MD08G1184600.v1.1

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0022387
Physical Location & Seq
Reverse (-)
23012632 .. 23014108
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1184600.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGAATCGGACCGAGTCAATAAGGTTCGTAAATTGCTCATGATGTCCACCAACAAGCGTATCCCTTTGAGTAAAATCTACCATTGCAGGTCGATTTTTGGAATTCCTGAAGATTTTAGGGACAGGGTTTCGAAATACCCTAATTTTTTCAGGATTGTGGTTGAGGAGGATGGGAAGAGAGTGCTTGAATTGGTGAATTGGGATCCGTTGATGGCGGTGAGCGCGTTGGAGAGGGAGTTTATGGTGGATGAGGAGAGAGTGAAGAGGGCTTTTCGGTTTCCAGTGAAGCATGGGAAGGATTTGGGCCTGGAGATAGAGGATGAGAGGAAATTGAACATGTTGAATTCTCCTCCGTTGGTTTCGCCTTATTCGGATGGATCAAGATTGGACCTTTGGAGTCTGGAAGCGGAGAAGTACCGGGTGGGAGTGTTGCATGAGTTTTTGAGCTTGACATTGGAGAAGAGGGCTTCCATACACCATGTTGTGGAGTTCAAGGAGGAGTTTAGCTTGACCAAGCATACTTATCAGATGCTGTTGAAGCAGCCCAGAACTTTTTATCTGGCCGGGACGCAGATGAACTGGGTTGTTTTCTTGAAAGATGCTTATGACCGAGACGGGGTTTTGATTGAGAAAGATCCGCAGGTGGTTTTCAATGAGAAGTTGTACAAGTATGCTGATATGAAGGAAAGGGATAGGGATTTATTGATCAATGGAGGTGATGAGAGGGTTTTAGGCAAATTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

249

Amino Acids

29.37

Weight (kDa)

7.04

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 1 - 229 5.8e-77 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022387)

