pycom15g35510

Amino acid permease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
35563420 .. 35570013
6594 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g35510.3

Sequence Viewer

Length: 1632 bp
ATGTTCTCCTCCCCCCCCCCCCCCCCCCCTTCCTTTTCACTGATTCATATATACTCTCCTCACTCCCCATTTCTCTCTATAACAACCCAAATACCAAACCCTTTTGGTCCAATTTCTCTCTCAACTCCCTTGCAACCAAAACTAAGAGCTACAAATCAAGAGAGAGAGAGAGAGAGAGAGATGGCAGGCCAGTTTCAGAAGACTAGCATGTACATAGAGCACAACCCTGAAATAATCGAAAACGGTGACTTTCGCAAGAACGTGGACGACGATGGCCGTACCAAAAGAACCGGGACATGGGTGACTGCTAGTGCACATATCATAACGGCTGTGATAGGGTCCGGGGTGTTGTCCCTGGCATGGTCAATAGCTCAGTTGGGATGGGTTGCAGGGCCTGCTATTCTCATGGCCTTCTCTTTCATCACCTTCTTCACATCCACTCTGCTCGCCGACTGTTACAGGTCTCCCGACCCTGTCAGCGGCAAAAGAAACTACACCTACATGGATGTCGTACAAGCCAATCTAGGAGGCAGAAAAGTGCAGCTGTGTGGATTGGCTCAGTATGGAAATCTGATTGGTGTTACTATCGGTTATACAATTACTGCATCCATCAGCATGGTGGCGGTGAAGAGGTCGAATTGTTTTCACAAGCATGGTCATCATGTCAAGTGTCACACATCAAATAACCCTTTTATGATAATCTTTGCTTGCATCCAACTCTTTCTCAGCCAAATACAAAACTTTCATAAACTCTCGTGGCTGTCAATACTTGCAGCCGTCATGTCATTTGCCTATTCATCAATAGGCCTTGGCCTCTCCATAGCAAAAGTTATAGGTGGACCACATGCAAGGACTACCTTAACCGGAACTACAGTCGGGATAGATGTGTCGGCCTCCGAGAAAGTTTGGAACACATTCCAAGCCATTGGAGACATTGCCTTTGCTTATGCATACTCTACCGTTCTTGTGGAAATACAGGACACACTGAAATCACCCCCGGCAGAGAACAAGGCCATGAAGAGGGCAACTAGCATTGGCATTGCGACCACCACCCTGTTCTATGTTCTCTGCGGTTCCGTTGGTTATGCAGCTTTTGGGAATAATGCACCCGGAAACTTTCTCACCGGTTTCGGATTCTATGAACCCTTTTGGCTTGTTGATATCGCCAACATTTGCATCGCCATCCACCTAATCGGTGCTTACCAGGTCTTCTGCCAGCCCATATTCGGGTTTGTGGAAAGCAAATGCGCCAAACGGTGGCCAGATAGCAAGTTCATCAACAGCGAGTACCCCATTAACATTCCGTTTTGCGGTCAATTCTGCGTCAACTCCTTCAGATTGGTGTGGAGGACTGCATATGTGGTGATGACCGCAATCCTGGCCATGTTGTTCCCGTTCTTCAACCACTTCCTGGCATTTCTCGGAGCAGCCTCGTTCTGGCCACTGACAGTCTACTTCCCGATAGAGATGTACATGGCAAGGACAAAAATCCCCAAGTTCACTTTCACCTGGACTTGGATGAAGATTCTGAGCTGGGTGTGCTTGGTGATTTCGCTTGTTGCAGCTGCTGCATCCATTCAAGGTCTGGTAACCGATGTCAAGAAATACAAGCCCTTCCACACTGAGCAATAG

Protein Analysis

544

Amino Acids

60.17

Weight (kDa)

