTTCCACCGGTATATTGAGGAGAATGGATTGGAAATTGGGGGGAATTTGATGAATTGTATGGTGGATATGTATGTCAAGTGTGGCAGAATGGACAAGGCACTTGAGCTTGTTGGTAGAGGAAGCTCTGAGATTGATGTTGTTTTGGGGACTATTATGGTTGGTGGGTATGTGAAATCTAATGAAATATGTGCTGCTAGACTCCTGTTCGATCAGATGGCAGAAAAGAACTTGATTTCGTGGATGACGATGATTTCGGGTTATGTTCAAGGAGGTTACTATAAGGAAAGTCTGGAGTTGTTTAGGCAAATGAGGGAAACAGATTTGATCCCGGATGATGTTCTTATGGTCACAGTACTTTCGGCATGTGTTCACGTGGGAGATTCTGGGTTAGGCAGATCCATTCACGGTCTGGTTGTCAAATATGGAATGAATGTTGAAGGATTTCTTGGGAATGCTCTGATAGATTTGTATGCCAAATGTGAAAGGCTGTCAGAGGCTTGCTTAGTTTTTGAGCAGTTGCCTTGCAAGAGTGTCGTTTCGTGGAATTCGATGTTGGATGCGTTTTGCAGAAGTGGAGATGTTAGGAAGGCTAGACTCTTCTTCAATGAGATCCCTGAGAAGGATGTGGTCTCGTGGAACACCATGATCAACTGCTATTCTATGTCTCATCGATTCGGGGAAGTGTTTGGGTTGTTCCGTAAGATGCAGAGTTCAAATGTACAACCCGACAATGTCACGTTAGTCAGTGTACTATCTTCATGTGCCAGTGTTGCAGCCCTGAATCATGGCATTTGGGTTCATGTCTACATAAAAAAGAAACACATTGAAGTAGATAACATGTTGGGAACTGCTCTGATCGACATGTATGGAAAGTGCGGAAGCATCGAAAAAGCCTACGAGATATTCTCAGAGATGACTGAAAGAAATGTGTTTGTGTGGACTGCTATGATAGCAGCACATGCCATGGAAGGGCAAGCCACGAAAGCTATTGATCTCTACACAAAAATGGAAGCCCTATCAATAAAGCCGGATCACGTCACTTTCGTAGCTCTTCTATCTGCTTGTAGCCATGGAGGCTTAGTCAATGAAGGATACAGATACTTCAACAAGATGAGTAATGTCTACAACATTGTTCCTAAGATCCAGCACTATGGTTGTATGGTTGATCTCCTAGGTCGAGTCGGGTGCTTAGACGAGGCAGTAAAATTCATCGAAAACATGCCCATTAAACCAGATATCTCTATATGGAGTTCCTTGTTGAGAGCATGTGGAAGCCATCGCAACGTAACACTTGCAGAAAAAGCATTTCAGCAGCTCATAGAAATAGACCCTCAAAGTGATTCTGCTTATGCTCTTCTTTCCAACATTTATGAAAAAGCTGGAAGATTGGATGACGTGAGCTGGGCAAGAAAGAAGCTACATGAACTAGGAGTGAGAAAGCAGCCAGGATGCAGTCTGATAGAACAGGATGGAAATGTTCATGCATTTACAGCTTGGGATTTTTCAGACCCTCAATCTGCTGAGATTTATGCAATGCTGGATGAGATAAAGTGCTTACTACAAAAGCAGAAGCCGGAAGAAACTTCAGCTTACCACAGTGAAAGACTGGCAGTTGCTTTTGGTCTTATAAGCAACCCTCCCAGAACTCCGATTCGAGTAGTGAATAATCTGCAGATATGTAGAGATTGCCATTCAGCTATGAAACTGATATCACAGGCATACAACAGAGAGATTGTAATCAGAGATAACTACAGATTCCATCGGTTCGTTGACGGAAACTGCACTTGTAAAGATTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

837

Amino Acids

94.18

Weight (kDa)

6.73

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 110 - 156 3.7e-06 PPR repeat family
PPR_2 PF13041 185 - 226 8.8e-06 PPR repeat family
PPR PF01535 314 - 341 3.1e-06 PPR repeat
PPR_2 PF13041 413 - 444 4.7e-06 PPR repeat family
PPR PF01535 415 - 444 8e-07 PPR repeat
PPR_2 PF13041 443 - 491 2.8e-11 PPR repeat family
PPR PF01535 446 - 476 2.6e-06 PPR repeat
PPR_2 PF13041 544 - 592 6.6e-10 PPR repeat family
E_motif PF20431 662 - 724 3.4e-18 E motif
DYW_deaminase PF14432 762 - 836 2.5e-29 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024398)

