Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017522

Physical Location & Seq

Genomic Coordinates Reverse (-)

25842225 .. 25842605

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0272700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTGTTGCCACCCTCCTTAGTATTTCAGGTTAATCGAACCCAGCCACAACTTATAACTCCGGCAAGGCCAACTCCTTGTGAAACAAAGATGCTGTCAGATATAGATGACCAGCAAGGCCTTAGGTTTCAGATACCAGTCATCATAGCCTACAAGAACAATCCTTCAATGTCGAACCGAAAAGGCCCCGTTCAGGTGATCAGGGAAGCAATAAGTAGAGCATTGGTGTATTACTACCCTTTGGCAGGTAGGCTCAGAGAAGGGCCTAACAGAAAGCTTATGGTGGATTGCAACGGAAAAGGTGTCTTGTTCGTTGGGGCTAATGCTGACGTTACTCTCGAGGAAATTGGAGATGCTATTCTTGAAGGAATTGTGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001504 GO:0001505 GO:0003333 GO:0003674 GO:0005215 GO:0005310 GO:0005313 GO:0005326 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006835 GO:0006836 GO:0006855 GO:0006865 GO:0006868 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015171 GO:0015172 GO:0015175 GO:0015179 GO:0015180 GO:0015186 GO:0015193 GO:0015194 GO:0015238 GO:0015318 GO:0015711 GO:0015740 GO:0015800 GO:0015801 GO:0015804 GO:0015807 GO:0015808 GO:0015810 GO:0015813 GO:0015824 GO:0015825 GO:0015827 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0022858 GO:0022889 GO:0032328 GO:0032329 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0043207 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051938 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0089718 GO:0098655 GO:0098656 GO:0098657 GO:0098712 GO:0098739 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

126

Amino Acids

13.91

Weight (kDa)

8.66

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	10 - 118	2.9e-24	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49630
fragaria_vesca	FvH4_5g33530
malus_domestica	MD08G1211100.v1.1
prunus_persica	Prupe.1G543000_v2.0.a1
pyrus_communis	pycom15g35510
rosa_chinensis	RchiOBHm_Chr7g0232341
rosa_laevigata	RLG00000001355
rosa_multiflora	Rmu_sc0011325.1_g000003
rosa_roxburghii	Rroxscaffold_3G00228450
rosa_rugosa	Rorug07G0272700
rosa_samantha	Rh7AG426600
rosa_wichuraiana	Rw7G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	193, 245
AgsI	TTSAA	2 cut(s)	168, 365
AluBI	AGCT	1 cut(s)	277
AluI	AGCT	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	4 cut(s)	68, 118, 184, 263
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	2 cut(s)	185, 263
AsuHPI	GGTGA	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	338
AxyI	CCTNAGG	1 cut(s)	122
BclI	TGATCA	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	185, 263
BmiI	GGNNCC	1 cut(s)	187
BmsI	GCATC	2 cut(s)	81, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 245
Bse1I	ACTGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	193, 245
BseMII	CTCAG	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	4 cut(s)	70, 120, 186, 265
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	193, 245
BsnI	GGCC	4 cut(s)	70, 120, 186, 265
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	198
BspANI	GGCC	4 cut(s)	70, 120, 186, 265
BspCNI	CTCAG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	19, 122, 254
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	122
BsuRI	GGCC	4 cut(s)	70, 120, 186, 265
BveI	ACCTGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	185, 263
CviJI	RGCY	9 cut(s)	46, 70, 120, 149, 186, 253, 265, 277, 320
CviKI_1	RGCY	9 cut(s)	46, 70, 120, 149, 186, 253, 265, 277, 320
DdeI	CTNAG	3 cut(s)	19, 122, 254
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoO109I	RGGNCCY	2 cut(s)	185, 263
FaiI	YATR	4 cut(s)	56, 104, 146, 281
FbaI	TGATCA	1 cut(s)	198
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	4 cut(s)	70, 120, 186, 265
HapII	CCGG	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	275
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	208
Hpy188I	TCNGA	3 cut(s)	100, 132, 257
Hpy188III	TCNNGA	2 cut(s)	338, 362
HpyAV	CCTTC	3 cut(s)	174, 254, 359
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	1 cut(s)	291
HpyF3I	CTNAG	3 cut(s)	19, 122, 254
HpySE526I	ACGT	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	8 cut(s)	14, 56, 75, 125, 150, 179, 187, 231
LweI	GCATC	2 cut(s)	81, 343
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MluCI	AATT	2 cut(s)	345, 369
MnlI	CCTC	2 cut(s)	25, 334
MseI	TTAA	1 cut(s)	33
MspI	CCGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PsiI	TTATAA	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	185, 263
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	2 cut(s)	185, 263
SetI	ASST	7 cut(s)	33, 128, 198, 250, 279, 304, 333
SfaNI	GCATC	2 cut(s)	81, 343
Sfr274I	CTCGAG	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	345, 369
SseBI	AGGCCT	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	120
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	37, 173, 339
TasI	AATT	2 cut(s)	345, 369
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TspGWI	ACGGA	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.