Prupe.1G464900_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
38792779 .. 38795870
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G464900.1

Sequence Viewer

Length: 2559 bp
ATGGCCGCAGCCCTTCCTGCCATTCTCTCAAGCCTGTCTCTCTCCACACAAAAACCAACCAAAAATAAAGTCTATAATCGAGTTCCAAGAACAAACTGCATCATCTCCTTGTTGAAATCCTGTTCAAACCTCAGAGAATTTGCACCGATCCATGCCCGTTTGGTCACCACAAACCTCATCCACGACCCCTTCACCGCCAGCCAGGTTCTCTGGTTCTTCATCACCATCAAAGACTTTGATTATGCTCGACTAGTTTTCAGTCAAACCCATCAGCCAGAGACCATTATTTGGAACACCCTTATGGAAAACAGACTCAAAAATGGTTCTTTTGGAGATGTGCTTTCAACTTACTATAACATGGTCACTCAAGGTGTGCCTCTGGATGCATCTACTTTCCACTTCTTGATTCATGCTTGTTCTAGACTTTTGGCCATTCAACAGGGGACTGAGATCCAAGGCCGGATTTTGAAAATTGGGTTGGGGGATAATATGTCTTTGATTAACAATTTGATGGGTTTGTATTCGAAATGTGGGAAATTGGATGAAGTGCGCAAAATGTTTGAGATATTACCTCAGAGAGATGTGATTAGTTGGAACACCATGATATCATGCAATGTCCATAAGGGAATGCTTTACGAGGCTTTGAATCTATTTCTGGAAATGCAGACTAATGAAGAAGTTGAACCAGATGAAATTACCATGCTGAGCTTAGTTTCGGCTTGTACGAAGCTCAGGGATTTGGAAATGGGGGAGAAGTTGCACCAGTATATTGAGGAAAATGAATTGGAGATTGGTGGGAATCTGTTGAATTGTGTGGTGGATATGTATGTTAAGTGTGGGAAAATGGATAAGGCACTTGAGCTTGTGGGTAGATGCAAGCCTGATATTGATGTTGTTTTGGGGACTATTATGGTTGGTGGGTATGTAAAATCTAATGAGATACATGCCGCTAGGTGCCTGTTTGACCAGATGACAGAGAGGAACTTGATTTCATGGATGACGATGATTTCAGGTTATGTTCAAGGAGGTTACTGTTATGAAAGTCTGGAGTTATTCAGGCAAATGAGAAAAACATATTTGAGCCTTGATGAGGTTCTTTTGGTTACGGTACTTTCAGCATGTGCTCATGTGGGAGATTGCAAGTTAGGCAAATCCGTTCACAGTCTGATTTTCAAATATGGAATGAATGTTGAAGGGTTTCTTGGGAATGCTCTGATAGACTTGTATGCCAAATGTGAAAAACTGGCTGAGGCTTGCTTAGTTTTTGAGCAGTTGCCTTGCAAGAGTGTTGTGTCTTGGAATTCGATGTTGGATGGGTTCTGCAGAAGTGGAGATATTAAGAAGGCTAGACTCTTCTTCAATGAGATTCCTGAGAAGGATGTGATTTCTTGGAACACCATGATCAACTGTTATTCCATATCTCATCGATTCGGAGAAGTGTTTGAGTTATTTCGTGCAATGCAGAGTTCAAATGTTCAGCCGAACAAGATCACATTAGTCAGTGTTCTGTCTTCCTGTGCTAGTGTTGCAGCCCTGAATTATGGCATTTGGGTGCATGTTTACATAAAAAAGAATCATATTGAGTTGGATATTATGTTGGGAACTGCTTTGATTGACATGTATGGAAAGTGTGGAAGCATTGAACAAGCCTATGAGATATTCTCGGATATGACTGAAAAAAATGTGTTTGTGTGGACCGCTATGATAGCAGCACGTGCCATGGAAGGGCAAGCCCAGAAAGCTATTGATCTCTACTCAGAAATGGAAGCTCTAGCAATAAAGCCAGATCATGTCACTTTCGTAGCTCTTCTATCTGCTTGTAGCCATGGAGGCTTAGTCAATGAAGGGTACACATACTTCAACAAGATGAGTAGTGTCTACAGTATTGTTCCTAAGATCCAGCACTATGGGTGTATGGTTGATCTCCTAGGTCGAGCCGGACGCTTAGACCAGGCAGTGAGGTTTATTGAAAGCATGCCTATCAAACCAGATATCTCTATATGGAGTTCCTTGTTGAGAGCATGTGGAAGCCATCAGAATCTAGAATTGGCAGAAAAAGTATTTCAAGAGCTCATAAAGATAGACCCCCTAAACGATGCTGCTTATGCTCTTATTTCAAATATATATGCAAAAGCTGGTAGGTGGGATGATGTGAGCTGGGCAAGAAAGAAGTTGCATGAACTAGGAGTGAGGAAGCAACCAGGATGTAGTCTAATAGAACAAAATGGAGCTGTGCATGAATTTACTGCTTGGGATTTCTCAAACCCTCAATCTGCTGAAATTTATGCTATGTTGGATGAGATAAAGCGTAGATTGCAAAAACAGGACCTAGTAGAAACATCATCTCATCATAGTGAAAGATTGGCTGTTGCTTTTGGTCTTTTAAACAACCCCCCAAGAACTCCTATCCGTGTAGTTAATAATCTGCAGATTTGTAGAGATTGCCATTCAGCCATGAAACTAATATCTCAGGCCTACAACAGAGAAATTGTTATCAGGGATAATTACAGATACCATCGGTTTGTAGATGGAAATTGCTCTTGTAAAGATTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