Species Orthologous Gene IDs
malus_domestica MD08G1135000.v1.1
prunus_persica Prupe.1G464900_v2.0.a1
pyrus_communis pycom08g11390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2336
Acc16I TGCGCA 1 cut(s) 676
AccI GTMKAC 2 cut(s) 1512, 1830
AccII CGCG 1 cut(s) 245
AciI CCGC 3 cut(s) 243, 598, 1584
AclWI GGATC 9 cut(s) 145, 159, 190, 493, 1027, 1098, 1312, 1746, 1843
AcoI YGGCCR 2 cut(s) 33, 51
AcsI RAATTY 7 cut(s) 15, 185, 300, 553, 751, 1252, 1913
AcuI CTGAAG 1 cut(s) 2277
AcvI CACGTG 1 cut(s) 1081
AfaI GTAC 5 cut(s) 387, 569, 1062, 1428, 1458
AfiI CCNNNNNNNGG 2 cut(s) 1327, 1677
AflIII ACRYGT 2 cut(s) 1545, 1569
AgeI ACCGGT 1 cut(s) 714
AgsI TTSAA 7 cut(s) 517, 974, 1145, 1312, 1422, 1535, 1813
AhdI GACNNNNNGTC 1 cut(s) 538
AjiI CACGTC 2 cut(s) 1744, 2104
AjnI CCWGG 2 cut(s) 543, 2152
AjuI GAANNNNNNNTTGG 6 cut(s) 509, 541, 1137, 1169, 1244, 1276
Alw26I GTCTC 4 cut(s) 314, 320, 1342, 1377
AlwI GGATC 9 cut(s) 145, 159, 190, 493, 1027, 1098, 1312, 1746, 1843
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 3 cut(s) 33, 51, 477
ApeKI GCWGC 6 cut(s) 601, 899, 1481, 1661, 2020, 2149
ApoI RAATTY 7 cut(s) 15, 185, 300, 553, 751, 1252, 1913
ArsI GACNNNNNNTTYG 4 cut(s) 99, 131, 943, 975
AseI ATTAAT 1 cut(s) 209
AsiGI ACCGGT 1 cut(s) 714
Asp700I GAANNNNTTC 1 cut(s) 1149
AspA2I CCTAGG 1 cut(s) 1879
AspLEI GCGC 2 cut(s) 149, 677
AspS9I GGNCC 1 cut(s) 540
AsuC2I CCSGG 1 cut(s) 1037
AsuHPI GGTGA 4 cut(s) 145, 205, 232, 262
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 540
AvrII CCTAGG 1 cut(s) 1879
BauI CACGAG 2 cut(s) 317, 1339
BbrPI CACGTG 1 cut(s) 1081
BbvCI CCTCAGC 1 cut(s) 683
BbvI GCAGC 6 cut(s) 613, 886, 1493, 1673, 2032, 2161
BceAI ACGGC 2 cut(s) 38, 48
BcgI CGANNNNNNTGC 4 cut(s) 1222, 1256, 1875, 1909
BciT130I CCWGG 2 cut(s) 545, 2154
BciVI GTATCC 1 cut(s) 1793
BclI TGATCA 1 cut(s) 1353
BcnI CCSGG 1 cut(s) 1037
BcoDI GTCTC 4 cut(s) 314, 320, 1342, 1377
BfaI CTAG 4 cut(s) 903, 1299, 1880, 2135
BfmI CTRYAG 2 cut(s) 2378, 2458
BfuI GTATCC 1 cut(s) 1793
BglI GCCNNNNNGGC 1 cut(s) 1782
BisI GCNGC 7 cut(s) 599, 602, 900, 1482, 1662, 2021, 2150
BlnI CCTAGG 1 cut(s) 1879
BlsI GCNGC 7 cut(s) 600, 603, 901, 1483, 1663, 2022, 2151
BmcAI AGTACT 1 cut(s) 1062
Bme1390I CCNGG 3 cut(s) 545, 1037, 2154
Bme18I GGWCC 1 cut(s) 540
BmeRI GACNNNNNGTC 1 cut(s) 538
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 2 cut(s) 1744, 2104
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 542
