pycom08g11390

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0024398
Physical Location & Seq
Reverse (-)
9643752 .. 9646307
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g11390.1

Sequence Viewer

Length: 2475 bp
ATGGCCGTAGCCATTCCTACTCTTCTCTCAAGCTTATCTTCCACACAAAAAACAACCAAAAATGAAGTCTTTAATCAAACCACCCGAGGATCAAACTGCGCCATCACCTTGTTGAGATCCTGCTCAAACCTCAGAGAATTCGCACCGATCCACGCCCGATTAATCACCACAAACCTCATCCGTGACCCCTCCACGGCGAGCCACGCTCTCTGGTTCTTCATCACCATCGAACATTCTCATCATGCTCATCAAATTTTCAGCCAAACCCACGAGACAGAGACCGTTATTTGTAACACCCTTATGGAAAACAAGCTCCGAAATGGAGCTTTTAGAGATGTACTTGTAACTTACTGTTATATGGTCAGTGAAAGAGTGCCTTTGGATGCATCCACTTTCCACTTCTTGATTCATGCTTGTTCGAGGCTTTTGGCCTTTCGACACGGGACAGAGATCCATGGACGGATTTTGAAAAATGGGTTGGGGGACAATAGGTCCCTGGTTAACAATTTGATGGGATTGTATTCGAAATGTGGGAAGGTGGATGAAGTGCGGCAGCTGTTTGAGGTATTGCCTGAGAGAGATGTGGTTAGTTGGAATACGATGATATCGTGCAATGTGCACATGGGAATGTGTTGTGAGGCTTTGAGTTTGTTTCAGGAAATGCAGGCTGATGGGGTCAAACCCGATGGGATTACGATGCTTAGCTTAGTTTCTGCGTGCGCAAAGCTGAGGGATTTGGAAACGGGGGAGGAGTTGCACCGGTATATTGAGGAGAATGGATTGGACATTGGGGGGAATTTGATGAATTGTATGGTGGATATGTATGTCAAGTGTGGGAGAATGGATAAGGCACTTGAGCTTGTTGGTAGAGGAAGCTCTGAGATTGATATTGTTTTGGGGACTATTATGGTTGGTGGGTATGTGAAATTTAATGAAATATGTGCTGCTAGGCGCCTGTTCGATCAGATGGCAGAAAAGAACTTGATTTCATGGATGACGATGATTTCGGGTTATGTTCAAGGAGGTTACCATAAGGAAAGTCTGGAGTTGTTTAGGCAAATGAGGGAAACAGATTTGATCCCAGATGATGTTCTTATGGTCCCAGTACTTTCGGCATGTGTTCACGTGGGAGATTCCGGGATAGGCAGATCCATTCACGGTCTGGTTGTCAAATATGGAATGAATGTTGAAGGATTTCTTGGGAATGCTCTGATAGATTTGTATGCCAAATGTGAAAGGCTAAGTGGAGATGTTAGGAAGGCTAGACTCTTCTTCAATGAGATCCCTGAGAAGGATGTGGTCTCGTGGAACACCATGATCAACTGCTATTCTATGTCTCATCGATTCGGGGAAGTGTTTGGGTTGTTCCGTAAGATGCAGAGTTCAAATGTACAACCCGACAATGTCACGTTAGTCAGTGTACTATCTTCATGTGCCAGTGTTGCAGCCCTGAATCATGGCATTTGGGTTCATGTCTACATAAAAAAGAAACACATTGAAGTAGATAACATGTTGGGAACTGCTTTGATCGACATGTATGGAAAGTGCGGAAGCATCGAAAAAGCCTACGAGATATTCTCAGAGATGACTGAAAGAAATGTGTTTGTGTGGACTGCTATGATAGCAGCACATGCCATGGAAGGGCAAACCACGAAAGCTATTGATCTCTACACAAAAATGGAAGCCCTATCAATAAAGCCGGATCACGTCACTTTCGTAGCTCTTCTATCTGCTTGTAGCCATGGAGGCTTAGTCAATGAAGGATACAGATACTTCAACAAGATGAGTAATGTCTACAACATTGTTCCTAAGATCCAGCACTATGGTTGTATGGTTGATCTCCTAGGTCGCGTCGGGTGCTTAGACGAGGCAGTAAAATTCATCGAAAACATGCCCATTAAACCAGATATCTCTATTTGGAGTTCCTTGTTGAGAGCATGTGGAAGCCATCGGAACGTAACACTTGCAGAAAAAGCATTTCAGCAGCTCATAGAAATAGACCCTCAAAGTGCTTCTGCTTATGCTCTTCTTTCCAACATTTATGAAAAAGCTGGAAGATTGGATGACGTGAGCTGGGCAAGAAAGAAGCTACATGAACTAGGAGTGAGAAAGCAGCCAGGATGCAGTCTGATAGAACAAGATGGAAATGTACACGCATTTACAGCTTGGGATTTTTCAGACCCTCAATCTGCTGAGATTTATGCAATGCTGGATGAGATGAAGTGCTTACTACAAAAGCAGAAGCCGGAAGAAACTTCAGCTTACCACAGTGAAAGACTGGCAGTTGCTTTTGGTCTTATAAGCAATCCTCCGAGAACTCCGATTCGAGTAGTGAATAATCTGCAGATATGTAGAGATTGCCATTCAGCTATGAAACTGATATCACAGGCGTATAACAGAGAGATTGTAATCAGAGATAACTACAGATTCCATCGGTTCGTTGACGGAAACTGCACTTGTAAAGATTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

