Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0023599

Physical Location & Seq

Genomic Coordinates Reverse (-)

441273 .. 442223

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1005900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGGCAGAGGATGAGATGTATCATGACTTCCTAACTCAGACGAACACACCTCCCCCTCCACCTCCTTATCCTCATCATCCCAACTCTTCTCTTTCTTCTTCTCCCTCCCCCTTCCTTTTCAATAACCTCCTCTCTTCCTCTTCTTCCCCCGGACTTCCCCTGCCCCCCACTAAAACGCCTTCGTCCCACCAAATTCCTACCCATCCTCAGCCCCATACCACCCCCCACGCTCGCCGAGCTTCTTCTTCCACCGCCGCTGCAAATCGCATCTTCCAATGCCATTACTGCTCCCGCAAATTCTACACCTCCCAAGCCCTCGGCGGCCACCAAAACGCCCACAAGCGGGAGAGAGCCGCCGCTCGCAGGTCTCTTATTGGCGCCGGCGGAGGTGGCGGCTGCTCCTCCGTTCCCACCCACTCTCCTCACCACCCTCATCATGTCCCTGCTCTCAACGTCTCACCTCCCCCTTCTCAATATCAGATCATGCCCATCAACGCGCCACGTCAGCATCATGATACTGATGACCATGCTCAACAATATTCAACTGGGCCTCACCAATACCATCAGCTCCGACAGAGCCACCACCACCCGCAGCCAGAGGCAGCCGTACACGACAGCAGCAGCTGCTTTTTAATGGAGATGGAGCACATCATGCAGCAGGACAACCAGCCACCTTACTATTGGGCGGTGGACCTTTCCAACATCAACACTACTAACCACCACCACCACCACCACCCCCACATCCCTGCCGCCGCCTCCACTTGCTCTCTTCCCCAGATGATTGACGGCCCCACCACCTCCGAGCTGCCTCAGCCCCTCTTCTCACGTGCACCCCCTTCTTCCCACACCCATCAATATTATCATCGCCATCCTCAGGATGCCACTGCCGCTCATCCTCCTCGTGACAACCCCACTCTTCATAGCCTTGACCTCTCCCTCCGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

35.06

Weight (kDa)

6.97

Isoelectric Point (pI)

