MD08G1211100.v1.1

Amino acid permease

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
27475930 .. 27482713
6784 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1211100.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGCAGGGAAGTTTCAGAAGACTAGCATGTACATAGATCACAACCCTGCAATAATCGAAAACGGTGACTTTCGCAAGAACGTGGACGACGATGGCCGTCCTAAAAGAACTGGGACATGGATGACTGCTAGTGCACATATCATAACGGCTGTGATAGGGTCAGGGGTATTGTCTCTGGCATGGGCAATAGCTCAGTTGGGATGGGTTGCAGGGCCTGCTGTTCTCATGGCCTTTTCTTTCATCACCTACTTCACCGCCACTCTGCTCGCCGACTGTTACAGGTCTCCCGACCCTGTCAGCGGCAAAAGAAACTACACCTACATGGACGTTGTACGAGCCAATCTAGGAGGCAGAAAAGTGCAGCTGTGTGGATTGGCTCAGTATTCAAATCTGGTCGGTGTTACCATCGGTTACACAATCACTGCATCCATCAGCATGGTGGCGGTGAAGAGGTCGAATTGTTTTCACAAGCATGGCCATCATGTGAAGTGTCACACATCAAATAACCCTTTTATGATAATCTTTGCTTGCATCCAACTCTTTCTCAGCCAAATACAAAACTTTCACAAGCTCTGGTGGCTCTCAATAGTTGCAGCCATCATGTCCTTTGCCTATTCCTCAATAGGACTTGGCCTCTCCCTAGCAAAAGTTATAAGTGGACCTCATGCAAGGACAACCTTAACCGGAGGAACAGTTGGGATAGATGTGTCGGCCTCTGAGAAAGTTTGGAAGACCTTCCAAGCCATTGGAGACATTGCCTTTGCTTATGCTTACTCTACCGTTCTTGTGGAAATACAGGACACACTGAAATCACCCCCGGCAGAAAACAAAGCCATGAAGAGGGCAACTAGCATTGGCATCGCAACCACCACAGTGTTCTATGTTCTCTGCGGATGCGTTGGTTATGCAGCGTTTGGGAATGATGCACCGGGAAATTTTCTCACCGGTTTCGGATTCTACGAACCCTTTTGGCTAGTCGACGTCGCCAACATTTGCATCGCCATCCACCTAATCGGTGCTTACCAGGTCTTCTGCCAGCCCATATTCGGGTTTGTTGAAAGCAGCTGCGCTCAACGGTGGCCGGAAAGCGAGTTCATAAACCGCGAGTACCCCATTAACATTCCGTTCTGTGGTCAATTCTGTGTCAACTCCTTCAGATTGGTGTGGAGGACCGCATACGTGGTGATGACGGCAATCCTAGCCATGCTGTTCCCGTTCTTCAACGACTTCCTGGGATTGCTCGGAGCAGCCTCCTTCTGGCCGCTGACAGTCTACTTCCCGATAGAGATGTACATTGCAAGGACAAAAATGCCCAAGTTCACTTTCACCTGGACTTGGATGAAGATTCTGAGCTGGGTGTGCCTGGTAATTTCGCTCGTTGCAGCTGCTGCATCGATTCAAGGTCTGGCAACAGATGTCAAGAAATACAAGCCCTTCCACACCGAGCAATAG

Protein Analysis

484

Amino Acids

53.42

Weight (kDa)