825

Amino Acids

92.65

Weight (kDa)

6.51

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 193 - 242 4.5e-10 PPR repeat family
PPR PF01535 196 - 226 6.7e-06 PPR repeat
PPR PF01535 329 - 356 5.3e-06 PPR repeat
PPR_2 PF13041 431 - 479 2.7e-11 PPR repeat family
PPR PF01535 434 - 464 2.6e-06 PPR repeat
PPR_2 PF13041 532 - 580 3.9e-10 PPR repeat family
E_motif PF20431 650 - 712 1.7e-17 E motif
DYW_deaminase PF14432 750 - 824 2.6e-29 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024398)

Species Orthologous Gene IDs
malus_domestica MD08G1135000.v1.1
prunus_persica Prupe.1G464900_v2.0.a1
pyrus_communis pycom08g11390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2300
Acc16I TGCGCA 1 cut(s) 721
AccB1I GGYRCC 1 cut(s) 951
AccI GTMKAC 2 cut(s) 1476, 1794
AccII CGCG 1 cut(s) 1851
AciI CCGC 2 cut(s) 550, 1548
AclWI GGATC 9 cut(s) 97, 111, 142, 445, 1072, 1143, 1276, 1710, 1807
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 137, 252, 796, 926, 1877
AcuI CTGAAG 1 cut(s) 2241
AcvI CACGTG 1 cut(s) 1126
AcyI GRCGYC 1 cut(s) 952
AfaI GTAC 5 cut(s) 339, 1107, 1392, 1422, 2151
AfiI CCNNNNNNNGG 3 cut(s) 193, 1291, 1641
AflIII ACRYGT 2 cut(s) 1509, 1533
AgeI ACCGGT 1 cut(s) 759
AgsI TTSAA 7 cut(s) 469, 1019, 1190, 1276, 1386, 1499, 1777
AhdI GACNNNNNGTC 1 cut(s) 490
AjiI CACGTC 2 cut(s) 1708, 2068
AjnI CCWGG 2 cut(s) 495, 2116
AjuI GAANNNNNNNTTGG 4 cut(s) 461, 493, 1182, 1214
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 4 cut(s) 266, 272, 1306, 1341
Alw44I GTGCAC 1 cut(s) 617
AlwI GGATC 9 cut(s) 97, 111, 142, 445, 1072, 1143, 1276, 1710, 1807
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 2 cut(s) 3, 429
ApaLI GTGCAC 1 cut(s) 617
ApeKI GCWGC 6 cut(s) 553, 944, 1445, 1625, 1984, 2113
ApoI RAATTY 5 cut(s) 137, 252, 796, 926, 1877
ArsI GACNNNNNNTTYG 4 cut(s) 51, 83, 988, 1020
AseI ATTAAT 1 cut(s) 161
AsiGI ACCGGT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 1194
AspA2I CCTAGG 1 cut(s) 1843
AspLEI GCGC 3 cut(s) 101, 722, 954
AspS9I GGNCC 2 cut(s) 492, 1099
AsuC2I CCSGG 1 cut(s) 1138
AsuHPI GGTGA 3 cut(s) 97, 157, 214
AsuII TTCGAA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 2 cut(s) 492, 1099
AvrII CCTAGG 1 cut(s) 1843
BaeGI GKGCMC 1 cut(s) 621