9.13

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49630
fragaria_vesca FvH4_5g33530
malus_domestica MD08G1211100.v1.1
prunus_persica Prupe.1G543000_v2.0.a1
pyrus_communis pycom15g35510
rosa_chinensis RchiOBHm_Chr7g0232341
rosa_laevigata RLG00000001355
rosa_multiflora Rmu_sc0011325.1_g000003
rosa_roxburghii Rroxscaffold_3G00228450
rosa_rugosa Rorug07G0272700
rosa_samantha Rh7AG426600
rosa_wichuraiana Rw7G035370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1257, 1411
AccI GTMKAC 1 cut(s) 1452
AciI CCGC 5 cut(s) 480, 623, 1071, 1311, 1371
AcoI YGGCCR 4 cut(s) 274, 1259, 1380, 1439
AcuI CTGAAG 1 cut(s) 1318
AfaI GTAC 5 cut(s) 212, 280, 513, 1289, 1472
AgeI ACCGGT 1 cut(s) 1124
AgsI TTSAA 2 cut(s) 1402, 1580
AjnI CCWGG 5 cut(s) 354, 1203, 1377, 1410, 1508
AjuI GAANNNNNNNTTGG 2 cut(s) 1487, 1519
AluBI AGCT 6 cut(s) 149, 371, 544, 1091, 1533, 1565
AluI AGCT 6 cut(s) 149, 371, 544, 1091, 1533, 1565
Alw21I GWGCWC 2 cut(s) 222, 316
Alw26I GTCTC 2 cut(s) 468, 924
Alw44I GTGCAC 1 cut(s) 312
AlwNI CAGNNNCTG 2 cut(s) 395, 1568
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 7 cut(s) 541, 773, 1088, 1427, 1562, 1565, 1568
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AsiGI ACCGGT 1 cut(s) 1124
Asp700I GAANNNNTTC 1 cut(s) 914
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 4 cut(s) 107, 339, 392, 839
AsuC2I CCSGG 4 cut(s) 292, 343, 998, 1110
AsuHPI GGTGA 9 cut(s) 257, 313, 415, 637, 984, 1114, 1375, 1498, 1558
AvaII GGWCC 3 cut(s) 107, 339, 839
BaeGI GKGCMC 1 cut(s) 316
BalI TGGCCA 3 cut(s) 1261, 1382, 1441
BauI CACGAG 1 cut(s) 754
BbsI GAAGAC 2 cut(s) 206, 1201
Bbv12I GWGCWC 2 cut(s) 222, 316
BbvI GCAGC 7 cut(s) 553, 785, 1100, 1439, 1552, 1555, 1574
BccI CCATC 5 cut(s) 175, 266, 375, 617, 1190
BceAI ACGGC 3 cut(s) 261, 342, 761
BciT130I CCWGG 5 cut(s) 356, 1205, 1379, 1412, 1510
BcnI CCSGG 4 cut(s) 292, 343, 998, 1110
BcoDI GTCTC 2 cut(s) 468, 924
BfaI CTAG 4 cut(s) 204, 309, 524, 1029
BfmI CTRYAG 1 cut(s) 870
BisI GCNGC 8 cut(s) 481, 542, 774, 1089, 1428, 1563, 1566, 1569
BlsI GCNGC 8 cut(s) 482, 543, 775, 1090, 1429, 1564, 1567, 1570
Bme1390I CCNGG 9 cut(s) 292, 343, 356, 998, 1110, 1205, 1379, 1412, 1510
Bme18I GGWCC 3 cut(s) 107, 339, 839
BmgT120I GGNCC 4 cut(s) 107, 339, 392, 839
BmiI GGNNCC 2 cut(s) 340, 1075
BmrFI CCNGG 9 cut(s) 292, 343, 356, 998, 1110, 1205, 1379, 1412, 1510
BmsI GCATC 4 cut(s) 614, 720, 1185, 1580
BpiI GAAGAC 2 cut(s) 206, 1201
BpuMI CCSGG 4 cut(s) 292, 343, 998, 1110
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 4 cut(s) 342, 354, 808, 996
BsaWI WCCGGW 2 cut(s) 863, 1124
Bse118I RCCGGY 1 cut(s) 1124
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 2 cut(s) 933, 1038
BseBI CCWGG 5 cut(s) 356, 1205, 1379, 1412, 1510
