Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0022389

Physical Location & Seq

Genomic Coordinates Reverse (-)

29914370 .. 29920283

Gene Structure 5914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1232400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTCACTTCAAAAATAAGAAGGTGTTTGTGAATTTGGTTTCGACGAAGCATATGGACCATATCACAGGGGATAAAATCCCAAAGAGCTTTGTGTTTTCCAGACGCAAGTTGCCTGGTCCTCTGAATCAGCTTCAAGATGATTTGAGAAAACTGATGCTTCCTTACACTGCCCTTAAGCTTAAGGAGAAGAGGCAGAACAATCTTAGAAACATTTTGGTTGTGGTTGGGCCTATGGGGGTTACACATTTCCTCATGTTGTCAAAAACTCCAACTGCGCCATACCTTAGGGTTGCGAGGGCACCTCAAGGCTCAACGATATTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043933 GO:0044085 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

110

Amino Acids

12.43

Weight (kDa)

10.91

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	39 - 107	2.1e-07	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022389)

Species	Orthologous Gene IDs
malus_domestica	MD08G1232400.v1.1
pyrus_communis	pycom04g01110 pycom05g10150 pycom10g00690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	34
AflII	CTTAAG	2 cut(s)	176, 182
AgsI	TTSAA	2 cut(s)	13, 137
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	3 cut(s)	90, 133, 181
AluI	AGCT	3 cut(s)	90, 133, 181
AoxI	GGCC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	3 cut(s)	58, 119, 230
AvaII	GGWCC	2 cut(s)	58, 119
AxyI	CCTNAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	117
BfrI	CTTAAG	2 cut(s)	176, 182
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	2 cut(s)	58, 119
BmgT120I	GGNCC	3 cut(s)	58, 119, 230
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	147
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpuEI	CTTGAG	1 cut(s)	291
Bse21I	CCTNAGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	304
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	301
BspTI	CTTAAG	2 cut(s)	176, 182
Bst2UI	CCWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	185
BstAFI	CTTAAG	2 cut(s)	176, 182
BstDEI	CTNAG	2 cut(s)	206, 287
BstHHI	GCGC	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
CfoI	GCGC	1 cut(s)	280
Cfr13I	GGNCC	3 cut(s)	58, 119, 230
CseI	GACGC	1 cut(s)	114
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	6 cut(s)	5, 90, 133, 181, 232, 312
CviKI_1	RGCY	6 cut(s)	5, 90, 133, 181, 232, 312
DdeI	CTNAG	2 cut(s)	206, 287
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	58, 119
Eco81I	CCTNAGG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	115
FaeI	CATG	1 cut(s)	259
FaiI	YATR	7 cut(s)	54, 56, 63, 236, 257, 283, 328
FatI	CATG	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	232
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	102, 137
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	206, 287
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	278
LpnPI	CCDG	4 cut(s)	54, 102, 115, 129
LweI	GCATC	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	132, 186, 263, 291, 315
MseI	TTAA	2 cut(s)	177, 183
MspCI	CTTAAG	2 cut(s)	176, 182
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	54
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	3 cut(s)	58, 119, 230
SaqAI	TTAA	2 cut(s)	177, 183
Sau96I	GGNCC	3 cut(s)	58, 119, 230
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	6 cut(s)	27, 92, 135, 183, 288, 307
SfaNI	GCATC	1 cut(s)	147
SgeI	CNNG	9 cut(s)	81, 114, 121, 128, 129, 149, 268, 309, 320
SinI	GGWCC	2 cut(s)	58, 119
SmlI	CTYRAG	3 cut(s)	176, 182, 306
SmoI	CTYRAG	3 cut(s)	176, 182, 306
Sse9I	AATT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	115
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	177, 183
Tru9I	TTAA	2 cut(s)	177, 183
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	175
Vha464I	CTTAAG	2 cut(s)	176, 182
VpaK11BI	GGWCC	2 cut(s)	58, 119
XapI	RAATTY	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.