BanI GGYRCC 1 cut(s) 951
BauI CACGAG 2 cut(s) 269, 1303
BbrPI CACGTG 1 cut(s) 1126
Bbv12I GWGCWC 1 cut(s) 621
BbvCI CCTCAGC 1 cut(s) 728
BbvI GCAGC 6 cut(s) 565, 931, 1457, 1637, 1996, 2125
BccI CCATC 9 cut(s) 110, 233, 505, 665, 680, 961, 1956, 2135, 2439
BceAI ACGGC 1 cut(s) 210
BciT130I CCWGG 2 cut(s) 497, 2118
BciVI GTATCC 1 cut(s) 1757
BclI TGATCA 1 cut(s) 1317
BcnI CCSGG 1 cut(s) 1138
BcoDI GTCTC 4 cut(s) 266, 272, 1306, 1341
BfaI CTAG 4 cut(s) 948, 1263, 1844, 2099
BfmI CTRYAG 2 cut(s) 2342, 2422
BfoI RGCGCY 1 cut(s) 955
BfuI GTATCC 1 cut(s) 1757
BglI GCCNNNNNGGC 1 cut(s) 1746
BisI GCNGC 7 cut(s) 551, 554, 945, 1446, 1626, 1985, 2114
BlnI CCTAGG 1 cut(s) 1843
BlpI GCTNAGC 1 cut(s) 701
BlsI GCNGC 7 cut(s) 552, 555, 946, 1447, 1627, 1986, 2115
BmcAI AGTACT 1 cut(s) 1107
Bme1390I CCNGG 3 cut(s) 497, 1138, 2118
Bme18I GGWCC 2 cut(s) 492, 1099
BmeRI GACNNNNNGTC 1 cut(s) 490
BmeT110I CYCGRG 1 cut(s) 84
BmgBI CACGTC 2 cut(s) 1708, 2068
BmgT120I GGNCC 2 cut(s) 492, 1099
BmiI GGNNCC 3 cut(s) 494, 953, 1101
BmrFI CCNGG 3 cut(s) 497, 1138, 2118
BmrI ACTGGG 1 cut(s) 1097
BmsI GCATC 6 cut(s) 373, 395, 687, 1365, 1563, 2111
BmuI ACTGGG 1 cut(s) 1097
BplI GAGNNNNNCTC 4 cut(s) 190, 222, 1562, 1594
BpmI CTGGAG 1 cut(s) 1064
Bpu10I CCTNAGC 1 cut(s) 728
Bpu1102I GCTNAGC 1 cut(s) 701
Bpu14I TTCGAA 1 cut(s) 524
BpuEI CTTGAG 2 cut(s) 13, 875
BpuMI CCSGG 1 cut(s) 1138
Bsa29I ATCGAT 1 cut(s) 1342
BsaAI YACGTR 1 cut(s) 1126
BsaBI GATNNNNATC 1 cut(s) 2408
BsaHI GRCGYC 1 cut(s) 952
BsaI GGTCTC 2 cut(s) 272, 1306
BsaJI CCNNGG 7 cut(s) 85, 192, 454, 495, 1635, 1741, 1843
BsaWI WCCGGW 1 cut(s) 759
BsaXI ACNNNNNCTCC 2 cut(s) 1737, 1767
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 1291, 1641
Bse118I RCCGGY 1 cut(s) 759
Bse1I ACTGG 3 cut(s) 1103, 1437, 2283
Bse3DI GCAATG 2 cut(s) 619, 2211
Bse8I GATNNNNATC 1 cut(s) 2408
BseBI CCWGG 2 cut(s) 497, 2118
BseCI ATCGAT 1 cut(s) 1342
BseDI CCNNGG 7 cut(s) 85, 192, 454, 495, 1635, 1741, 1843
BseGI GGATG 9 cut(s) 177, 386, 388, 547, 999, 1300, 2068, 2126, 2218
BseJI GATNNNNATC 1 cut(s) 2408
BseLI CCNNNNNNNGG 3 cut(s) 193, 1291, 1641
BseMI GCAATG 2 cut(s) 619, 2211
BseMII CTCAG 7 cut(s) 145, 564, 719, 870, 1278, 1593, 2184
BseNI ACTGG 3 cut(s) 1103, 1437, 2283
BseRI GAGGAG 2 cut(s) 764, 785
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 6 cut(s) 565, 931, 1457, 1637, 1996, 2125
BseYI CCCAGC 1 cut(s) 2073
BsgI GTGCAG 1 cut(s) 2437
Bsh1236I CGCG 1 cut(s) 1851
BshFI GGCC 2 cut(s) 5, 431
BshNI GGYRCC 1 cut(s) 951