BseDI CCNNGG 4 cut(s) 342, 354, 808, 996
BseGI GGATG 8 cut(s) 386, 434, 511, 605, 711, 1182, 1524, 1571
BseMI GCAATG 2 cut(s) 933, 1038
BseMII CTCAG 5 cut(s) 386, 572, 739, 1520, 1614
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 7 cut(s) 553, 785, 1100, 1439, 1552, 1555, 1574
BseYI CCCAGC 1 cut(s) 1533
BsgI GTGCAG 1 cut(s) 560
BshTI ACCGGT 1 cut(s) 1124
BsiHKAI GWGCWC 2 cut(s) 222, 316
BsiSI CCGG 6 cut(s) 291, 342, 864, 998, 1110, 1125
BslFI GGGAC 2 cut(s) 307, 337
BsmAI GTCTC 2 cut(s) 468, 924
BsmFI GGGAC 2 cut(s) 307, 337
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 222, 316
Bsp1407I TGTACA 2 cut(s) 210, 1470
BspACI CCGC 5 cut(s) 480, 623, 1071, 1311, 1371
BspCNI CTCAG 5 cut(s) 385, 571, 738, 1521, 1615
BspLI GGNNCC 2 cut(s) 340, 1075
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 2 cut(s) 933, 1038
BsrFI RCCGGY 1 cut(s) 1124
BsrGI TGTACA 2 cut(s) 210, 1470
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 1124
BssECI CCNNGG 4 cut(s) 342, 354, 808, 996
BssSI CACGAG 1 cut(s) 754
BssT1I CCWWGG 1 cut(s) 808
Bst2BI CACGAG 1 cut(s) 754
Bst2UI CCWGG 5 cut(s) 356, 1205, 1379, 1412, 1510
Bst4CI ACNGT 6 cut(s) 245, 455, 874, 961, 1257, 1450
Bst6I CTCTTC 2 cut(s) 623, 1013
BstAPI GCANNNNNTGC 2 cut(s) 395, 1568
BstAUI TGTACA 2 cut(s) 210, 1470
BstC8I GCNNGC 5 cut(s) 187, 396, 447, 709, 1217
BstDEI CTNAG 6 cut(s) 143, 372, 558, 725, 1529, 1623
BstEII GGTNACC 1 cut(s) 1588
BstF5I GGATG 8 cut(s) 386, 434, 511, 605, 711, 1182, 1524, 1571
BstHHI GCGC 1 cut(s) 1250
BstMAI GTCTC 2 cut(s) 468, 924
BstMWI GCNNNNNNNGC 4 cut(s) 395, 1379, 1539, 1568
BstNI CCWGG 5 cut(s) 356, 1205, 1379, 1412, 1510
BstNSI RCATGY 2 cut(s) 211, 848
BstPI GGTNACC 1 cut(s) 1588
BstSCI CCNGG 9 cut(s) 290, 341, 354, 996, 1108, 1203, 1377, 1410, 1508
BstSFI CTRYAG 1 cut(s) 870
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 7 cut(s) 553, 785, 1100, 1439, 1552, 1555, 1574
BstV2I GAAGAC 2 cut(s) 206, 1201
BstXI CCANNNNNNTGG 2 cut(s) 616, 926
BtgZI GCGATG 1 cut(s) 1162
BtsCI GGATG 8 cut(s) 386, 434, 511, 605, 711, 1182, 1524, 1571
BtsIMutI CAGTG 4 cut(s) 38, 983, 1442, 1620
Cac8I GCNNGC 5 cut(s) 187, 396, 447, 709, 1217
CaiI CAGNNNCTG 2 cut(s) 395, 1568
CfoI GCGC 1 cut(s) 1250
Cfr10I RCCGGY 1 cut(s) 1124
Cfr13I GGNCC 4 cut(s) 107, 339, 392, 839
CseI GACGC 1 cut(s) 1312
CsiI ACCWGGT 1 cut(s) 1203
Csp6I GTAC 5 cut(s) 211, 279, 512, 1288, 1471
CspAI ACCGGT 1 cut(s) 1124
CviQI GTAC 5 cut(s) 211, 279, 512, 1288, 1471
DdeI CTNAG 6 cut(s) 143, 372, 558, 725, 1529, 1623
EaeI YGGCCR 4 cut(s) 274, 1259, 1380, 1439
Eam1104I CTCTTC 2 cut(s) 623, 1013
EarI CTCTTC 2 cut(s) 623, 1013
Eco130I CCWWGG 1 cut(s) 808
Eco147I AGGCCT 1 cut(s) 807
Eco31I GGTCTC 1 cut(s) 468