BmrFI CCNGG 3 cut(s) 545, 1037, 2154
BmsI GCATC 7 cut(s) 421, 443, 642, 1255, 1401, 1599, 2147
BplI GAGNNNNNCTC 4 cut(s) 238, 270, 1598, 1630
BpmI CTGGAG 1 cut(s) 1019
Bpu10I CCTNAGC 2 cut(s) 656, 683
BpuEI CTTGAG 2 cut(s) 61, 830
BpuMI CCSGG 1 cut(s) 1037
Bsa29I ATCGAT 1 cut(s) 1378
BsaAI YACGTR 1 cut(s) 1081
BsaBI GATNNNNATC 1 cut(s) 2444
BsaI GGTCTC 2 cut(s) 320, 1342
BsaJI CCNNGG 6 cut(s) 133, 502, 543, 1671, 1777, 1879
BsaWI WCCGGW 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 1773, 1803
Bsc4I CCNNNNNNNGG 2 cut(s) 1327, 1677
Bse118I RCCGGY 1 cut(s) 714
Bse1I ACTGG 2 cut(s) 1473, 2319
Bse3DI GCAATG 1 cut(s) 2247
Bse8I GATNNNNATC 1 cut(s) 2444
BseBI CCWGG 2 cut(s) 545, 2154
BseCI ATCGAT 1 cut(s) 1378
BseDI CCNNGG 6 cut(s) 133, 502, 543, 1671, 1777, 1879
BseJI GATNNNNATC 1 cut(s) 2444
BseLI CCNNNNNNNGG 2 cut(s) 1327, 1677
BseMI GCAATG 1 cut(s) 2247
BseMII CTCAG 6 cut(s) 193, 674, 825, 1314, 1629, 2220
BseNI ACTGG 2 cut(s) 1473, 2319
BseRI GAGGAG 2 cut(s) 719, 740
BseXI GCAGC 6 cut(s) 613, 886, 1493, 1673, 2032, 2161
BseYI CCCAGC 1 cut(s) 2109
BsgI GTGCAG 1 cut(s) 2473
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 3 cut(s) 35, 53, 479
BshTI ACCGGT 1 cut(s) 714
BshVI ATCGAT 1 cut(s) 1378
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 4 cut(s) 715, 1037, 1736, 2282
BslFI GGGAC 4 cut(s) 505, 526, 545, 868
BslI CCNNNNNNNGG 2 cut(s) 1327, 1677
BsmAI GTCTC 4 cut(s) 314, 320, 1342, 1377
BsmFI GGGAC 4 cut(s) 505, 526, 545, 868
BsmI GAATGC 1 cut(s) 1165
BsnI GGCC 3 cut(s) 35, 53, 479
Bso31I GGTCTC 2 cut(s) 320, 1342
BsoBI CYCGRG 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 1426
Bsp19I CCATGG 3 cut(s) 502, 1671, 1777
BspACI CCGC 3 cut(s) 243, 598, 1584
BspANI GGCC 3 cut(s) 35, 53, 479
BspCNI CTCAG 6 cut(s) 192, 675, 826, 1315, 1628, 2221
BspDI ATCGAT 1 cut(s) 1378
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 542
BspMAI CTGCAG 1 cut(s) 2382
BspPI GGATC 9 cut(s) 145, 159, 190, 493, 1027, 1098, 1312, 1746, 1843
BspQI GCTCTTC 3 cut(s) 75, 1764, 2067
BspTNI GGTCTC 2 cut(s) 320, 1342
BsrDI GCAATG 1 cut(s) 2247
BsrFI RCCGGY 1 cut(s) 714
BsrGI TGTACA 1 cut(s) 1426
BsrI ACTGG 2 cut(s) 1473, 2319
BssAI RCCGGY 1 cut(s) 714
BssECI CCNNGG 6 cut(s) 133, 502, 543, 1671, 1777, 1879
BssSI CACGAG 2 cut(s) 317, 1339
BssT1I CCWWGG 4 cut(s) 502, 1671, 1777, 1879
Bst2BI CACGAG 2 cut(s) 317, 1339
Bst2UI CCWGG 2 cut(s) 545, 2154