BshTI ACCGGT 1 cut(s) 759
BshVI ATCGAT 1 cut(s) 1342
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 4 cut(s) 760, 1137, 1700, 2246
BslFI GGGAC 5 cut(s) 457, 478, 497, 913, 1085
BslI CCNNNNNNNGG 3 cut(s) 193, 1291, 1641
BsmAI GTCTC 4 cut(s) 266, 272, 1306, 1341
BsmFI GGGAC 5 cut(s) 457, 478, 497, 913, 1085
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 2 cut(s) 5, 431
Bso31I GGTCTC 2 cut(s) 272, 1306
BsoBI CYCGRG 1 cut(s) 84
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 621
Bsp1407I TGTACA 2 cut(s) 1390, 2149
Bsp1720I GCTNAGC 1 cut(s) 701
Bsp19I CCATGG 3 cut(s) 454, 1635, 1741
BspACI CCGC 2 cut(s) 550, 1548
BspANI GGCC 2 cut(s) 5, 431
BspCNI CTCAG 7 cut(s) 144, 565, 720, 871, 1279, 1592, 2185
BspDI ATCGAT 1 cut(s) 1342
BspFNI CGCG 1 cut(s) 1851
BspLI GGNNCC 3 cut(s) 494, 953, 1101
BspMAI CTGCAG 1 cut(s) 2346
BspPI GGATC 9 cut(s) 97, 111, 142, 445, 1072, 1143, 1276, 1710, 1807
BspQI GCTCTTC 2 cut(s) 1728, 2031
BspT104I TTCGAA 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 951
BspTNI GGTCTC 2 cut(s) 272, 1306
BsrDI GCAATG 2 cut(s) 619, 2211
BsrFI RCCGGY 1 cut(s) 759
BsrGI TGTACA 2 cut(s) 1390, 2149
BsrI ACTGG 3 cut(s) 1103, 1437, 2283
BssAI RCCGGY 1 cut(s) 759
BssECI CCNNGG 7 cut(s) 85, 192, 454, 495, 1635, 1741, 1843
BssNI GRCGYC 1 cut(s) 952
BssSI CACGAG 2 cut(s) 269, 1303
BssT1I CCWWGG 4 cut(s) 454, 1635, 1741, 1843
Bst2BI CACGAG 2 cut(s) 269, 1303
Bst2UI CCWGG 2 cut(s) 497, 2118
Bst4CI ACNGT 4 cut(s) 283, 353, 1160, 2270
Bst6I CTCTTC 4 cut(s) 27, 1274, 1728, 2031
BstACI GRCGYC 1 cut(s) 952
BstAPI GCANNNNNTGC 1 cut(s) 1631
BstAUI TGTACA 2 cut(s) 1390, 2149
BstBAI YACGTR 1 cut(s) 1126
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 199, 666, 718
BstDSI CCRYGG 4 cut(s) 192, 454, 1635, 1741
BstEII GGTNACC 1 cut(s) 1025
BstF5I GGATG 9 cut(s) 177, 386, 388, 547, 999, 1300, 2068, 2126, 2218
BstFNI CGCG 1 cut(s) 1851
BstH2I RGCGCY 1 cut(s) 955
BstHHI GCGC 3 cut(s) 101, 722, 954
BstMAI GTCTC 4 cut(s) 266, 272, 1306, 1341
BstMWI GCNNNNNNNGC 8 cut(s) 203, 1442, 1622, 1631, 1746, 1857, 1973, 2162
BstNI CCWGG 2 cut(s) 497, 2118
BstNSI RCATGY 6 cut(s) 1119, 1513, 1537, 1634, 1894, 1941
BstPI GGTNACC 1 cut(s) 1025
BstSCI CCNGG 3 cut(s) 495, 1136, 2116
BstSFI CTRYAG 2 cut(s) 2342, 2422
BstSLI GKGCMC 1 cut(s) 621
BstUI CGCG 1 cut(s) 1851
BstV1I GCAGC 6 cut(s) 565, 931, 1457, 1637, 1996, 2125
BstX2I RGATCY 5 cut(s) 116, 450, 1148, 1281, 1812
BstXI CCANNNNNNTGG 1 cut(s) 1823
BstYI RGATCY 5 cut(s) 116, 450, 1148, 1281, 1812
