Protein ROOT PRIMORDIUM DEFECTIVE
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1184600.v1.1 |
| rosa_chinensis | RchiOBHm_Chr7g0243921 |
| rosa_multiflora | Rmu_co8462763.1_g000001 |
| rosa_samantha | Rh7AG476800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 301 |
| AclWI | GGATC | 4 cut(s) | 14, 27, 446, 459 |
| AcsI | RAATTY | 2 cut(s) | 160, 243 |
| AdeI | CACNNNGTG | 1 cut(s) | 301 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 301, 433 |
| AgsI | TTSAA | 5 cut(s) | 151, 160, 310, 412, 469 |
| AjnI | CCWGG | 1 cut(s) | 362 |
| AluBI | AGCT | 3 cut(s) | 224, 264, 478 |
| AluI | AGCT | 3 cut(s) | 224, 264, 478 |
| AlwI | GGATC | 4 cut(s) | 14, 27, 446, 459 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 349, 535 |
| ApeKI | GCWGC | 1 cut(s) | 358 |
| ApoI | RAATTY | 2 cut(s) | 160, 243 |
| AspS9I | GGNCC | 1 cut(s) | 205 |
| AsuC2I | CCSGG | 2 cut(s) | 382, 513 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 205 |
| BamHI | GGATCC | 2 cut(s) | 19, 451 |
| BbvI | GCAGC | 1 cut(s) | 370 |
| BccI | CCATC | 1 cut(s) | 185 |
| BciT130I | CCWGG | 1 cut(s) | 364 |
| BcnI | CCSGG | 2 cut(s) | 382, 513 |
| BisI | GCNGC | 1 cut(s) | 359 |
| BlsI | GCNGC | 1 cut(s) | 360 |
| Bme1390I | CCNGG | 3 cut(s) | 364, 382, 513 |
| Bme18I | GGWCC | 1 cut(s) | 205 |
| BmgT120I | GGNCC | 1 cut(s) | 205 |
| BmiI | GGNNCC | 3 cut(s) | 21, 453, 510 |
| BmrFI | CCNGG | 3 cut(s) | 364, 382, 513 |
| BmrI | ACTGGG | 1 cut(s) | 406 |
| BmsI | GCATC | 2 cut(s) | 336, 406 |
| BmuI | ACTGGG | 1 cut(s) | 406 |
| BpuMI | CCSGG | 2 cut(s) | 382, 513 |
| BsaJI | CCNNGG | 1 cut(s) | 362 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 301, 433 |
| Bse1I | ACTGG | 1 cut(s) | 401 |
| BseBI | CCWGG | 1 cut(s) | 364 |
| BseDI | CCNNGG | 1 cut(s) | 362 |
| BseGI | GGATG | 2 cut(s) | 70, 133 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 301, 433 |
| BseMII | CTCAG | 3 cut(s) | 216, 378, 542 |
| BseNI | ACTGG | 1 cut(s) | 401 |
| BseRI | GAGGAG | 1 cut(s) | 329 |
| BseXI | GCAGC | 1 cut(s) | 370 |
| BsiSI | CCGG | 2 cut(s) | 381, 512 |
| BslFI | GGGAC | 1 cut(s) | 397 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 301, 433 |
| BsmFI | GGGAC | 1 cut(s) | 397 |
| Bsp143I | GATC | 2 cut(s) | 19, 451 |
| BspCNI | CTCAG | 3 cut(s) | 217, 379, 541 |
| BspLI | GGNNCC | 3 cut(s) | 21, 453, 510 |
| BspPI | GGATC | 4 cut(s) | 14, 27, 446, 459 |
| BsrI | ACTGG | 1 cut(s) | 401 |
| BssECI | CCNNGG | 1 cut(s) | 362 |
| BssMI | GATC | 2 cut(s) | 19, 451 |
| Bst2UI | CCWGG | 1 cut(s) | 364 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstDEI | CTNAG | 4 cut(s) | 225, 330, 387, 528 |
| BstF5I | GGATG | 2 cut(s) | 70, 133 |
| BstKTI | GATC | 2 cut(s) | 22, 454 |
| BstMBI | GATC | 2 cut(s) | 19, 451 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 355 |
| BstNI | CCWGG | 1 cut(s) | 364 |
| BstSCI | CCNGG | 3 cut(s) | 362, 380, 511 |
| BstV1I | GCAGC | 1 cut(s) | 370 |
| BstX2I | RGATCY | 2 cut(s) | 19, 451 |
| BstYI | RGATCY | 2 cut(s) | 19, 451 |
| BtsCI | GGATG | 2 cut(s) | 70, 133 |
| CaiI | CAGNNNCTG | 2 cut(s) | 349, 535 |
| Cfr13I | GGNCC | 1 cut(s) | 205 |
| CviAII | CATG | 2 cut(s) | 107, 251 |
| CviJI | RGCY | 6 cut(s) | 86, 224, 264, 284, 361, 478 |
| CviKI_1 | RGCY | 6 cut(s) | 86, 224, 264, 284, 361, 478 |
| DdeI | CTNAG | 4 cut(s) | 225, 330, 387, 528 |
| DpnI | GATC | 2 cut(s) | 21, 453 |
| DpnII | GATC | 2 cut(s) | 19, 451 |