Species Orthologous Gene IDs
malus_domestica MD08G1184600.v1.1
rosa_chinensis RchiOBHm_Chr7g0243921
rosa_multiflora Rmu_co8462763.1_g000001
rosa_samantha Rh7AG476800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 631
Acc36I ACCTGC 2 cut(s) 78, 631
AccB7I CCANNNNNTGG 1 cut(s) 484
AccII CGCG 1 cut(s) 224
AciI CCGC 3 cut(s) 215, 407, 638
AclWI GGATC 4 cut(s) 197, 210, 385, 629
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 3 cut(s) 102, 343, 737
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 2 cut(s) 416, 665
AfiI CCNNNNNNNGG 2 cut(s) 484, 616
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 7 cut(s) 188, 334, 343, 493, 538, 595, 652
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 2 cut(s) 447, 507
AluI AGCT 2 cut(s) 447, 507
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 4 cut(s) 197, 210, 385, 629
AlwNI CAGNNNCTG 1 cut(s) 532
AoxI GGCC 2 cut(s) 304, 561
ApeKI GCWGC 1 cut(s) 541
ApoI RAATTY 3 cut(s) 102, 343, 737
AspLEI GCGC 1 cut(s) 224
AspS9I GGNCC 3 cut(s) 10, 304, 388
AsuC2I CCSGG 2 cut(s) 419, 565
AsuHPI GGTGA 3 cut(s) 205, 229, 728
AsuII TTCGAA 1 cut(s) 131
AvaII GGWCC 2 cut(s) 10, 388
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
BamHI GGATCC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 553
BccI CCATC 3 cut(s) 164, 205, 368
BciT130I CCWGG 1 cut(s) 308
BciVI GTATCC 1 cut(s) 71
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 2 cut(s) 419, 565
BcoDI GTCTC 1 cut(s) 606
BfuAI ACCTGC 2 cut(s) 78, 631
BfuI GTATCC 1 cut(s) 71
BisI GCNGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 543
Bme1390I CCNGG 3 cut(s) 308, 419, 565
Bme18I GGWCC 2 cut(s) 10, 388
BmgT120I GGNCC 3 cut(s) 10, 304, 388
BmiI GGNNCC 1 cut(s) 204
BmrFI CCNGG 3 cut(s) 308, 419, 565
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 2 cut(s) 519, 589
BmuI ACTGGG 1 cut(s) 589
BpmI CTGGAG 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 419, 565
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 616
Bse1I ACTGG 2 cut(s) 281, 584
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 4 cut(s) 175, 253, 325, 379
BseLI CCNNNNNNNGG 2 cut(s) 484, 616
BseMI GCAATG 1 cut(s) 82
BseNI ACTGG 2 cut(s) 281, 584
BseRI GAGGAG 4 cut(s) 179, 266, 339, 512
BseXI GCAGC 1 cut(s) 553
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 2 cut(s) 306, 563
BsiSI CCGG 2 cut(s) 418, 564
BslFI GGGAC 2 cut(s) 134, 580
BslI CCNNNNNNNGG 2 cut(s) 484, 616
BsmAI GTCTC 1 cut(s) 606
BsmBI CGTCTC 1 cut(s) 606
BsmFI GGGAC 2 cut(s) 134, 580
BsnI GGCC 2 cut(s) 306, 563
Bsp119I TTCGAA 1 cut(s) 131
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 4 cut(s) 202, 377, 634, 705
BspACI CCGC 3 cut(s) 215, 407, 638
BspANI GGCC 2 cut(s) 306, 563
BspFNI CGCG 1 cut(s) 224
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 204
BspMI ACCTGC 2 cut(s) 78, 631
BspPI GGATC 4 cut(s) 197, 210, 385, 629
BspT104I TTCGAA 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 2 cut(s) 281, 584
BssMI GATC 4 cut(s) 202, 377, 634, 705
Bst2UI CCWGG 1 cut(s) 308
Bst6I CTCTTC 3 cut(s) 170, 257, 455
BstAUI TGTACA 1 cut(s) 663
BstBI TTCGAA 1 cut(s) 131
BstF5I GGATG 4 cut(s) 175, 253, 325, 379
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 224
BstKTI GATC 4 cut(s) 205, 380, 637, 708
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 4 cut(s) 202, 377, 634, 705
BstMWI GCNNNNNNNGC 2 cut(s) 221, 538
BstNI CCWGG 1 cut(s) 308
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 3 cut(s) 306, 417, 563
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 553
BstX2I RGATCY 2 cut(s) 202, 634
BstYI RGATCY 2 cut(s) 202, 634
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 306, 563
BtsCI GGATG 4 cut(s) 175, 253, 325, 379
BtsIMutI CAGTG 1 cut(s) 288
BveI ACCTGC 2 cut(s) 78, 631
CaiI CAGNNNCTG 1 cut(s) 532
CciI TCATGA 1 cut(s) 39
CfoI GCGC 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 10, 304, 388