Bsu15I ATCGAT 1 cut(s) 1342
BsuI GTATCC 1 cut(s) 1757
BsuRI GGCC 2 cut(s) 5, 431
BsuTUI ATCGAT 1 cut(s) 1342
BtgI CCRYGG 4 cut(s) 192, 454, 1635, 1741
BtrI CACGTC 2 cut(s) 1708, 2068
BtsCI GGATG 9 cut(s) 177, 386, 388, 547, 999, 1300, 2068, 2126, 2218
BtsIMutI CAGTG 4 cut(s) 370, 1423, 1444, 2275
Cac8I GCNNGC 3 cut(s) 199, 666, 718
CfoI GCGC 3 cut(s) 101, 722, 954
Cfr10I RCCGGY 1 cut(s) 759
Cfr13I GGNCC 2 cut(s) 492, 1099
ClaI ATCGAT 1 cut(s) 1342
CseI GACGC 1 cut(s) 1840
Csp6I GTAC 5 cut(s) 338, 1106, 1391, 1421, 2150
CspAI ACCGGT 1 cut(s) 759
CviQI GTAC 5 cut(s) 338, 1106, 1391, 1421, 2150
DinI GGCGCC 1 cut(s) 953
DriI GACNNNNNGTC 1 cut(s) 490
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 27, 1274, 1728, 2031
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 4 cut(s) 27, 1274, 1728, 2031
Eco130I CCWWGG 4 cut(s) 454, 1635, 1741, 1843
Eco31I GGTCTC 2 cut(s) 272, 1306
Eco32I GATATC 3 cut(s) 606, 1909, 2382
Eco47I GGWCC 2 cut(s) 492, 1099
Eco57I CTGAAG 1 cut(s) 2241
Eco72I CACGTG 1 cut(s) 1126
Eco88I CYCGRG 1 cut(s) 84
Eco91I GGTNACC 1 cut(s) 1025
EcoO109I RGGNCCY 1 cut(s) 492
EcoO65I GGTNACC 1 cut(s) 1025
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 495, 2116
EcoRV GATATC 3 cut(s) 606, 1909, 2382
EcoT14I CCWWGG 4 cut(s) 454, 1635, 1741, 1843
EcoT22I ATGCAT 1 cut(s) 388
EgeI GGCGCC 1 cut(s) 953
EheI GGCGCC 1 cut(s) 953
ErhI CCWWGG 4 cut(s) 454, 1635, 1741, 1843
FalI AAGNNNNNCTT 6 cut(s) 22, 54, 361, 393, 1182, 1214
FaqI GGGAC 5 cut(s) 457, 478, 497, 913, 1085
FbaI TGATCA 1 cut(s) 1317
FblI GTMKAC 2 cut(s) 1476, 1794
Fnu4HI GCNGC 7 cut(s) 551, 554, 945, 1446, 1626, 1985, 2114
FokI GGATG 9 cut(s) 164, 373, 395, 554, 1006, 1307, 2075, 2133, 2225
Fsp4HI GCNGC 7 cut(s) 551, 554, 945, 1446, 1626, 1985, 2114
FspBI CTAG 4 cut(s) 948, 1263, 1844, 2099
FspI TGCGCA 1 cut(s) 721
GlaI GCGC 3 cut(s) 100, 721, 953
GluI GCNGC 7 cut(s) 551, 554, 945, 1446, 1626, 1985, 2114
GsaI CCCAGC 1 cut(s) 2077
GsuI CTGGAG 1 cut(s) 1064
HaeII RGCGCY 1 cut(s) 955
HaeIII GGCC 2 cut(s) 5, 431
HapII CCGG 4 cut(s) 760, 1137, 1700, 2246
HgaI GACGC 1 cut(s) 1840
HhaI GCGC 3 cut(s) 101, 722, 954
Hin1I GRCGYC 1 cut(s) 952
Hin6I GCGC 3 cut(s) 99, 720, 952
HinP1I GCGC 3 cut(s) 99, 720, 952
HincII GTYRAC 2 cut(s) 502, 2443
HindII GTYRAC 2 cut(s) 502, 2443
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 7 cut(s) 406, 1133, 1266, 1344, 1453, 2323, 2427
HpaI GTTAAC 1 cut(s) 502
HpaII CCGG 4 cut(s) 760, 1137, 1700, 2246
HphI GGTGA 3 cut(s) 97, 157, 214