71.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14010
malus_domestica	MD09G1005900.v1.1
prunus_persica	Prupe.3G311100_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	380
AccBSI	CCGCTC	2 cut(s)	362, 893
AccII	CGCG	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	195, 299
AcvI	CACGTG	1 cut(s)	830
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	1 cut(s)	612
AfiI	CCNNNNNNNGG	4 cut(s)	345, 346, 366, 877
AgsI	TTSAA	2 cut(s)	124, 546
AjiI	CACGTC	1 cut(s)	506
AluBI	AGCT	4 cut(s)	242, 571, 627, 808
AluI	AGCT	4 cut(s)	242, 571, 627, 808
Alw21I	GWGCWC	2 cut(s)	651, 835
Alw26I	GTCTC	2 cut(s)	375, 463
Alw44I	GTGCAC	1 cut(s)	831
AlwNI	CAGNNNCTG	1 cut(s)	627
AoxI	GGCC	3 cut(s)	325, 551, 790
ApaLI	GTGCAC	1 cut(s)	831
ApeKI	GCWGC	9 cut(s)	260, 399, 595, 605, 621, 624, 627, 658, 808
ApoI	RAATTY	2 cut(s)	195, 299
AspLEI	GCGC	2 cut(s)	383, 502
AspS9I	GGNCC	3 cut(s)	551, 694, 791
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	3 cut(s)	419, 453, 548
AvaII	GGWCC	1 cut(s)	694
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	835
BanI	GGYRCC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BauI	CACGAG	1 cut(s)	903
BbrPI	CACGTG	1 cut(s)	830
Bbv12I	GWGCWC	2 cut(s)	651, 835
BbvCI	CCTCAGC	2 cut(s)	210, 813
BbvI	GCAGC	9 cut(s)	247, 386, 607, 614, 617, 633, 636, 670, 795
BccI	CCATC	6 cut(s)	213, 500, 573, 637, 861, 879
BceAI	ACGGC	2 cut(s)	593, 805
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	375, 463
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	1 cut(s)	694
BmgBI	CACGTC	1 cut(s)	506
BmgT120I	GGNCC	3 cut(s)	551, 694, 791
BmiI	GGNNCC	2 cut(s)	382, 793
BmrFI	CCNGG	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	558
BmsI	GCATC	3 cut(s)	279, 520, 871
BmuI	ACTGGG	1 cut(s)	558
Bpu10I	CCTNAGC	2 cut(s)	210, 813
BpuMI	CCSGG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	151, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	406, 436
Bsc4I	CCNNNNNNNGG	4 cut(s)	345, 346, 366, 877
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	553
Bse21I	CCTNAGG	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	151, 319
BseGI	GGATG	7 cut(s)	19, 79, 205, 744, 871, 886, 895
BseLI	CCNNNNNNNGG	4 cut(s)	345, 346, 366, 877
BseMII	CTCAG	4 cut(s)	53, 224, 827, 890
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	4 cut(s)	122, 394, 414, 891
BseSI	GKGCMC	1 cut(s)	835
BseXI	GCAGC	9 cut(s)	247, 386, 607, 614, 617, 633, 636, 670, 795
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	3 cut(s)	327, 553, 792
BshNI	GGYRCC	1 cut(s)	380
BsiHKAI	GWGCWC	2 cut(s)	651, 835
BsiSI	CCGG	2 cut(s)	153, 384
BslFI	GGGAC	2 cut(s)	172, 428
BslI	CCNNNNNNNGG	4 cut(s)	345, 346, 366, 877
BsmAI	GTCTC	2 cut(s)	375, 463
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	172, 428
BsnI	GGCC	3 cut(s)	327, 553, 792
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	651, 835
Bsp143I	GATC	1 cut(s)	483
BspANI	GGCC	3 cut(s)	327, 553, 792
BspCNI	CTCAG	4 cut(s)	52, 223, 826, 889
BspFNI	CGCG	1 cut(s)	500
BspHI	TCATGA	2 cut(s)	25, 514
BspLI	GGNNCC	2 cut(s)	382, 793
BspMI	ACCTGC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	375
BsrBI	CCGCTC	2 cut(s)	362, 893
BsrFI	RCCGGY	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	151, 319
BssMI	GATC	1 cut(s)	483
BssNI	GRCGYC	1 cut(s)	381
BssSI	CACGAG	1 cut(s)	903
Bst2BI	CACGAG	1 cut(s)	903
Bst6I	CTCTTC	6 cut(s)	94, 142, 148, 777, 827, 924
BstACI	GRCGYC	1 cut(s)	381
BstAPI	GCANNNNNTGC	2 cut(s)	627, 655
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	3 cut(s)	235, 364, 385
BstDEI	CTNAG	4 cut(s)	39, 210, 813, 876
BstF5I	GGATG	7 cut(s)	19, 79, 205, 744, 871, 886, 895
BstFNI	CGCG	1 cut(s)	500
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	383, 502
BstKTI	GATC	1 cut(s)	486
BstMAI	GTCTC	2 cut(s)	375, 463
BstMBI	GATC	1 cut(s)	483
BstMWI	GCNNNNNNNGC	8 cut(s)	239, 288, 393, 508, 627, 655, 814, 890
BstSCI	CCNGG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	835
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	9 cut(s)	247, 386, 607, 614, 617, 633, 636, 670, 795
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	3 cut(s)	327, 553, 792
BtgZI	GCGATG	1 cut(s)	851
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	7 cut(s)	19, 79, 205, 744, 871, 886, 895
BtsI	GCAGTG	1 cut(s)	885
BtsIMutI	CAGTG	1 cut(s)	885