Bst4CI ACNGT 5 cut(s) 331, 401, 1060, 1115, 2306
Bst6I CTCTTC 4 cut(s) 75, 1310, 1764, 2067
BstAPI GCANNNNNTGC 1 cut(s) 1667
BstAUI TGTACA 1 cut(s) 1426
BstBAI YACGTR 1 cut(s) 1081
BstC8I GCNNGC 5 cut(s) 247, 621, 673, 1207, 1683
BstDSI CCRYGG 3 cut(s) 502, 1671, 1777
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 2 cut(s) 149, 677
BstMAI GTCTC 4 cut(s) 314, 320, 1342, 1377
BstNI CCWGG 2 cut(s) 545, 2154
BstNSI RCATGY 6 cut(s) 1074, 1549, 1573, 1670, 1930, 1977
BstSCI CCNGG 3 cut(s) 543, 1035, 2152
BstSFI CTRYAG 2 cut(s) 2378, 2458
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 6 cut(s) 613, 886, 1493, 1673, 2032, 2161
BstX2I RGATCY 5 cut(s) 164, 498, 1103, 1317, 1848
BstXI CCANNNNNNTGG 1 cut(s) 1859
BstYI RGATCY 5 cut(s) 164, 498, 1103, 1317, 1848
Bsu15I ATCGAT 1 cut(s) 1378
BsuI GTATCC 1 cut(s) 1793
BsuRI GGCC 3 cut(s) 35, 53, 479
BsuTUI ATCGAT 1 cut(s) 1378
BtgI CCRYGG 3 cut(s) 502, 1671, 1777
BtgZI GCGATG 1 cut(s) 1970
BtrI CACGTC 2 cut(s) 1744, 2104
BtsIMutI CAGTG 4 cut(s) 418, 1459, 1480, 2311
Cac8I GCNNGC 5 cut(s) 247, 621, 673, 1207, 1683
CfoI GCGC 2 cut(s) 149, 677
Cfr10I RCCGGY 1 cut(s) 714
Cfr13I GGNCC 1 cut(s) 540
ClaI ATCGAT 1 cut(s) 1378
Csp6I GTAC 5 cut(s) 386, 568, 1061, 1427, 1457
CspAI ACCGGT 1 cut(s) 714
CviQI GTAC 5 cut(s) 386, 568, 1061, 1427, 1457
DriI GACNNNNNGTC 1 cut(s) 538
EaeI YGGCCR 2 cut(s) 33, 51
Eam1104I CTCTTC 4 cut(s) 75, 1310, 1764, 2067
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 4 cut(s) 75, 1310, 1764, 2067
Eco130I CCWWGG 4 cut(s) 502, 1671, 1777, 1879
Eco31I GGTCTC 2 cut(s) 320, 1342
Eco32I GATATC 2 cut(s) 1945, 2418
Eco47I GGWCC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 2277
Eco72I CACGTG 1 cut(s) 1081
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 540
EcoRI GAATTC 2 cut(s) 185, 1252
EcoRII CCWGG 2 cut(s) 543, 2152
EcoRV GATATC 2 cut(s) 1945, 2418
EcoT14I CCWWGG 4 cut(s) 502, 1671, 1777, 1879
EcoT22I ATGCAT 2 cut(s) 436, 2194
ErhI CCWWGG 4 cut(s) 502, 1671, 1777, 1879
FalI AAGNNNNNCTT 4 cut(s) 70, 102, 1137, 1169
FaqI GGGAC 4 cut(s) 505, 526, 545, 868
FbaI TGATCA 1 cut(s) 1353
FblI GTMKAC 2 cut(s) 1512, 1830
Fnu4HI GCNGC 7 cut(s) 599, 602, 900, 1482, 1662, 2021, 2150
Fsp4HI GCNGC 7 cut(s) 599, 602, 900, 1482, 1662, 2021, 2150
FspBI CTAG 4 cut(s) 903, 1299, 1880, 2135
FspI TGCGCA 1 cut(s) 676
GlaI GCGC 2 cut(s) 148, 676
GluI GCNGC 7 cut(s) 599, 602, 900, 1482, 1662, 2021, 2150
GsaI CCCAGC 1 cut(s) 2113
GsuI CTGGAG 1 cut(s) 1019