853

Amino Acids

96.42

Weight (kDa)

6.46

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024398)

Species Orthologous Gene IDs
malus_domestica MD08G1135000.v1.1
prunus_persica Prupe.1G464900_v2.0.a1
pyrus_communis pycom08g11390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 954
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 1878
AciI CCGC 4 cut(s) 6, 195, 948, 1698
AclWI GGATC 3 cut(s) 142, 445, 1891
AcoI YGGCCR 2 cut(s) 3, 429
AcsI RAATTY 4 cut(s) 137, 1300, 2240, 2280
AcvI CACGTG 1 cut(s) 1715
AfaI GTAC 3 cut(s) 724, 1110, 1850
AfiI CCNNNNNNNGG 3 cut(s) 288, 1090, 1725
AflIII ACRYGT 1 cut(s) 1617
AhlI ACTAGT 1 cut(s) 250
AjnI CCWGG 3 cut(s) 201, 1950, 2200
Alw21I GWGCWC 2 cut(s) 1126, 2073
Alw26I GTCTC 2 cut(s) 42, 272
AlwI GGATC 3 cut(s) 142, 445, 1891
AoxI GGCC 4 cut(s) 3, 429, 457, 2472
ApeKI GCWGC 4 cut(s) 8, 1529, 1709, 2099
ApoI RAATTY 4 cut(s) 137, 1300, 2240, 2280
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
Asp700I GAANNNNTTC 1 cut(s) 1197
AspA2I CCTAGG 1 cut(s) 1927
AspLEI GCGC 1 cut(s) 552
AspS9I GGNCC 2 cut(s) 1695, 2326
AsuHPI GGTGA 3 cut(s) 157, 184, 214
AsuII TTCGAA 1 cut(s) 524
AvaII GGWCC 2 cut(s) 1695, 2326
AvrII CCTAGG 1 cut(s) 1927
BalI TGGCCA 1 cut(s) 431
BanI GGYRCC 1 cut(s) 954
BanII GRGCYC 1 cut(s) 2073
BarI GAAGNNNNNNTAC 2 cut(s) 1841, 1873
BbrPI CACGTG 1 cut(s) 1715
BbsI GAAGAC 1 cut(s) 1503
Bbv12I GWGCWC 2 cut(s) 1126, 2073
BbvCI CCTCAGC 1 cut(s) 1248
BbvI GCAGC 4 cut(s) 20, 1541, 1721, 2086
BccI CCATC 7 cut(s) 233, 276, 505, 1307, 2040, 2522, 2523
BciT130I CCWGG 3 cut(s) 203, 1952, 2202
BclI TGATCA 1 cut(s) 1401
BcoDI GTCTC 2 cut(s) 42, 272
BcuI ACTAGT 1 cut(s) 250
BfmI CTRYAG 3 cut(s) 1321, 1879, 2426
BglI GCCNNNNNGGC 1 cut(s) 1830
BisI GCNGC 6 cut(s) 6, 9, 948, 1530, 1710, 2100
BlnI CCTAGG 1 cut(s) 1927
BlpI GCTNAGC 1 cut(s) 704
BlsI GCNGC 6 cut(s) 7, 10, 949, 1531, 1711, 2101
Bme1390I CCNGG 3 cut(s) 203, 1952, 2202
Bme18I GGWCC 2 cut(s) 1695, 2326
BmgT120I GGNCC 2 cut(s) 1695, 2326
BmiI GGNNCC 1 cut(s) 956
BmrFI CCNGG 3 cut(s) 203, 1952, 2202
BmsI GCATC 5 cut(s) 108, 373, 395, 863, 2086
BpiI GAAGAC 1 cut(s) 1503
BplI GAGNNNNNCTC 2 cut(s) 1646, 1678
BpmI CTGGAG 1 cut(s) 1067
Bpu10I CCTNAGC 2 cut(s) 731, 1248