Hpy166II GTNNAC 9 cut(s) 502, 619, 1123, 1421, 1477, 1611, 1795, 2152, 2443
Hpy188III TCNNGA 3 cut(s) 403, 656, 1043
Hpy8I GTNNAC 9 cut(s) 502, 619, 1123, 1421, 1477, 1611, 1795, 2152, 2443
Hpy99I CGWCG 1 cut(s) 1856
HpyAV CCTTC 6 cut(s) 529, 1184, 1252, 1285, 1634, 1754
HpyCH4III ACNGT 4 cut(s) 283, 353, 1160, 2270
HpyCH4IV ACGT 5 cut(s) 1125, 1409, 1707, 1956, 2067
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 1442, 1622, 1631, 1746, 1857, 1973, 2162
HpySE526I ACGT 5 cut(s) 1125, 1409, 1707, 1956, 2067
Hsp92I GRCGYC 1 cut(s) 952
HspAI GCGC 3 cut(s) 99, 720, 952
KasI GGCGCC 1 cut(s) 951
Ksp22I TGATCA 1 cut(s) 1317
KspAI GTTAAC 1 cut(s) 502
LguI GCTCTTC 2 cut(s) 1728, 2031
LmnI GCTCC 2 cut(s) 318, 323
Lsp1109I GCAGC 6 cut(s) 565, 931, 1457, 1637, 1996, 2125
LweI GCATC 6 cut(s) 373, 395, 687, 1365, 1563, 2111
MaeI CTAG 4 cut(s) 948, 1263, 1844, 2099
MaeII ACGT 5 cut(s) 1125, 1409, 1707, 1956, 2067
MaeIII GTNAC 7 cut(s) 182, 290, 343, 1025, 1405, 1708, 1957
MflI RGATCY 5 cut(s) 116, 450, 1148, 1281, 1812
MhlI GDGCHC 1 cut(s) 621
MluCI AATT 7 cut(s) 137, 252, 505, 796, 805, 926, 1877
Mly113I GGCGCC 1 cut(s) 952
MlyI GAGTC 1 cut(s) 1260
MmeI TCCRAC 2 cut(s) 572, 2058
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 5 cut(s) 72, 161, 501, 930, 1899
MslI CAYNNNNRTG 3 cut(s) 299, 626, 1676
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 4 cut(s) 760, 1137, 1700, 2246
MspR9I CCNGG 3 cut(s) 497, 1138, 2118
Mva1269I GAATGC 1 cut(s) 1210
MvaI CCWGG 2 cut(s) 497, 2118
MvnI CGCG 1 cut(s) 1851
MwoI GCNNNNNNNGC 8 cut(s) 203, 1442, 1622, 1631, 1746, 1857, 1973, 2162
NarI GGCGCC 1 cut(s) 952
NciI CCSGG 1 cut(s) 1138
NcoI CCATGG 3 cut(s) 454, 1635, 1741
NlaIV GGNNCC 3 cut(s) 494, 953, 1101
NmuCI GTSAC 3 cut(s) 182, 1405, 1708
NsbI TGCGCA 1 cut(s) 721
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 6 cut(s) 1119, 1513, 1537, 1634, 1894, 1941
NspV TTCGAA 1 cut(s) 524
PciI ACATGT 2 cut(s) 1509, 1533
PciSI GCTCTTC 2 cut(s) 1728, 2031
PcsI WCGNNNNNNNCGW 2 cut(s) 605, 1713
PctI GAATGC 1 cut(s) 1210
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 6 cut(s) 406, 1133, 1344, 1453, 2323, 2427
PflFI GACNNNGTC 1 cut(s) 1403
PfoI TCCNGGA 1 cut(s) 1136
PinAI ACCGGT 1 cut(s) 759
PkrI GCNGC 7 cut(s) 552, 555, 946, 1447, 1627, 1986, 2115
PleI GAGTC 1 cut(s) 1260
PluTI GGCGCC 1 cut(s) 955
PmaCI CACGTG 1 cut(s) 1126
PmlI CACGTG 1 cut(s) 1126
PpsI GAGTC 1 cut(s) 1260
Ppu21I YACGTR 1 cut(s) 1126
PpuMI RGGWCCY 1 cut(s) 492
PscI ACATGT 2 cut(s) 1509, 1533
PshBI ATTAAT 1 cut(s) 161