HaeIII GGCC 3 cut(s) 35, 53, 479
HapII CCGG 4 cut(s) 715, 1037, 1736, 2282
HhaI GCGC 2 cut(s) 149, 677
Hin6I GCGC 2 cut(s) 147, 675
HinP1I GCGC 2 cut(s) 147, 675
HincII GTYRAC 1 cut(s) 2479
HindII GTYRAC 1 cut(s) 2479
HindIII AAGCTT 1 cut(s) 79
HpaII CCGG 4 cut(s) 715, 1037, 1736, 2282
HphI GGTGA 4 cut(s) 145, 205, 232, 262
Hpy166II GTNNAC 6 cut(s) 1078, 1457, 1513, 1647, 1831, 2479
Hpy188III TCNNGA 2 cut(s) 451, 998
Hpy8I GTNNAC 6 cut(s) 1078, 1457, 1513, 1647, 1831, 2479
HpyAV CCTTC 7 cut(s) 247, 410, 1139, 1288, 1321, 1670, 1790
HpyCH4III ACNGT 5 cut(s) 331, 401, 1060, 1115, 2306
HpyCH4IV ACGT 5 cut(s) 1080, 1445, 1743, 1992, 2103
HpySE526I ACGT 5 cut(s) 1080, 1445, 1743, 1992, 2103
HspAI GCGC 2 cut(s) 147, 675
Ksp22I TGATCA 1 cut(s) 1353
LguI GCTCTTC 3 cut(s) 75, 1764, 2067
LmnI GCTCC 2 cut(s) 366, 371
Lsp1109I GCAGC 6 cut(s) 613, 886, 1493, 1673, 2032, 2161
LweI GCATC 7 cut(s) 421, 443, 642, 1255, 1401, 1599, 2147
MaeI CTAG 4 cut(s) 903, 1299, 1880, 2135
MaeII ACGT 5 cut(s) 1080, 1445, 1743, 1992, 2103
MaeIII GTNAC 9 cut(s) 28, 230, 338, 391, 980, 1054, 1441, 1744, 1993
MflI RGATCY 5 cut(s) 164, 498, 1103, 1317, 1848
MluCI AATT 9 cut(s) 15, 185, 300, 553, 741, 751, 760, 1252, 1913
MlyI GAGTC 3 cut(s) 900, 1296, 1896
MmeI TCCRAC 3 cut(s) 567, 1242, 2094
Mph1103I ATGCAT 2 cut(s) 436, 2194
MroXI GAANNNNTTC 1 cut(s) 1149
MseI TTAA 4 cut(s) 120, 209, 549, 1935
MslI CAYNNNNRTG 2 cut(s) 347, 1712
MspA1I CMGCKG 1 cut(s) 604
MspI CCGG 4 cut(s) 715, 1037, 1736, 2282
MspR9I CCNGG 3 cut(s) 545, 1037, 2154
Mva1269I GAATGC 1 cut(s) 1165
MvaI CCWGG 2 cut(s) 545, 2154
MvnI CGCG 1 cut(s) 245
NciI CCSGG 1 cut(s) 1037
NcoI CCATGG 3 cut(s) 502, 1671, 1777
NlaIV GGNNCC 1 cut(s) 542
NmuCI GTSAC 4 cut(s) 230, 1054, 1441, 1744
NsbI TGCGCA 1 cut(s) 676
NsiI ATGCAT 2 cut(s) 436, 2194
NspI RCATGY 6 cut(s) 1074, 1549, 1573, 1670, 1930, 1977
PciI ACATGT 2 cut(s) 1545, 1569
PciSI GCTCTTC 3 cut(s) 75, 1764, 2067
PcsI WCGNNNNNNNCGW 3 cut(s) 950, 1253, 1749
PctI GAATGC 1 cut(s) 1165
PdmI GAANNNNTTC 1 cut(s) 1149
PfeI GAWTC 7 cut(s) 454, 1088, 1380, 1489, 2048, 2359, 2463
PflFI GACNNNGTC 1 cut(s) 1439
PfoI TCCNGGA 1 cut(s) 1035
PinAI ACCGGT 1 cut(s) 714
PkrI GCNGC 7 cut(s) 600, 603, 901, 1483, 1663, 2022, 2151
PleI GAGTC 3 cut(s) 900, 1296, 1895
PmaCI CACGTG 1 cut(s) 1081
PmlI CACGTG 1 cut(s) 1081
PpsI GAGTC 3 cut(s) 900, 1296, 1895
Ppu21I YACGTR 1 cut(s) 1081
PpuMI RGGWCCY 1 cut(s) 540