Bpu1102I GCTNAGC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 524
BpuEI CTTGAG 3 cut(s) 13, 351, 878
Bsa29I ATCGAT 1 cut(s) 1426
BsaAI YACGTR 1 cut(s) 1715
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 4 cut(s) 454, 1719, 1825, 1927
BsaXI ACNNNNNCTCC 2 cut(s) 1821, 1851
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 1090, 1725
Bse1I ACTGG 2 cut(s) 763, 1248
Bse3DI GCAATG 2 cut(s) 619, 1464
BseBI CCWGG 3 cut(s) 203, 1952, 2202
BseCI ATCGAT 1 cut(s) 1426
BseDI CCNNGG 4 cut(s) 454, 1719, 1825, 1927
BseGI GGATG 9 cut(s) 177, 388, 547, 1002, 1318, 1384, 2152, 2210, 2302
BseLI CCNNNNNNNGG 3 cut(s) 288, 1090, 1725
BseMI GCAATG 2 cut(s) 619, 1464
BseMII CTCAG 9 cut(s) 145, 438, 587, 695, 745, 1239, 1362, 1770, 2483
BseNI ACTGG 2 cut(s) 763, 1248
BseXI GCAGC 4 cut(s) 20, 1541, 1721, 2086
BseYI CCCAGC 1 cut(s) 2157
BshFI GGCC 4 cut(s) 5, 431, 459, 2474
BshNI GGYRCC 1 cut(s) 954
BshVI ATCGAT 1 cut(s) 1426
BsiHKAI GWGCWC 2 cut(s) 1126, 2073
BsiSI CCGG 2 cut(s) 460, 1938
BslFI GGGAC 2 cut(s) 457, 916
BslI CCNNNNNNNGG 3 cut(s) 288, 1090, 1725
BsmAI GTCTC 2 cut(s) 42, 272
BsmFI GGGAC 2 cut(s) 457, 916
BsmI GAATGC 2 cut(s) 633, 1213
BsnI GGCC 4 cut(s) 5, 431, 459, 2474
Bso31I GGTCTC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 1126, 2073
Bsp143I GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
Bsp1720I GCTNAGC 1 cut(s) 704
Bsp19I CCATGG 2 cut(s) 1719, 1825
BspACI CCGC 4 cut(s) 6, 195, 948, 1698
BspANI GGCC 4 cut(s) 5, 431, 459, 2474
BspCNI CTCAG 9 cut(s) 144, 439, 586, 696, 744, 1240, 1363, 1769, 2482
BspDI ATCGAT 1 cut(s) 1426
BspLI GGNNCC 1 cut(s) 956
BspMAI CTGCAG 2 cut(s) 1325, 2430
BspPI GGATC 3 cut(s) 142, 445, 1891
BspQI GCTCTTC 1 cut(s) 1812
BspT104I TTCGAA 1 cut(s) 524
BspT107I GGYRCC 1 cut(s) 954
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 619, 1464
BsrI ACTGG 2 cut(s) 763, 1248
BssECI CCNNGG 4 cut(s) 454, 1719, 1825, 1927
BssMI GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
BssT1I CCWWGG 4 cut(s) 454, 1719, 1825, 1927
Bst2UI CCWGG 3 cut(s) 203, 1952, 2202
Bst4CI ACNGT 5 cut(s) 1034, 1108, 1163, 1409, 1883
Bst6I CTCTTC 2 cut(s) 1358, 1812
BstAPI GCANNNNNTGC 1 cut(s) 1715
BstBAI YACGTR 1 cut(s) 1715
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 5 cut(s) 199, 878, 1255, 1731, 1976
BstDSI CCRYGG 2 cut(s) 1719, 1825
BstEII GGTNACC 1 cut(s) 163
BstENI CCTNNNNNAGG 1 cut(s) 1088
BstF5I GGATG 9 cut(s) 177, 388, 547, 1002, 1318, 1384, 2152, 2210, 2302
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 8 cut(s) 150, 453, 1404, 1491, 1750, 1789, 1899, 1924