PsiI TTATAA 1 cut(s) 2300
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 2 cut(s) 495, 2116
PspCI CACGTG 1 cut(s) 1126
PspEI GGTNACC 1 cut(s) 1025
PspFI CCCAGC 1 cut(s) 2073
PspGI CCWGG 2 cut(s) 495, 2116
PspN4I GGNNCC 3 cut(s) 494, 953, 1101
PspPI GGNCC 2 cut(s) 492, 1099
PspPPI RGGWCCY 1 cut(s) 492
PstI CTGCAG 1 cut(s) 2346
PsuI RGATCY 5 cut(s) 116, 450, 1148, 1281, 1812
PsyI GACNNNGTC 1 cut(s) 1403
PvuII CAGCTG 1 cut(s) 556
RsaI GTAC 5 cut(s) 339, 1107, 1392, 1422, 2151
RsaNI GTAC 5 cut(s) 338, 1106, 1391, 1421, 2150
RseI CAYNNNNRTG 3 cut(s) 299, 626, 1676
SapI GCTCTTC 2 cut(s) 1728, 2031
SaqAI TTAA 5 cut(s) 72, 161, 501, 930, 1899
SatI GCNGC 7 cut(s) 551, 554, 945, 1446, 1626, 1985, 2114
Sau96I GGNCC 2 cut(s) 492, 1099
ScaI AGTACT 1 cut(s) 1107
SchI GAGTC 1 cut(s) 1260
ScrFI CCNGG 3 cut(s) 497, 1138, 2118
SduI GDGCHC 1 cut(s) 621
SfaNI GCATC 6 cut(s) 373, 395, 687, 1365, 1563, 2111
SfcI CTRYAG 2 cut(s) 2342, 2422
SfoI GGCGCC 1 cut(s) 953
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 2 cut(s) 492, 1099
SmiMI CAYNNNNRTG 3 cut(s) 299, 626, 1676
SmlI CTYRAG 2 cut(s) 28, 854
SmoI CTYRAG 2 cut(s) 28, 854
Sse9I AATT 7 cut(s) 137, 252, 505, 796, 805, 926, 1877
SsiI CCGC 2 cut(s) 550, 1548
SspDI GGCGCC 1 cut(s) 951
SspMI CTAG 4 cut(s) 948, 1263, 1844, 2099
StyD4I CCNGG 3 cut(s) 495, 1136, 2116
StyI CCWWGG 4 cut(s) 454, 1635, 1741, 1843
TaaI ACNGT 4 cut(s) 283, 353, 1160, 2270
TaiI ACGT 5 cut(s) 1128, 1412, 1710, 1959, 2070
TasI AATT 7 cut(s) 137, 252, 505, 796, 805, 926, 1877
TatI WGTACW 5 cut(s) 337, 1105, 1390, 1420, 2149
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 6 cut(s) 406, 1133, 1344, 1453, 2323, 2427
Tru1I TTAA 5 cut(s) 72, 161, 501, 930, 1899
Tru9I TTAA 5 cut(s) 72, 161, 501, 930, 1899
TscAI CASTG 4 cut(s) 370, 1423, 1444, 2275
TseFI GTSAC 3 cut(s) 182, 1405, 1708
TseI GCWGC 6 cut(s) 553, 944, 1445, 1625, 1984, 2113
Tsp45I GTSAC 3 cut(s) 182, 1405, 1708
TspGWI ACGGA 4 cut(s) 170, 475, 1358, 2460
TspRI CASTG 4 cut(s) 370, 1423, 1444, 2275
Tth111I GACNNNGTC 1 cut(s) 1403
VneI GTGCAC 1 cut(s) 617
VpaK11BI GGWCC 2 cut(s) 492, 1099
VspI ATTAAT 1 cut(s) 161
XapI RAATTY 5 cut(s) 137, 252, 796, 926, 1877
XceI RCATGY 6 cut(s) 1119, 1513, 1537, 1634, 1894, 1941
XcmI CCANNNNNNNNNTGG 1 cut(s) 1159
XmaJI CCTAGG 1 cut(s) 1843
XmiI GTMKAC 2 cut(s) 1476, 1794
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 4 cut(s) 948, 1263, 1844, 2099
ZrmI AGTACT 1 cut(s) 1107
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.