| DraIII | CACNNNGTG | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Eco47I | GGWCC | 1 cut(s) | 205 |
| EcoRI | GAATTC | 2 cut(s) | 160, 243 |
| EcoRII | CCWGG | 1 cut(s) | 362 |
| EcoT22I | ATGCAT | 1 cut(s) | 421 |
| FaeI | CATG | 2 cut(s) | 110, 254 |
| FaiI | YATR | 9 cut(s) | 108, 234, 252, 290, 421, 423, 483, 489, 519 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 137, 169 |
| FaqI | GGGAC | 1 cut(s) | 397 |
| FatI | CATG | 2 cut(s) | 106, 250 |
| FauNDI | CATATG | 1 cut(s) | 421 |
| Fnu4HI | GCNGC | 1 cut(s) | 359 |
| FokI | GGATG | 2 cut(s) | 77, 140 |
| Fsp4HI | GCNGC | 1 cut(s) | 359 |
| GluI | GCNGC | 1 cut(s) | 359 |
| HapII | CCGG | 2 cut(s) | 381, 512 |
| Hin1II | CATG | 2 cut(s) | 110, 254 |
| HinfI | GANTC | 2 cut(s) | 137, 521 |
| HpaII | CCGG | 2 cut(s) | 381, 512 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 1 cut(s) | 190 |
| Hpy188III | TCNNGA | 2 cut(s) | 198, 409 |
| HpyAV | CCTTC | 1 cut(s) | 442 |
| HpyCH4IV | ACGT | 1 cut(s) | 368 |
| HpyCH4V | TGCA | 3 cut(s) | 250, 419, 499 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 355 |
| HpyF3I | CTNAG | 4 cut(s) | 225, 330, 387, 528 |
| HpySE526I | ACGT | 1 cut(s) | 368 |
| Hsp92II | CATG | 2 cut(s) | 110, 254 |
| Kzo9I | GATC | 2 cut(s) | 19, 451 |
| LpnPI | CCDG | 9 cut(s) | 111, 349, 356, 376, 382, 394, 440, 485, 525 |
| Lsp1109I | GCAGC | 1 cut(s) | 370 |
| LweI | GCATC | 2 cut(s) | 336, 406 |
| MaeII | ACGT | 1 cut(s) | 368 |
| MalI | GATC | 2 cut(s) | 21, 453 |
| MboI | GATC | 2 cut(s) | 19, 451 |
| MboII | GAAGA | 1 cut(s) | 289 |
| MflI | RGATCY | 2 cut(s) | 19, 451 |
| MluCI | AATT | 3 cut(s) | 5, 160, 243 |
| MnlI | CCTC | 8 cut(s) | 42, 61, 75, 127, 135, 273, 307, 536 |
| Mph1103I | ATGCAT | 1 cut(s) | 421 |
| MseI | TTAA | 2 cut(s) | 78, 354 |
| MspI | CCGG | 2 cut(s) | 381, 512 |
| MspR9I | CCNGG | 3 cut(s) | 364, 382, 513 |
| MvaI | CCWGG | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 355 |
| NciI | CCSGG | 2 cut(s) | 382, 513 |
| NdeI | CATATG | 1 cut(s) | 421 |
| NdeII | GATC | 2 cut(s) | 19, 451 |
| NlaIII | CATG | 2 cut(s) | 110, 254 |
| NlaIV | GGNNCC | 3 cut(s) | 21, 453, 510 |
| NsiI | ATGCAT | 1 cut(s) | 421 |
| PfeI | GAWTC | 2 cut(s) | 137, 521 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 301 |
| PkrI | GCNGC | 1 cut(s) | 360 |
| Psp6I | CCWGG | 1 cut(s) | 362 |
| PspGI | CCWGG | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 3 cut(s) | 21, 453, 510 |
| PspPI | GGNCC | 1 cut(s) | 205 |
| PstNI | CAGNNNCTG | 2 cut(s) | 349, 535 |
| PsuI | RGATCY | 2 cut(s) | 19, 451 |
| SaqAI | TTAA | 2 cut(s) | 78, 354 |
| SatI | GCNGC | 1 cut(s) | 359 |
| Sau3AI | GATC | 2 cut(s) | 19, 451 |
| Sau96I | GGNCC | 1 cut(s) | 205 |
| ScrFI | CCNGG | 3 cut(s) | 364, 382, 513 |
| SetI | ASST | 7 cut(s) | 78, 95, 210, 226, 266, 371, 480 |
| SfaNI | GCATC | 2 cut(s) | 336, 406 |
| SinI | GGWCC | 1 cut(s) | 205 |
| Sse9I | AATT | 3 cut(s) | 5, 160, 243 |
| StyD4I | CCNGG | 3 cut(s) | 362, 380, 511 |
| TaiI | ACGT | 1 cut(s) | 371 |
| TaqI | TCGA | 2 cut(s) | 140, 197 |
| TasI | AATT | 3 cut(s) | 5, 160, 243 |
| TfiI | GAWTC | 2 cut(s) | 137, 521 |
| Tru1I | TTAA | 2 cut(s) | 78, 354 |
| Tru9I | TTAA | 2 cut(s) | 78, 354 |
| TseI | GCWGC | 1 cut(s) | 358 |
| TspDTI | ATGAA | 2 cut(s) | 407, 513 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 301 |
| VpaK11BI | GGWCC | 1 cut(s) | 205 |
| XapI | RAATTY | 2 cut(s) | 160, 243 |
| Zsp2I | ATGCAT | 1 cut(s) | 421 |