BstMAI GTCTC 2 cut(s) 42, 272
BstMBI GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
BstMWI GCNNNNNNNGC 9 cut(s) 17, 1146, 1526, 1706, 1715, 1739, 1830, 2105, 2314
BstNI CCWGG 3 cut(s) 203, 1952, 2202
BstNSI RCATGY 6 cut(s) 947, 1122, 1559, 1621, 1978, 2025
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 3 cut(s) 201, 1950, 2200
BstSFI CTRYAG 3 cut(s) 1321, 1879, 2426
BstV1I GCAGC 4 cut(s) 20, 1541, 1721, 2086
BstV2I GAAGAC 1 cut(s) 1503
BstX2I RGATCY 2 cut(s) 450, 1896
BstXI CCANNNNNNTGG 1 cut(s) 1907
BstYI RGATCY 2 cut(s) 450, 1896
Bsu15I ATCGAT 1 cut(s) 1426
BsuRI GGCC 4 cut(s) 5, 431, 459, 2474
BsuTUI ATCGAT 1 cut(s) 1426
BtgI CCRYGG 2 cut(s) 1719, 1825
BtsCI GGATG 9 cut(s) 177, 388, 547, 1002, 1318, 1384, 2152, 2210, 2302
BtsI GCAGTG 1 cut(s) 1962
BtsIMutI CAGTG 2 cut(s) 1507, 1962
Cac8I GCNNGC 5 cut(s) 199, 878, 1255, 1731, 1976
CfoI GCGC 1 cut(s) 552
Cfr13I GGNCC 2 cut(s) 1695, 2326
ClaI ATCGAT 1 cut(s) 1426
CseI GACGC 1 cut(s) 1950
Csp6I GTAC 3 cut(s) 723, 1109, 1849
CviQI GTAC 3 cut(s) 723, 1109, 1849
DpnI GATC 8 cut(s) 149, 452, 1403, 1490, 1749, 1788, 1898, 1923
DpnII GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
DraI TTTAAA 1 cut(s) 2385
EaeI YGGCCR 2 cut(s) 3, 429
Eam1104I CTCTTC 2 cut(s) 1358, 1812
EarI CTCTTC 2 cut(s) 1358, 1812
Ecl136II GAGCTC 1 cut(s) 2071
Eco130I CCWWGG 4 cut(s) 454, 1719, 1825, 1927
Eco147I AGGCCT 1 cut(s) 2474
Eco24I GRGCYC 1 cut(s) 2073
Eco31I GGTCTC 1 cut(s) 272
Eco32I GATATC 2 cut(s) 606, 1993
Eco47I GGWCC 2 cut(s) 1695, 2326
Eco53kI GAGCTC 1 cut(s) 2071
Eco72I CACGTG 1 cut(s) 1715
Eco91I GGTNACC 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 2071
EcoNI CCTNNNNNAGG 1 cut(s) 1088
EcoO109I RGGNCCY 1 cut(s) 2326
EcoO65I GGTNACC 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 1300
EcoRII CCWGG 3 cut(s) 201, 1950, 2200
EcoRV GATATC 2 cut(s) 606, 1993
EcoT14I CCWWGG 4 cut(s) 454, 1719, 1825, 1927
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 2073
ErhI CCWWGG 4 cut(s) 454, 1719, 1825, 1927
FalI AAGNNNNNCTT 2 cut(s) 1185, 1217
FaqI GGGAC 2 cut(s) 457, 916
FbaI TGATCA 1 cut(s) 1401
FblI GTMKAC 1 cut(s) 1878
Fnu4HI GCNGC 6 cut(s) 6, 9, 948, 1530, 1710, 2100
FokI GGATG 9 cut(s) 164, 395, 554, 1009, 1325, 1391, 2159, 2217, 2309
FriOI GRGCYC 1 cut(s) 2073
Fsp4HI GCNGC 6 cut(s) 6, 9, 948, 1530, 1710, 2100
FspI TGCGCA 1 cut(s) 551
GlaI GCGC 1 cut(s) 551
GluI GCNGC 6 cut(s) 6, 9, 948, 1530, 1710, 2100
GsaI CCCAGC 1 cut(s) 2161
GsuI CTGGAG 1 cut(s) 1067
HaeIII GGCC 4 cut(s) 5, 431, 459, 2474