8.99

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 36 - 469 6.6e-127 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49630
fragaria_vesca FvH4_5g33530
malus_domestica MD08G1211100.v1.1
prunus_persica Prupe.1G543000_v2.0.a1
pyrus_communis pycom15g35510
rosa_chinensis RchiOBHm_Chr7g0232341
rosa_laevigata RLG00000001355
rosa_multiflora Rmu_sc0011325.1_g000003
rosa_roxburghii Rroxscaffold_3G00228450
rosa_rugosa Rorug07G0272700
rosa_samantha Rh7AG426600
rosa_wichuraiana Rw7G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 653
AatII GACGTC 1 cut(s) 984
AccI GTMKAC 2 cut(s) 978, 1272
AccII CGCG 1 cut(s) 1104
AciI CCGC 7 cut(s) 255, 300, 443, 891, 1102, 1173, 1262
AcoI YGGCCR 4 cut(s) 94, 475, 1079, 1259
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 1 cut(s) 1138
AcyI GRCGYC 1 cut(s) 981
AfaI GTAC 4 cut(s) 32, 333, 1109, 1292
AfiI CCNNNNNNNGG 7 cut(s) 299, 840, 1046, 1047, 1130, 1257, 1335
AgeI ACCGGT 1 cut(s) 944
AgsI TTSAA 4 cut(s) 387, 1058, 1222, 1400
AjnI CCWGG 4 cut(s) 1023, 1230, 1328, 1362
AjuI GAANNNNNNNTTGG 2 cut(s) 1307, 1339
AleI CACNNNNGTG 1 cut(s) 872
AloI GAACNNNNNNTCC 2 cut(s) 1076, 1108
AluBI AGCT 6 cut(s) 191, 364, 571, 1065, 1353, 1385
AluI AGCT 6 cut(s) 191, 364, 571, 1065, 1353, 1385
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 3 cut(s) 177, 288, 744
Alw44I GTGCAC 1 cut(s) 132
AlwNI CAGNNNCTG 2 cut(s) 215, 1388
AoxI GGCC 8 cut(s) 94, 212, 228, 475, 631, 711, 1079, 1259
ApaLI GTGCAC 1 cut(s) 132
ApeKI GCWGC 9 cut(s) 361, 593, 908, 1062, 1065, 1247, 1382, 1385, 1388
ApoI RAATTY 1 cut(s) 934
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
AsiGI ACCGGT 1 cut(s) 944
Asp700I GAANNNNTTC 1 cut(s) 734
AspLEI GCGC 1 cut(s) 1070
AspS9I GGNCC 3 cut(s) 212, 659, 1170
AsuC2I CCSGG 2 cut(s) 818, 930
AsuHPI GGTGA 8 cut(s) 77, 235, 244, 457, 804, 934, 1195, 1318
AvaII GGWCC 2 cut(s) 659, 1170
BaeGI GKGCMC 1 cut(s) 136
BalI TGGCCA 1 cut(s) 477
BbsI GAAGAC 3 cut(s) 26, 737, 1021
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 9 cut(s) 373, 605, 920, 1052, 1074, 1259, 1372, 1375, 1394
BccI CCATC 7 cut(s) 86, 195, 413, 437, 486, 605, 1010
BceAI ACGGC 3 cut(s) 81, 162, 1206
BcgI CGANNNNNNTGC 2 cut(s) 841, 875
BciT130I CCWGG 4 cut(s) 1025, 1232, 1330, 1364
BcnI CCSGG 2 cut(s) 818, 930
BcoDI GTCTC 3 cut(s) 177, 288, 744
BfaI CTAG 7 cut(s) 24, 129, 344, 641, 849, 974, 1199
Bme1390I CCNGG 6 cut(s) 818, 930, 1025, 1232, 1330, 1364
Bme18I GGWCC 2 cut(s) 659, 1170
BmgT120I GGNCC 3 cut(s) 212, 659, 1170
BmrFI CCNGG 6 cut(s) 818, 930, 1025, 1232, 1330, 1364
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 7 cut(s) 434, 540, 867, 884, 913, 1005, 1400
BmuI ACTGGG 1 cut(s) 120
BpiI GAAGAC 3 cut(s) 26, 737, 1021
BpuMI CCSGG 2 cut(s) 818, 930
Bsa29I ATCGAT 1 cut(s) 1394
BsaAI YACGTR 1 cut(s) 1180
