Rh7AG476800

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0022387
Physical Location & Seq
Forward (+)
66776035 .. 66776823
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG476800.1

Sequence Viewer

Length: 789 bp
ATGGAAGGTTTGATGGAAGAGGAGGTGGCGTTGATGGAGGCGATGGAAGGGGACAGAGTCAACAAGGTGAGGAAGTTACTGATGATGTCAGCGAATAAGCGGATTCCGTTGAGCAAGATTTATCACTGCAGGTTGTTGTTTGGGATTCCTGAAGATTTTCGGGACAGGGTGGCGAAGTATCCTGATTATTTCAGGGTTGTGGTTGAGGGTGATGGGAAGAGAGTGCTGGAATTGGTGAAATGGGATCCTTTGTTAGCAGTTAGTAGTTTAGAGAGGGAGTTTGTGGTGAATGAGGATAAGGTTAAGAGGGCTTTTAGGTTTCCTGTGAAGCATGGGAAAGATTTAGGTTTGGATGATGAGGATTCGAGGAAGTTGAACTTGTTGAATTCGCTTCCTTTGGTTTCGCCTTATTCAGATGGGTCGAGATTGGACCTGTGGACATTGGAAGCTGAGAAGTATAGGGTGGGAATTTTGCATGAGTTTTTGAGCTTGACATTGGAGAAGAGGGCTTCTATACACCACATTGTGGAGTTCAAGGAGGAGTTTAGTTTGACTAAGCACACTTACCAGATGCTGTTTAAGCAGCCCAGGACGTTTTATCTTGCCGGGACTGAGATGAACTGGGTTGTTTTCTTGAAAGATGCATATGACCAGAATGGGGTTTTGATTGAGAAGGATCCCCAAGTGGATTTCAATGAGAAGCTGTATAAGTATGCTGAAATGCAGGAAATGGAACCGGGTTATGATTCATCTCAGCAACTGATAAGAGGGAATACACAATGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

262

Amino Acids

30.72

Weight (kDa)

5.55

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 1 - 243 5.7e-81 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022387)