HapII CCGG 2 cut(s) 460, 1938
HgaI GACGC 1 cut(s) 1950
HhaI GCGC 1 cut(s) 552
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HinfI GANTC 9 cut(s) 312, 406, 646, 799, 1350, 1366, 1428, 1573, 2038
HpaII CCGG 2 cut(s) 460, 1938
HphI GGTGA 3 cut(s) 157, 184, 214
Hpy166II GTNNAC 5 cut(s) 1159, 1561, 1695, 1851, 1879
Hpy188I TCNGA 8 cut(s) 134, 576, 1167, 1215, 1433, 1666, 1759, 2037
Hpy188III TCNNGA 8 cut(s) 380, 403, 420, 656, 1046, 1370, 2042, 2066
Hpy8I GTNNAC 5 cut(s) 1159, 1561, 1695, 1851, 1879
HpyAV CCTTC 7 cut(s) 23, 199, 1187, 1336, 1369, 1718, 1838
HpyCH4III ACNGT 5 cut(s) 1034, 1108, 1163, 1409, 1883
HpyCH4IV ACGT 1 cut(s) 1714
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 1146, 1526, 1706, 1715, 1739, 1830, 2105, 2314
HpySE526I ACGT 1 cut(s) 1714
HspAI GCGC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 1401
Kzo9I GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
LguI GCTCTTC 1 cut(s) 1812
LmnI GCTCC 1 cut(s) 2228
Lsp1109I GCAGC 4 cut(s) 20, 1541, 1721, 2086
LweI GCATC 5 cut(s) 108, 373, 395, 863, 2086
MaeII ACGT 1 cut(s) 1714
MaeIII GTNAC 5 cut(s) 163, 361, 1028, 1102, 1792
MalI GATC 8 cut(s) 149, 452, 1403, 1490, 1749, 1788, 1898, 1923
MboI GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
MboII GAAGA 6 cut(s) 208, 686, 1345, 1348, 1503, 1799
MflI RGATCY 2 cut(s) 450, 1896
MhlI GDGCHC 2 cut(s) 1126, 2073
MlsI TGGCCA 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 2 cut(s) 306, 1344
MmeI TCCRAC 4 cut(s) 572, 1290, 1566, 2274
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 1197
MscI TGGCCA 1 cut(s) 431
MseI TTAA 5 cut(s) 501, 831, 1338, 2384, 2418
MslI CAYNNNNRTG 3 cut(s) 299, 1550, 2352
Msp20I TGGCCA 1 cut(s) 431
MspI CCGG 2 cut(s) 460, 1938
MspR9I CCNGG 3 cut(s) 203, 1952, 2202
Mva1269I GAATGC 2 cut(s) 633, 1213
MvaI CCWGG 3 cut(s) 203, 1952, 2202
MwoI GCNNNNNNNGC 9 cut(s) 17, 1146, 1526, 1706, 1715, 1739, 1830, 2105, 2314
NcoI CCATGG 2 cut(s) 1719, 1825
NdeII GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
NlaIV GGNNCC 1 cut(s) 956
NmuCI GTSAC 3 cut(s) 163, 361, 1792
NsbI TGCGCA 1 cut(s) 551
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 6 cut(s) 947, 1122, 1559, 1621, 1978, 2025
NspV TTCGAA 1 cut(s) 524
PaeI GCATGC 1 cut(s) 1978
PceI AGGCCT 1 cut(s) 2474
PciI ACATGT 1 cut(s) 1617
PciSI GCTCTTC 1 cut(s) 1812
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PctI GAATGC 2 cut(s) 633, 1213
PdmI GAANNNNTTC 1 cut(s) 1197
PfeI GAWTC 7 cut(s) 406, 646, 799, 1366, 1428, 1573, 2038