Eco32I GATATC 1 cut(s) 1162
Eco47I GGWCC 3 cut(s) 107, 339, 839
Eco57I CTGAAG 1 cut(s) 1318
Eco91I GGTNACC 1 cut(s) 1588
EcoO109I RGGNCCY 1 cut(s) 392
EcoO65I GGTNACC 1 cut(s) 1588
EcoRII CCWGG 5 cut(s) 354, 1203, 1377, 1410, 1508
EcoRV GATATC 1 cut(s) 1162
EcoT14I CCWWGG 1 cut(s) 808
EcoT22I ATGCAT 1 cut(s) 952
ErhI CCWWGG 1 cut(s) 808
FaqI GGGAC 2 cut(s) 307, 337
FauNDI CATATG 1 cut(s) 1357
FblI GTMKAC 1 cut(s) 1452
Fnu4HI GCNGC 8 cut(s) 481, 542, 774, 1089, 1428, 1563, 1566, 1569
FokI GGATG 8 cut(s) 393, 421, 518, 592, 698, 1169, 1531, 1558
Fsp4HI GCNGC 8 cut(s) 481, 542, 774, 1089, 1428, 1563, 1566, 1569
FspBI CTAG 4 cut(s) 204, 309, 524, 1029
GlaI GCGC 1 cut(s) 1249
GluI GCNGC 8 cut(s) 481, 542, 774, 1089, 1428, 1563, 1566, 1569
GsaI CCCAGC 1 cut(s) 1537
HapII CCGG 6 cut(s) 291, 342, 864, 998, 1110, 1125
HgaI GACGC 1 cut(s) 1312
HhaI GCGC 1 cut(s) 1250
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HincII GTYRAC 1 cut(s) 1327
HindII GTYRAC 1 cut(s) 1327
HinfI GANTC 3 cut(s) 43, 1134, 1525
HpaII CCGG 6 cut(s) 291, 342, 864, 998, 1110, 1125
HphI GGTGA 9 cut(s) 257, 313, 415, 637, 984, 1114, 1375, 1498, 1558
Hpy166II GTNNAC 6 cut(s) 265, 314, 839, 1327, 1453, 1500
Hpy188I TCNGA 7 cut(s) 198, 573, 898, 1133, 1337, 1424, 1530
Hpy188III TCNNGA 5 cut(s) 158, 467, 877, 1459, 1600
Hpy8I GTNNAC 6 cut(s) 265, 314, 839, 1327, 1453, 1500
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 5 cut(s) 39, 421, 436, 1342, 1624
HpyCH4III ACNGT 6 cut(s) 245, 455, 874, 961, 1257, 1450
HpyCH4IV ACGT 1 cut(s) 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 1379, 1539, 1568
HpyF3I CTNAG 6 cut(s) 143, 372, 558, 725, 1529, 1623
HpySE526I ACGT 1 cut(s) 261
HspAI GCGC 1 cut(s) 1248
LmnI GCTCC 1 cut(s) 1424
Lsp1109I GCAGC 7 cut(s) 553, 785, 1100, 1439, 1552, 1555, 1574
LweI GCATC 4 cut(s) 614, 720, 1185, 1580
MabI ACCWGGT 1 cut(s) 1203
MaeI CTAG 4 cut(s) 204, 309, 524, 1029
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 6 cut(s) 245, 301, 455, 580, 671, 1588
MboII GAAGA 7 cut(s) 211, 421, 640, 1030, 1201, 1390, 1534
MhlI GDGCHC 2 cut(s) 222, 316
MlsI TGGCCA 3 cut(s) 1261, 1382, 1441
MluCI AATT 4 cut(s) 111, 597, 637, 1316
MluNI TGGCCA 3 cut(s) 1261, 1382, 1441
MmeI TCCRAC 1 cut(s) 739
MnlI CCTC 9 cut(s) 19, 69, 521, 624, 824, 904, 1014, 1341, 1441
Mox20I TGGCCA 3 cut(s) 1261, 1382, 1441
Mph1103I ATGCAT 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 914
MscI TGGCCA 3 cut(s) 1261, 1382, 1441
MseI TTAA 2 cut(s) 860, 1296
MslI CAYNNNNRTG 3 cut(s) 500, 614, 651
Msp20I TGGCCA 3 cut(s) 1261, 1382, 1441
MspA1I CMGCKG 3 cut(s) 480, 544, 1565
MspI CCGG 6 cut(s) 291, 342, 864, 998, 1110, 1125
MspR9I CCNGG 9 cut(s) 292, 343, 356, 998, 1110, 1205, 1379, 1412, 1510