PscI ACATGT 2 cut(s) 1545, 1569
PshBI ATTAAT 1 cut(s) 209
PsiI TTATAA 1 cut(s) 2336
Psp5II RGGWCCY 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 543, 2152
PspCI CACGTG 1 cut(s) 1081
PspFI CCCAGC 1 cut(s) 2109
PspGI CCWGG 2 cut(s) 543, 2152
PspN4I GGNNCC 1 cut(s) 542
PspPI GGNCC 1 cut(s) 540
PspPPI RGGWCCY 1 cut(s) 540
PstI CTGCAG 1 cut(s) 2382
PsuI RGATCY 5 cut(s) 164, 498, 1103, 1317, 1848
PsyI GACNNNGTC 1 cut(s) 1439
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 5 cut(s) 387, 569, 1062, 1428, 1458
RsaNI GTAC 5 cut(s) 386, 568, 1061, 1427, 1457
RseI CAYNNNNRTG 2 cut(s) 347, 1712
SapI GCTCTTC 3 cut(s) 75, 1764, 2067
SaqAI TTAA 4 cut(s) 120, 209, 549, 1935
SatI GCNGC 7 cut(s) 599, 602, 900, 1482, 1662, 2021, 2150
Sau96I GGNCC 1 cut(s) 540
ScaI AGTACT 1 cut(s) 1062
SchI GAGTC 3 cut(s) 900, 1296, 1896
ScrFI CCNGG 3 cut(s) 545, 1037, 2154
SfaNI GCATC 7 cut(s) 421, 443, 642, 1255, 1401, 1599, 2147
SfcI CTRYAG 2 cut(s) 2378, 2458
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 2 cut(s) 347, 1712
SmlI CTYRAG 2 cut(s) 76, 809
SmoI CTYRAG 2 cut(s) 76, 809
Sse9I AATT 9 cut(s) 15, 185, 300, 553, 741, 751, 760, 1252, 1913
SsiI CCGC 3 cut(s) 243, 598, 1584
SspMI CTAG 4 cut(s) 903, 1299, 1880, 2135
StyD4I CCNGG 3 cut(s) 543, 1035, 2152
StyI CCWWGG 4 cut(s) 502, 1671, 1777, 1879
TaaI ACNGT 5 cut(s) 331, 401, 1060, 1115, 2306
TaiI ACGT 5 cut(s) 1083, 1448, 1746, 1995, 2106
TasI AATT 9 cut(s) 15, 185, 300, 553, 741, 751, 760, 1252, 1913
TatI WGTACW 5 cut(s) 385, 567, 1060, 1426, 1456
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 7 cut(s) 454, 1088, 1380, 1489, 2048, 2359, 2463
Tru1I TTAA 4 cut(s) 120, 209, 549, 1935
Tru9I TTAA 4 cut(s) 120, 209, 549, 1935
TscAI CASTG 4 cut(s) 418, 1459, 1480, 2311
TseFI GTSAC 4 cut(s) 230, 1054, 1441, 1744
TseI GCWGC 6 cut(s) 601, 899, 1481, 1661, 2020, 2149
Tsp45I GTSAC 4 cut(s) 230, 1054, 1441, 1744
TspGWI ACGGA 4 cut(s) 218, 523, 1394, 2496
TspRI CASTG 4 cut(s) 418, 1459, 1480, 2311
Tth111I GACNNNGTC 1 cut(s) 1439
VpaK11BI GGWCC 1 cut(s) 540
VspI ATTAAT 1 cut(s) 209
XapI RAATTY 7 cut(s) 15, 185, 300, 553, 751, 1252, 1913
XceI RCATGY 6 cut(s) 1074, 1549, 1573, 1670, 1930, 1977
XcmI CCANNNNNNNNNTGG 1 cut(s) 1114
XmaJI CCTAGG 1 cut(s) 1879
XmiI GTMKAC 2 cut(s) 1512, 1830
XmnI GAANNNNTTC 1 cut(s) 1149
XspI CTAG 4 cut(s) 903, 1299, 1880, 2135
ZrmI AGTACT 1 cut(s) 1062
Zsp2I ATGCAT 2 cut(s) 436, 2194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.