Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0022389

Physical Location & Seq

Genomic Coordinates Forward (+)

1015775 .. 1016472

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01110.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTGCCTTAAAAAATAAGAAGAACGTGTTTGTGAAGTCAGTTTCGACAAAGAAGCAGGCTAATATGGACCATATCACAGGGGATAAAATCCCAAGGAGGTTTGTGTTTTCCAGATGCAAGTTGCCTGGTCCTCTGAAGCAGCTTCAAGCTGATTTGAGGAAACTGGTGCTTCCCTACACTGCCTTTAAGCTTAAGGAGAAGAGGCGGAACAATCTTAGAGACTTTTTTAATGTGGCTGGGCCTATGGGGGTTACACATTTCCTCATGTTGTCGAAAACTCCAACTGCGCCATACCTTAGGGGTGCAGATCCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0043933 GO:0044085 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

107

Amino Acids

12.07

Weight (kDa)

10.59

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022389)

Species	Orthologous Gene IDs
malus_domestica	MD08G1232400.v1.1
pyrus_communis	pycom04g01110 pycom05g10150 pycom10g00690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	158
AflII	CTTAAG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	3 cut(s)	145, 152, 193
AluI	AGCT	3 cut(s)	145, 152, 193
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	305
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	5, 142
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	3 cut(s)	70, 131, 242
AvaII	GGWCC	2 cut(s)	70, 131
AxyI	CCTNAGG	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	6, 143
BlsI	GCNGC	2 cut(s)	7, 144
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	2 cut(s)	70, 131
BmgT120I	GGNCC	3 cut(s)	70, 131, 242
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	171
Bse21I	CCTNAGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	244
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	305
BspTI	CTTAAG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	218, 299
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	3 cut(s)	70, 131, 242
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	7 cut(s)	5, 62, 145, 152, 193, 239, 244
CviKI_1	RGCY	7 cut(s)	5, 62, 145, 152, 193, 239, 244
DdeI	CTNAG	2 cut(s)	218, 299
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	70, 131
Eco57I	CTGAAG	1 cut(s)	158
Eco81I	CCTNAGG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	1 cut(s)	271
FaiI	YATR	5 cut(s)	68, 75, 248, 269, 295
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	6, 143
Fsp4HI	GCNGC	2 cut(s)	6, 143
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	2 cut(s)	6, 143
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HindIII	AAGCTT	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	114, 314
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	120, 308
HpyF3I	CTNAG	2 cut(s)	218, 299
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	7 cut(s)	44, 66, 114, 127, 141, 152, 225
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	1 cut(s)	107
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	34, 214
MflI	RGATCY	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	5 cut(s)	93, 144, 153, 198, 275
MseI	TTAA	4 cut(s)	11, 189, 195, 231
MspCI	CTTAAG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	7, 144
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	70, 131, 242
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	310
SaqAI	TTAA	4 cut(s)	11, 189, 195, 231
SatI	GCNGC	2 cut(s)	6, 143
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	3 cut(s)	70, 131, 242
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	6 cut(s)	30, 104, 147, 154, 195, 300
SfaNI	GCATC	1 cut(s)	107
SinI	GGWCC	2 cut(s)	70, 131
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	47, 275
Tru1I	TTAA	4 cut(s)	11, 189, 195, 231
Tru9I	TTAA	4 cut(s)	11, 189, 195, 231
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	2 cut(s)	5, 142
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	70, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.