CpoI CGGWCCG 1 cut(s) 10
CseI GACGC 1 cut(s) 577
Csp6I GTAC 2 cut(s) 415, 664
CspI CGGWCCG 1 cut(s) 10
CviAII CATG 5 cut(s) 40, 290, 337, 434, 479
CviJI RGCY 7 cut(s) 269, 306, 447, 467, 507, 544, 563
CviKI_1 RGCY 7 cut(s) 269, 306, 447, 467, 507, 544, 563
CviQI GTAC 2 cut(s) 415, 664
DpnI GATC 4 cut(s) 204, 379, 636, 707
DpnII GATC 4 cut(s) 202, 377, 634, 705
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 3 cut(s) 170, 257, 455
EarI CTCTTC 3 cut(s) 170, 257, 455
Eco47I GGWCC 2 cut(s) 10, 388
Eco57I CTGAAG 1 cut(s) 129
EcoRI GAATTC 2 cut(s) 102, 343
EcoRII CCWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 606
FaeI CATG 5 cut(s) 43, 293, 340, 437, 482
FaqI GGGAC 2 cut(s) 134, 580
FatI CATG 5 cut(s) 39, 289, 336, 433, 478
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 1 cut(s) 542
FokI GGATG 4 cut(s) 182, 260, 332, 386
Fsp4HI GCNGC 1 cut(s) 542
GlaI GCGC 1 cut(s) 223
GluI GCNGC 1 cut(s) 542
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 306, 563
HapII CCGG 2 cut(s) 418, 564
HgaI GACGC 1 cut(s) 577
HhaI GCGC 1 cut(s) 224
Hin1II CATG 5 cut(s) 43, 293, 340, 437, 482
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HinfI GANTC 3 cut(s) 5, 15, 397
HpaII CCGG 2 cut(s) 418, 564
HphI GGTGA 3 cut(s) 205, 229, 728
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 3 cut(s) 10, 373, 528
Hpy188III TCNNGA 6 cut(s) 40, 107, 151, 381, 401, 592
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 289, 676
HpyCH4V TGCA 2 cut(s) 87, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 538
Hsp92II CATG 5 cut(s) 43, 293, 340, 437, 482
HspAI GCGC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 4 cut(s) 202, 377, 634, 705
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 2 cut(s) 519, 589
MalI GATC 4 cut(s) 204, 379, 636, 707
MboI GATC 4 cut(s) 202, 377, 634, 705
MboII GAAGA 4 cut(s) 122, 187, 274, 472
MflI RGATCY 2 cut(s) 202, 634
MluCI AATT 8 cut(s) 32, 102, 142, 188, 196, 329, 343, 737
MlyI GAGTC 2 cut(s) 24, 406
MmeI TCCRAC 1 cut(s) 207
MspI CCGG 2 cut(s) 418, 564
MspR9I CCNGG 3 cut(s) 308, 419, 565
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 221, 538
NciI CCSGG 2 cut(s) 419, 565
NdeII GATC 4 cut(s) 202, 377, 634, 705
NlaIII CATG 5 cut(s) 43, 293, 340, 437, 482
NlaIV GGNNCC 1 cut(s) 204
NspI RCATGY 1 cut(s) 340
NspV TTCGAA 1 cut(s) 131
PagI TCATGA 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 631
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 484
PkrI GCNGC 1 cut(s) 543
PleI GAGTC 2 cut(s) 23, 405
PpsI GAGTC 2 cut(s) 23, 405
PscI ACATGT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 3 cut(s) 10, 304, 388
PstNI CAGNNNCTG 1 cut(s) 532
PsuI RGATCY 2 cut(s) 202, 634
PsyI GACNNNGTC 1 cut(s) 14
RsaI GTAC 2 cut(s) 416, 665
RsaNI GTAC 2 cut(s) 415, 664
Rsr2I CGGWCCG 1 cut(s) 10
RsrII CGGWCCG 1 cut(s) 10
SatI GCNGC 1 cut(s) 542
Sau3AI GATC 4 cut(s) 202, 377, 634, 705
Sau96I GGNCC 3 cut(s) 10, 304, 388
SchI GAGTC 2 cut(s) 24, 406
ScrFI CCNGG 3 cut(s) 308, 419, 565
SetI ASST 7 cut(s) 27, 92, 393, 449, 509, 645, 718
SfaNI GCATC 2 cut(s) 519, 589
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 2 cut(s) 10, 388
Sse9I AATT 8 cut(s) 32, 102, 142, 188, 196, 329, 343, 737
SsiI CCGC 3 cut(s) 215, 407, 638
StyD4I CCNGG 3 cut(s) 306, 417, 563
TaqI TCGA 2 cut(s) 92, 131
TaqII GACCGA 2 cut(s) 27, 624
TasI AATT 8 cut(s) 32, 102, 142, 188, 196, 329, 343, 737
TatI WGTACW 1 cut(s) 663
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 1 cut(s) 288
TseI GCWGC 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 590, 695
TspGWI ACGGA 2 cut(s) 195, 342
TspRI CASTG 1 cut(s) 288
Tth111I GACNNNGTC 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 484
VpaK11BI GGWCC 2 cut(s) 10, 388
XapI RAATTY 3 cut(s) 102, 343, 737
XceI RCATGY 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.