MvaI CCWGG 5 cut(s) 356, 1205, 1379, 1412, 1510
MwoI GCNNNNNNNGC 4 cut(s) 395, 1379, 1539, 1568
NciI CCSGG 4 cut(s) 292, 343, 998, 1110
NdeI CATATG 1 cut(s) 1357
NlaIV GGNNCC 2 cut(s) 340, 1075
NmuCI GTSAC 3 cut(s) 245, 301, 671
NsiI ATGCAT 1 cut(s) 952
NspI RCATGY 2 cut(s) 211, 848
PceI AGGCCT 1 cut(s) 807
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 914
PfeI GAWTC 3 cut(s) 43, 1134, 1525
PflFI GACNNNGTC 1 cut(s) 473
PflMI CCANNNNNTGG 2 cut(s) 1257, 1411
PinAI ACCGGT 1 cut(s) 1124
PkrI GCNGC 8 cut(s) 482, 543, 775, 1090, 1429, 1564, 1567, 1570
Psp6I CCWGG 5 cut(s) 354, 1203, 1377, 1410, 1508
PspEI GGTNACC 1 cut(s) 1588
PspFI CCCAGC 1 cut(s) 1533
PspGI CCWGG 5 cut(s) 354, 1203, 1377, 1410, 1508
PspN4I GGNNCC 2 cut(s) 340, 1075
PspPI GGNCC 4 cut(s) 107, 339, 392, 839
PstNI CAGNNNCTG 2 cut(s) 395, 1568
PsyI GACNNNGTC 1 cut(s) 473
PvuII CAGCTG 2 cut(s) 544, 1565
RsaI GTAC 5 cut(s) 212, 280, 513, 1289, 1472
RsaNI GTAC 5 cut(s) 211, 279, 512, 1288, 1471
RseI CAYNNNNRTG 3 cut(s) 500, 614, 651
SaqAI TTAA 2 cut(s) 860, 1296
SatI GCNGC 8 cut(s) 481, 542, 774, 1089, 1428, 1563, 1566, 1569
Sau96I GGNCC 4 cut(s) 107, 339, 392, 839
ScrFI CCNGG 9 cut(s) 292, 343, 356, 998, 1110, 1205, 1379, 1412, 1510
SduI GDGCHC 2 cut(s) 222, 316
SexAI ACCWGGT 1 cut(s) 1203
SfaNI GCATC 4 cut(s) 614, 720, 1185, 1580
SfcI CTRYAG 1 cut(s) 870
SinI GGWCC 3 cut(s) 107, 339, 839
SmiMI CAYNNNNRTG 3 cut(s) 500, 614, 651
Sse9I AATT 4 cut(s) 111, 597, 637, 1316
SseBI AGGCCT 1 cut(s) 807
SsiI CCGC 5 cut(s) 480, 623, 1071, 1311, 1371
SspMI CTAG 4 cut(s) 204, 309, 524, 1029
StuI AGGCCT 1 cut(s) 807
StyD4I CCNGG 9 cut(s) 290, 341, 354, 996, 1108, 1203, 1377, 1410, 1508
StyI CCWWGG 1 cut(s) 808
TaaI ACNGT 6 cut(s) 245, 455, 874, 961, 1257, 1450
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 237, 635
TasI AATT 4 cut(s) 111, 597, 637, 1316
TatI WGTACW 2 cut(s) 210, 1470
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 3 cut(s) 43, 1134, 1525
Tru1I TTAA 2 cut(s) 860, 1296
Tru9I TTAA 2 cut(s) 860, 1296
TscAI CASTG 4 cut(s) 45, 990, 1449, 1627
TseFI GTSAC 3 cut(s) 245, 301, 671
TseI GCWGC 7 cut(s) 541, 773, 1088, 1427, 1562, 1565, 1568
Tsp45I GTSAC 3 cut(s) 245, 301, 671
TspDTI ATGAA 8 cut(s) 35, 409, 734, 786, 1031, 1155, 1264, 1535
TspGWI ACGGA 2 cut(s) 1066, 1293
TspRI CASTG 4 cut(s) 45, 990, 1449, 1627
Tth111I GACNNNGTC 1 cut(s) 473
Van91I CCANNNNNTGG 2 cut(s) 1257, 1411
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 3 cut(s) 107, 339, 839
XceI RCATGY 2 cut(s) 211, 848
XcmI CCANNNNNNNNNTGG 2 cut(s) 616, 1582
XmiI GTMKAC 1 cut(s) 1452
XmnI GAANNNNTTC 1 cut(s) 914
XspI CTAG 4 cut(s) 204, 309, 524, 1029
Zsp2I ATGCAT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.