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	3 cut(s)	235, 364, 385
CaiI	CAGNNNCTG	1 cut(s)	627
CciI	TCATGA	2 cut(s)	25, 514
CfoI	GCGC	2 cut(s)	383, 502
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	551, 694, 791
Csp6I	GTAC	1 cut(s)	611
CviAII	CATG	6 cut(s)	26, 440, 487, 515, 530, 655
CviQI	GTAC	1 cut(s)	611
DdeI	CTNAG	4 cut(s)	39, 210, 813, 876
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	1 cut(s)	485
DpnII	GATC	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	6 cut(s)	94, 142, 148, 777, 827, 924
EarI	CTCTTC	6 cut(s)	94, 142, 148, 777, 827, 924
EciI	GGCGGA	2 cut(s)	402, 932
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	694
Eco72I	CACGTG	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	876
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	6 cut(s)	29, 443, 490, 518, 533, 658
FaiI	YATR	8 cut(s)	27, 219, 441, 488, 516, 531, 656, 924
FaqI	GGGAC	2 cut(s)	172, 428
FatI	CATG	6 cut(s)	25, 439, 486, 514, 529, 654
FauI	CCCGC	3 cut(s)	302, 339, 600
FokI	GGATG	7 cut(s)	26, 66, 192, 731, 858, 882, 893
GlaI	GCGC	2 cut(s)	382, 501
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	327, 553, 792
HapII	CCGG	2 cut(s)	153, 384
HhaI	GCGC	2 cut(s)	383, 502
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	6 cut(s)	29, 443, 490, 518, 533, 658
Hin6I	GCGC	2 cut(s)	381, 500
HinP1I	GCGC	2 cut(s)	381, 500
HpaII	CCGG	2 cut(s)	153, 384
HphI	GGTGA	3 cut(s)	419, 453, 548
Hpy166II	GTNNAC	3 cut(s)	613, 694, 833
Hpy188I	TCNGA	4 cut(s)	42, 483, 575, 805
Hpy188III	TCNNGA	4 cut(s)	26, 515, 878, 905
Hpy8I	GTNNAC	3 cut(s)	613, 694, 833
HpyAV	CCTTC	4 cut(s)	124, 192, 480, 849
HpyCH4IV	ACGT	3 cut(s)	456, 505, 829
HpyCH4V	TGCA	3 cut(s)	263, 658, 833
HpyF10VI	GCNNNNNNNGC	8 cut(s)	239, 288, 393, 508, 627, 655, 814, 890
HpyF3I	CTNAG	4 cut(s)	39, 210, 813, 876
HpySE526I	ACGT	3 cut(s)	456, 505, 829
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	6 cut(s)	29, 443, 490, 518, 533, 658
HspAI	GCGC	2 cut(s)	381, 500
KasI	GGCGCC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	483
LmnI	GCTCC	4 cut(s)	296, 407, 576, 646
Lsp1109I	GCAGC	9 cut(s)	247, 386, 607, 614, 617, 633, 636, 670, 795
LweI	GCATC	3 cut(s)	279, 520, 871
MaeII	ACGT	3 cut(s)	456, 505, 829
MaeIII	GTNAC	1 cut(s)	905
MalI	GATC	1 cut(s)	485
MbiI	CCGCTC	2 cut(s)	362, 893
MboI	GATC	1 cut(s)	483
MhlI	GDGCHC	2 cut(s)	651, 835
MluCI	AATT	2 cut(s)	195, 299
Mly113I	GGCGCC	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	598, 726
MreI	CGCCGGCG	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	383
MseI	TTAA	2 cut(s)	635, 949
MspA1I	CMGCKG	2 cut(s)	260, 627
MspI	CCGG	2 cut(s)	153, 384
MspR9I	CCNGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	8 cut(s)	239, 288, 393, 508, 627, 655, 814, 890
NaeI	GCCGGC	1 cut(s)	385
NarI	GGCGCC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	483
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	6 cut(s)	29, 443, 490, 518, 533, 658
NlaIV	GGNNCC	2 cut(s)	382, 793
NmeAIII	GCCGAG	2 cut(s)	263, 300
NmuCI	GTSAC	1 cut(s)	905
PagI	TCATGA	2 cut(s)	25, 514
PdiI	GCCGGC	1 cut(s)	385
PluTI	GGCGCC	1 cut(s)	384
PmaCI	CACGTG	1 cut(s)	830
PmlI	CACGTG	1 cut(s)	830
Ppu21I	YACGTR	1 cut(s)	830
PspCI	CACGTG	1 cut(s)	830
PspN4I	GGNNCC	2 cut(s)	382, 793
PspPI	GGNCC	3 cut(s)	551, 694, 791
PstNI	CAGNNNCTG	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	627
RsaI	GTAC	1 cut(s)	612
RsaNI	GTAC	1 cut(s)	611
SaqAI	TTAA	2 cut(s)	635, 949
Sau3AI	GATC	1 cut(s)	483
Sau96I	GGNCC	3 cut(s)	551, 694, 791
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	2 cut(s)	651, 835
SfaNI	GCATC	3 cut(s)	279, 520, 871
SfoI	GGCGCC	1 cut(s)	382
SgrAI	CRCCGGYG	1 cut(s)	383
SinI	GGWCC	1 cut(s)	694
Sse9I	AATT	2 cut(s)	195, 299
SspDI	GGCGCC	1 cut(s)	380
SspI	AATATT	2 cut(s)	542, 860
StyD4I	CCNGG	1 cut(s)	151
TaiI	ACGT	3 cut(s)	459, 508, 832
TasI	AATT	2 cut(s)	195, 299
TauI	GCSGC	8 cut(s)	260, 327, 359, 362, 399, 755, 758, 893
Tru1I	TTAA	2 cut(s)	635, 949
Tru9I	TTAA	2 cut(s)	635, 949
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	9 cut(s)	260, 399, 595, 605, 621, 624, 627, 658, 808
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	1 cut(s)	911
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	892
VneI	GTGCAC	1 cut(s)	831
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	2 cut(s)	195, 299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.