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 6 cut(s) 7, 10, 949, 1531, 1711, 2101
PleI GAGTC 2 cut(s) 306, 1344
PmaCI CACGTG 1 cut(s) 1715
PmlI CACGTG 1 cut(s) 1715
PpsI GAGTC 2 cut(s) 306, 1344
Ppu21I YACGTR 1 cut(s) 1715
PpuMI RGGWCCY 1 cut(s) 2326
PscI ACATGT 1 cut(s) 1617
Psp124BI GAGCTC 1 cut(s) 2073
Psp5II RGGWCCY 1 cut(s) 2326
Psp6I CCWGG 3 cut(s) 201, 1950, 2200
PspCI CACGTG 1 cut(s) 1715
PspEI GGTNACC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 2157
PspGI CCWGG 3 cut(s) 201, 1950, 2200
PspN4I GGNNCC 1 cut(s) 956
PspPI GGNCC 2 cut(s) 1695, 2326
PspPPI RGGWCCY 1 cut(s) 2326
PstI CTGCAG 2 cut(s) 1325, 2430
PsuI RGATCY 2 cut(s) 450, 1896
RsaI GTAC 3 cut(s) 724, 1110, 1850
RsaNI GTAC 3 cut(s) 723, 1109, 1849
RseI CAYNNNNRTG 3 cut(s) 299, 1550, 2352
SacI GAGCTC 1 cut(s) 2073
SapI GCTCTTC 1 cut(s) 1812
SaqAI TTAA 5 cut(s) 501, 831, 1338, 2384, 2418
SatI GCNGC 6 cut(s) 6, 9, 948, 1530, 1710, 2100
Sau3AI GATC 8 cut(s) 147, 450, 1401, 1488, 1747, 1786, 1896, 1921
Sau96I GGNCC 2 cut(s) 1695, 2326
SchI GAGTC 2 cut(s) 306, 1344
ScrFI CCNGG 3 cut(s) 203, 1952, 2202
SduI GDGCHC 2 cut(s) 1126, 2073
SfaNI GCATC 5 cut(s) 108, 373, 395, 863, 2086
SfcI CTRYAG 3 cut(s) 1321, 1879, 2426
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 2 cut(s) 1695, 2326
SmiMI CAYNNNNRTG 3 cut(s) 299, 1550, 2352
SmlI CTYRAG 3 cut(s) 28, 366, 857
SmoI CTYRAG 3 cut(s) 28, 366, 857
SpeI ACTAGT 1 cut(s) 250
SphI GCATGC 1 cut(s) 1978
SseBI AGGCCT 1 cut(s) 2474
SsiI CCGC 4 cut(s) 6, 195, 948, 1698
SstI GAGCTC 1 cut(s) 2073
StuI AGGCCT 1 cut(s) 2474
StyD4I CCNGG 3 cut(s) 201, 1950, 2200
StyI CCWWGG 4 cut(s) 454, 1719, 1825, 1927
TaaI ACNGT 5 cut(s) 1034, 1108, 1163, 1409, 1883
TaiI ACGT 1 cut(s) 1717
TaqI TCGA 6 cut(s) 79, 247, 524, 1304, 1426, 1933
TauI GCSGC 2 cut(s) 8, 950
TfiI GAWTC 7 cut(s) 406, 646, 799, 1366, 1428, 1573, 2038
Tru1I TTAA 5 cut(s) 501, 831, 1338, 2384, 2418
Tru9I TTAA 5 cut(s) 501, 831, 1338, 2384, 2418
TscAI CASTG 2 cut(s) 1507, 1962
TseFI GTSAC 3 cut(s) 163, 361, 1792
TseI GCWGC 4 cut(s) 8, 1529, 1709, 2099
Tsp45I GTSAC 3 cut(s) 163, 361, 1792
TspGWI ACGGA 2 cut(s) 1144, 2399
TspRI CASTG 2 cut(s) 1507, 1962
Van91I CCANNNNNTGG 1 cut(s) 288
VpaK11BI GGWCC 2 cut(s) 1695, 2326
XagI CCTNNNNNAGG 1 cut(s) 1088
XapI RAATTY 4 cut(s) 137, 1300, 2240, 2280
XbaI TCTAGA 2 cut(s) 419, 2041
XceI RCATGY 6 cut(s) 947, 1122, 1559, 1621, 1978, 2025
XmaJI CCTAGG 1 cut(s) 1927
XmiI GTMKAC 1 cut(s) 1878
XmnI GAANNNNTTC 1 cut(s) 1197
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.