BsaHI GRCGYC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 816, 1231
BsaWI WCCGGW 2 cut(s) 683, 944
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 7 cut(s) 299, 840, 1046, 1047, 1130, 1257, 1335
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 2 cut(s) 753, 1293
BseBI CCWGG 4 cut(s) 1025, 1232, 1330, 1364
BseCI ATCGAT 1 cut(s) 1394
BseDI CCNNGG 2 cut(s) 816, 1231
BseGI GGATG 7 cut(s) 126, 206, 425, 531, 899, 1002, 1344
BseLI CCNNNNNNNGG 7 cut(s) 299, 840, 1046, 1047, 1130, 1257, 1335
BseMI GCAATG 2 cut(s) 753, 1293
BseMII CTCAG 5 cut(s) 206, 392, 559, 708, 1340
BseNI ACTGG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 136
BseXI GCAGC 9 cut(s) 373, 605, 920, 1052, 1074, 1259, 1372, 1375, 1394
BseYI CCCAGC 1 cut(s) 1353
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 1104
BshFI GGCC 8 cut(s) 96, 214, 230, 477, 633, 713, 1081, 1261
BshTI ACCGGT 1 cut(s) 944
BshVI ATCGAT 1 cut(s) 1394
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 5 cut(s) 684, 818, 929, 945, 1082
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 7 cut(s) 299, 840, 1046, 1047, 1130, 1257, 1335
BsmAI GTCTC 3 cut(s) 177, 288, 744
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 8 cut(s) 96, 214, 230, 477, 633, 713, 1081, 1261
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 2 cut(s) 30, 1290
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 7 cut(s) 255, 300, 443, 891, 1102, 1173, 1262
BspANI GGCC 8 cut(s) 96, 214, 230, 477, 633, 713, 1081, 1261
BspCNI CTCAG 5 cut(s) 205, 391, 558, 709, 1341
BspDI ATCGAT 1 cut(s) 1394
BspFNI CGCG 1 cut(s) 1104
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 753, 1293
BsrFI RCCGGY 1 cut(s) 944
BsrGI TGTACA 2 cut(s) 30, 1290
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 2 cut(s) 816, 1231
BssMI GATC 1 cut(s) 37
BssNI GRCGYC 1 cut(s) 981
Bst2UI CCWGG 4 cut(s) 1025, 1232, 1330, 1364
Bst4CI ACNGT 7 cut(s) 65, 275, 694, 781, 874, 1077, 1270
Bst6I CTCTTC 2 cut(s) 443, 833
BstACI GRCGYC 1 cut(s) 981
BstAPI GCANNNNNTGC 2 cut(s) 215, 1388
BstAUI TGTACA 2 cut(s) 30, 1290
BstBAI YACGTR 1 cut(s) 1180
BstC8I GCNNGC 4 cut(s) 216, 267, 529, 1037
BstDEI CTNAG 5 cut(s) 192, 378, 545, 717, 1349
BstF5I GGATG 7 cut(s) 126, 206, 425, 531, 899, 1002, 1344
BstFNI CGCG 1 cut(s) 1104
BstHHI GCGC 1 cut(s) 1070
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 3 cut(s) 177, 288, 744
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 5 cut(s) 215, 577, 1199, 1359, 1388
BstNI CCWGG 4 cut(s) 1025, 1232, 1330, 1364
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 6 cut(s) 816, 928, 1023, 1230, 1328, 1362
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 1 cut(s) 1104
BstV1I GCAGC 9 cut(s) 373, 605, 920, 1052, 1074, 1259, 1372, 1375, 1394
BstV2I GAAGAC 3 cut(s) 26, 737, 1021
BstXI CCANNNNNNTGG 2 cut(s) 436, 746