Species Orthologous Gene IDs
malus_domestica MD08G1184600.v1.1
rosa_chinensis RchiOBHm_Chr7g0243921
rosa_multiflora Rmu_co8462763.1_g000001
rosa_samantha Rh7AG476800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AccB7I CCANNNNNTGG 1 cut(s) 526
AciI CCGC 1 cut(s) 100
AclWI GGATC 4 cut(s) 239, 252, 671, 684
AcsI RAATTY 2 cut(s) 385, 468
AcuI CTGAAG 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 526, 658
AgsI TTSAA 5 cut(s) 376, 385, 535, 637, 694
AjnI CCWGG 1 cut(s) 587
AluBI AGCT 3 cut(s) 449, 489, 703
AluI AGCT 3 cut(s) 449, 489, 703
AlwI GGATC 4 cut(s) 239, 252, 671, 684
AlwNI CAGNNNCTG 2 cut(s) 574, 760
ApeKI GCWGC 1 cut(s) 583
ApoI RAATTY 2 cut(s) 385, 468
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 430
AsuC2I CCSGG 2 cut(s) 607, 738
AsuHPI GGTGA 4 cut(s) 79, 221, 247, 298
AvaII GGWCC 1 cut(s) 430
BamHI GGATCC 2 cut(s) 244, 676
BbvI GCAGC 1 cut(s) 595
BccI CCATC 5 cut(s) 7, 28, 37, 206, 410
BciT130I CCWGG 1 cut(s) 589
BciVI GTATCC 1 cut(s) 189
BcnI CCSGG 2 cut(s) 607, 738
BfmI CTRYAG 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 120
BfuI GTATCC 1 cut(s) 189
BisI GCNGC 1 cut(s) 584
BlsI GCNGC 1 cut(s) 585
Bme1390I CCNGG 3 cut(s) 589, 607, 738
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 3 cut(s) 246, 678, 735
BmrFI CCNGG 3 cut(s) 589, 607, 738
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 2 cut(s) 561, 631
BmuI ACTGGG 1 cut(s) 631
BpuMI CCSGG 2 cut(s) 607, 738
BsaJI CCNNGG 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 658
Bse1I ACTGG 1 cut(s) 626
BseBI CCWGG 1 cut(s) 589
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 526, 658
BseMII CTCAG 3 cut(s) 441, 603, 767
BseNI ACTGG 1 cut(s) 626
BseRI GAGGAG 2 cut(s) 35, 554
BseXI GCAGC 1 cut(s) 595
BsiSI CCGG 2 cut(s) 606, 737
BslFI GGGAC 3 cut(s) 65, 176, 622
BslI CCNNNNNNNGG 2 cut(s) 526, 658
BsmFI GGGAC 3 cut(s) 65, 176, 622
Bsp143I GATC 2 cut(s) 244, 676
BspACI CCGC 1 cut(s) 100
BspCNI CTCAG 3 cut(s) 442, 604, 766
BspLI GGNNCC 3 cut(s) 246, 678, 735
BspMAI CTGCAG 1 cut(s) 131
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 4 cut(s) 239, 252, 671, 684
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 2 cut(s) 244, 676
Bst2UI CCWGG 1 cut(s) 589
Bst6I CTCTTC 3 cut(s) 12, 212, 497
BstDEI CTNAG 4 cut(s) 450, 555, 612, 753
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 2 cut(s) 247, 679
BstMBI GATC 2 cut(s) 244, 676
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 587, 605, 736
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 2 cut(s) 244, 676
BstYI RGATCY 2 cut(s) 244, 676
BsuI GTATCC 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 120
CaiI CAGNNNCTG 2 cut(s) 574, 760
Cfr13I GGNCC 1 cut(s) 430
CviAII CATG 2 cut(s) 332, 476
CviJI RGCY 6 cut(s) 311, 449, 489, 509, 586, 703
CviKI_1 RGCY 6 cut(s) 311, 449, 489, 509, 586, 703
DdeI CTNAG 4 cut(s) 450, 555, 612, 753
DpnI GATC 2 cut(s) 246, 678
DpnII GATC 2 cut(s) 244, 676
DraIII CACNNNGTG 1 cut(s) 526
Eam1104I CTCTTC 3 cut(s) 12, 212, 497
EarI CTCTTC 3 cut(s) 12, 212, 497
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 587
EcoT22I ATGCAT 1 cut(s) 646
FaeI CATG 2 cut(s) 335, 479
FaiI YATR 9 cut(s) 333, 459, 477, 515, 646, 648, 708, 714, 744
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 3 cut(s) 65, 176, 622
FatI CATG 2 cut(s) 331, 475
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 1 cut(s) 584
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 584
GluI GCNGC 1 cut(s) 584
HapII CCGG 2 cut(s) 606, 737
Hin1II CATG 2 cut(s) 335, 479
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 5 cut(s) 57, 103, 145, 362, 746
HpaII CCGG 2 cut(s) 606, 737
HphI GGTGA 4 cut(s) 79, 221, 247, 298
Hpy166II GTNNAC 2 cut(s) 61, 438
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 5 cut(s) 149, 161, 182, 423, 634
Hpy8I GTNNAC 2 cut(s) 61, 438
HpyAV CCTTC 2 cut(s) 41, 667
HpyCH4IV ACGT 1 cut(s) 593
HpyCH4V TGCA 4 cut(s) 129, 475, 644, 724
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 4 cut(s) 450, 555, 612, 753
HpySE526I ACGT 1 cut(s) 593
Hsp92II CATG 2 cut(s) 335, 479
Kzo9I GATC 2 cut(s) 244, 676
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 2 cut(s) 561, 631
MaeII ACGT 1 cut(s) 593
MaeIII GTNAC 1 cut(s) 75
MalI GATC 2 cut(s) 246, 678
MboI GATC 2 cut(s) 244, 676
MboII GAAGA 4 cut(s) 29, 164, 229, 514
MflI RGATCY 2 cut(s) 244, 676
MluCI AATT 3 cut(s) 230, 385, 468
MlyI GAGTC 1 cut(s) 66
Mph1103I ATGCAT 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 303, 579
MspI CCGG 2 cut(s) 606, 737
MspR9I CCNGG 3 cut(s) 589, 607, 738
MvaI CCWGG 1 cut(s) 589
MwoI GCNNNNNNNGC 1 cut(s) 580
NciI CCSGG 2 cut(s) 607, 738
NdeI CATATG 1 cut(s) 646
NdeII GATC 2 cut(s) 244, 676
NlaIII CATG 2 cut(s) 335, 479
NlaIV GGNNCC 3 cut(s) 246, 678, 735
NsiI ATGCAT 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 4 cut(s) 103, 145, 362, 746
PflFI GACNNNGTC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 1 cut(s) 585
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 587
PspGI CCWGG 1 cut(s) 587
PspN4I GGNNCC 3 cut(s) 246, 678, 735
PspPI GGNCC 1 cut(s) 430
PstI CTGCAG 1 cut(s) 131
PstNI CAGNNNCTG 2 cut(s) 574, 760
PsuI RGATCY 2 cut(s) 244, 676
PsyI GACNNNGTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 303, 579
SatI GCNGC 1 cut(s) 584
Sau3AI GATC 2 cut(s) 244, 676
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 3 cut(s) 589, 607, 738
SfaNI GCATC 2 cut(s) 561, 631
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 430
Sse9I AATT 3 cut(s) 230, 385, 468
SsiI CCGC 1 cut(s) 100
StyD4I CCNGG 3 cut(s) 587, 605, 736
TaiI ACGT 1 cut(s) 596
TaqI TCGA 2 cut(s) 365, 422
TasI AATT 3 cut(s) 230, 385, 468
TfiI GAWTC 4 cut(s) 103, 145, 362, 746
Tru1I TTAA 2 cut(s) 303, 579
Tru9I TTAA 2 cut(s) 303, 579
TscAI CASTG 1 cut(s) 131
TseI GCWGC 1 cut(s) 583
TspDTI ATGAA 2 cut(s) 632, 738
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 131
Tth111I GACNNNGTC 1 cut(s) 56
Van91I CCANNNNNTGG 1 cut(s) 526
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 2 cut(s) 385, 468
XmnI GAANNNNTTC 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.