Bsu15I ATCGAT 1 cut(s) 1394
BsuRI GGCC 8 cut(s) 96, 214, 230, 477, 633, 713, 1081, 1261
BsuTUI ATCGAT 1 cut(s) 1394
BtgZI GCGATG 2 cut(s) 844, 982
BtsCI GGATG 7 cut(s) 126, 206, 425, 531, 899, 1002, 1344
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 420, 803, 879
Cac8I GCNNGC 4 cut(s) 216, 267, 529, 1037
CaiI CAGNNNCTG 2 cut(s) 215, 1388
CfoI GCGC 1 cut(s) 1070
Cfr10I RCCGGY 1 cut(s) 944
Cfr13I GGNCC 3 cut(s) 212, 659, 1170
ClaI ATCGAT 1 cut(s) 1394
CsiI ACCWGGT 1 cut(s) 1023
Csp6I GTAC 4 cut(s) 31, 332, 1108, 1291
CspAI ACCGGT 1 cut(s) 944
CviQI GTAC 4 cut(s) 31, 332, 1108, 1291
DdeI CTNAG 5 cut(s) 192, 378, 545, 717, 1349
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 4 cut(s) 94, 475, 1079, 1259
Eam1104I CTCTTC 2 cut(s) 443, 833
EarI CTCTTC 2 cut(s) 443, 833
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 659, 1170
Eco57I CTGAAG 1 cut(s) 1138
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 4 cut(s) 1023, 1230, 1328, 1362
FaqI GGGAC 1 cut(s) 127
FblI GTMKAC 2 cut(s) 978, 1272
FokI GGATG 7 cut(s) 133, 213, 412, 518, 906, 989, 1351
FspBI CTAG 7 cut(s) 24, 129, 344, 641, 849, 974, 1199
GlaI GCGC 1 cut(s) 1069
GsaI CCCAGC 1 cut(s) 1357
HaeIII GGCC 8 cut(s) 96, 214, 230, 477, 633, 713, 1081, 1261
HapII CCGG 5 cut(s) 684, 818, 929, 945, 1082
HhaI GCGC 1 cut(s) 1070
Hin1I GRCGYC 1 cut(s) 981
Hin6I GCGC 1 cut(s) 1068
HinP1I GCGC 1 cut(s) 1068
HincII GTYRAC 2 cut(s) 979, 1147
HindII GTYRAC 2 cut(s) 979, 1147
HinfI GANTC 3 cut(s) 954, 1345, 1396
HpaII CCGG 5 cut(s) 684, 818, 929, 945, 1082
HphI GGTGA 8 cut(s) 77, 235, 244, 457, 804, 934, 1195, 1318
Hpy166II GTNNAC 7 cut(s) 85, 134, 659, 979, 1147, 1273, 1320
Hpy188I TCNGA 6 cut(s) 18, 718, 953, 1157, 1244, 1350
Hpy188III TCNNGA 3 cut(s) 287, 1279, 1420
Hpy8I GTNNAC 7 cut(s) 85, 134, 659, 979, 1147, 1273, 1320
Hpy99I CGWCG 3 cut(s) 92, 983, 986
HpyAV CCTTC 4 cut(s) 745, 1162, 1264, 1444
HpyCH4III ACNGT 7 cut(s) 65, 275, 694, 781, 874, 1077, 1270
HpyCH4IV ACGT 4 cut(s) 81, 327, 981, 1179
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 577, 1199, 1359, 1388
HpyF3I CTNAG 5 cut(s) 192, 378, 545, 717, 1349
HpySE526I ACGT 4 cut(s) 81, 327, 981, 1179
Hsp92I GRCGYC 1 cut(s) 981
HspAI GCGC 1 cut(s) 1068
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 1244
Lsp1109I GCAGC 9 cut(s) 373, 605, 920, 1052, 1074, 1259, 1372, 1375, 1394
LweI GCATC 7 cut(s) 434, 540, 867, 884, 913, 1005, 1400
MabI ACCWGGT 1 cut(s) 1023
MaeI CTAG 7 cut(s) 24, 129, 344, 641, 849, 974, 1199
MaeII ACGT 4 cut(s) 81, 327, 981, 1179
MaeIII GTNAC 5 cut(s) 65, 275, 400, 410, 491
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 7 cut(s) 31, 460, 742, 850, 1021, 1210, 1354
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 4 cut(s) 457, 934, 1136, 1368
MluNI TGGCCA 1 cut(s) 477
MmeI TCCRAC 1 cut(s) 559
Mox20I TGGCCA 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 734
MscI TGGCCA 1 cut(s) 477
MseI TTAA 2 cut(s) 680, 1116
MslI CAYNNNNRTG 4 cut(s) 320, 434, 471, 872
Msp20I TGGCCA 1 cut(s) 477
MspA1I CMGCKG 5 cut(s) 300, 364, 1065, 1264, 1385
MspI CCGG 5 cut(s) 684, 818, 929, 945, 1082
MspR9I CCNGG 6 cut(s) 818, 930, 1025, 1232, 1330, 1364
MvaI CCWGG 4 cut(s) 1025, 1232, 1330, 1364
MvnI CGCG 1 cut(s) 1104
MwoI GCNNNNNNNGC 5 cut(s) 215, 577, 1199, 1359, 1388
NciI CCSGG 2 cut(s) 818, 930
NdeII GATC 1 cut(s) 37
NmuCI GTSAC 2 cut(s) 65, 491
NspI RCATGY 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 872
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 957
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 3 cut(s) 954, 1345, 1396
PflFI GACNNNGTC 1 cut(s) 293
PinAI ACCGGT 1 cut(s) 944
Ppu21I YACGTR 1 cut(s) 1180
PsiI TTATAA 1 cut(s) 653
Psp6I CCWGG 4 cut(s) 1023, 1230, 1328, 1362
PspFI CCCAGC 1 cut(s) 1353
PspGI CCWGG 4 cut(s) 1023, 1230, 1328, 1362
PspPI GGNCC 3 cut(s) 212, 659, 1170
PstNI CAGNNNCTG 2 cut(s) 215, 1388
PsyI GACNNNGTC 1 cut(s) 293
PvuII CAGCTG 3 cut(s) 364, 1065, 1385
RsaI GTAC 4 cut(s) 32, 333, 1109, 1292
RsaNI GTAC 4 cut(s) 31, 332, 1108, 1291
RseI CAYNNNNRTG 4 cut(s) 320, 434, 471, 872
SalI GTCGAC 1 cut(s) 977
SaqAI TTAA 2 cut(s) 680, 1116
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 3 cut(s) 212, 659, 1170
ScrFI CCNGG 6 cut(s) 818, 930, 1025, 1232, 1330, 1364
SduI GDGCHC 1 cut(s) 136
SexAI ACCWGGT 1 cut(s) 1023
SfaNI GCATC 7 cut(s) 434, 540, 867, 884, 913, 1005, 1400
SinI GGWCC 2 cut(s) 659, 1170
SmiMI CAYNNNNRTG 4 cut(s) 320, 434, 471, 872
Sse9I AATT 4 cut(s) 457, 934, 1136, 1368
SsiI CCGC 7 cut(s) 255, 300, 443, 891, 1102, 1173, 1262
SspMI CTAG 7 cut(s) 24, 129, 344, 641, 849, 974, 1199
StyD4I CCNGG 6 cut(s) 816, 928, 1023, 1230, 1328, 1362
TaaI ACNGT 7 cut(s) 65, 275, 694, 781, 874, 1077, 1270
TaiI ACGT 4 cut(s) 84, 330, 984, 1182
TaqI TCGA 4 cut(s) 57, 455, 978, 1394
TasI AATT 4 cut(s) 457, 934, 1136, 1368
TatI WGTACW 2 cut(s) 30, 1290
TauI GCSGC 2 cut(s) 303, 1264
TfiI GAWTC 3 cut(s) 954, 1345, 1396
Tru1I TTAA 2 cut(s) 680, 1116
Tru9I TTAA 2 cut(s) 680, 1116
TscAI CASTG 3 cut(s) 427, 810, 879
TseFI GTSAC 2 cut(s) 65, 491
TseI GCWGC 9 cut(s) 361, 593, 908, 1062, 1065, 1247, 1382, 1385, 1388
Tsp45I GTSAC 2 cut(s) 65, 491
TspDTI ATGAA 4 cut(s) 229, 851, 1084, 1355
TspGWI ACGGA 1 cut(s) 1113
TspRI CASTG 3 cut(s) 427, 810, 879
Tth111I GACNNNGTC 1 cut(s) 293
VneI GTGCAC 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 659, 1170
XapI RAATTY 1 cut(s) 934
XceI RCATGY 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmiI GTMKAC 2 cut(s) 978, 1272
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 7 cut(s) 24, 129, 344, 641, 849, 974, 1199
ZraI GACGTC 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.