Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0023599

Physical Location & Seq

Genomic Coordinates Forward (+)

26999875 .. 27001422

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G311100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAGGCAGACGAAGGGATATATCATGACTTCCTAGACCAGAAGAACCCACCTCATCATATTTCTTCTTCCTCTCATGTGAACCTAACATCCCCAATCATCTCATCACCATCATCTTCACCAACACCAAGAGAACCCATGGGCGTGCCCACAAATAAAAGGTCCCAACATCAGGCAACCACTGGCCACGCTGGTTCTTCCTTATCGGGTGGACCAAATCGCCTGTTCCCATGCCGCTATTGTTCCCGCCAGTTTTACACCTCTCAAGCACTTGGAGGACACCAGAACGCCCACAAGCGAGAGAGAGCCGCTGCTCGCAGATCAGTTGTAGCCGGCGGCAGCTACCCCACCGGGGCCACCTACTCTCCTCACCACCATGCGCCCTTGAATGCCCCACCACCACCACCACCTCCTCCTCCTCCTCCTTCTCATCATCATTTGCCGTTGAATGTGCCACATCATCATCCTCATGACCAGATTCAGCATCATGATGATGACCCTACTCAGCATTTTCCGCCTCATCAATATCAAGTATTTCACCAGGCCCAGAATCACCAGCAGCAGCAGCCACGGCTTCTTGACCCACCAGCCGTACCCAACATGAGCAGCAACAGTTACAGCAGCAGCTTCTTTATGGACATGGATATGAAGCATAATATTATGCAGCAGCAGCAGCAGGACAACCAACCACCACCTTTTTATTGGGGGGTCGACCTCACCAACCACCACCTCATCACCGCCTCCTCCACTTCCTCTCTTCCTCTTCCTCTTCCCCTTCCCCTTCATGGCCCCACTGAAGGTATCCCCCCTCAGCCTCAACCTCTCTCACCTGCACCTCCTACCCATCACTATCATCTTCATCCTCAGAATGCCGTCGCTCCTCATGACCACACTCACAGCCTTGACCTCTCCCTCCGCCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009909 GO:0010022 GO:0010073 GO:0010468 GO:0010556 GO:0010582 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048507 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

34.01

Weight (kDa)

7.08

Isoelectric Point (pI)

71.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14010
malus_domestica	MD09G1005900.v1.1
prunus_persica	Prupe.3G311100_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	838
Acc36I	ACCTGC	1 cut(s)	838
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	7 cut(s)	235, 247, 309, 336, 515, 738, 916
AcoI	YGGCCR	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	4 cut(s)	172, 352, 785, 797
AgsI	TTSAA	2 cut(s)	388, 448
AjnI	CCWGG	1 cut(s)	540
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	342, 627
AluI	AGCT	2 cut(s)	342, 627
AoxI	GGCC	4 cut(s)	184, 354, 543, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	5 cut(s)	162, 212, 354, 544, 788
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	8 cut(s)	99, 111, 362, 530, 545, 709, 727, 819
AvaII	GGWCC	2 cut(s)	162, 212
BaeGI	GKGCMC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	186
BbvCI	CCTCAGC	1 cut(s)	810
BccI	CCATC	2 cut(s)	118, 852
BceAI	ACGGC	4 cut(s)	427, 575, 587, 857
BciT130I	CCWGG	1 cut(s)	542
BciVI	GTATCC	1 cut(s)	812
BcnI	CCSGG	1 cut(s)	352
BfaI	CTAG	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	838
BfuI	GTATCC	1 cut(s)	812
Bme1390I	CCNGG	2 cut(s)	352, 542
Bme18I	GGWCC	2 cut(s)	162, 212
BmgT120I	GGNCC	5 cut(s)	162, 212, 354, 544, 788
BmiI	GGNNCC	3 cut(s)	164, 355, 790
BmrFI	CCNGG	2 cut(s)	352, 542
BmsI	GCATC	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	810
BpuEI	CTTGAG	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	352
BsaJI	CCNNGG	3 cut(s)	138, 351, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	172, 352, 785, 797
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	187, 250
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	138, 351, 569
BseGI	GGATG	3 cut(s)	89, 463, 859
BseLI	CCNNNNNNNGG	4 cut(s)	172, 352, 785, 797
BseMII	CTCAG	3 cut(s)	518, 824, 878
BseNI	ACTGG	2 cut(s)	187, 250
BseRI	GAGGAG	7 cut(s)	357, 402, 405, 408, 411, 733, 870
BseSI	GKGCMC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	4 cut(s)	186, 356, 545, 789
BsiSI	CCGG	2 cut(s)	333, 351
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	4 cut(s)	172, 352, 785, 797
BsmFI	GGGAC	1 cut(s)	148
BsmI	GAATGC	2 cut(s)	394, 874
BsnI	GGCC	4 cut(s)	186, 356, 545, 789
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	320
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	7 cut(s)	235, 247, 309, 336, 515, 738, 916
BspANI	GGCC	4 cut(s)	186, 356, 545, 789
BspCNI	CTCAG	3 cut(s)	517, 823, 877
BspHI	TCATGA	4 cut(s)	25, 469, 487, 883
BspLI	GGNNCC	3 cut(s)	164, 355, 790
BspMI	ACCTGC	1 cut(s)	838
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	187, 250
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	138, 351, 569
BssMI	GATC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	1 cut(s)	614
Bst6I	CTCTTC	3 cut(s)	762, 768, 774
BstC8I	GCNNGC	3 cut(s)	146, 316, 334
BstDEI	CTNAG	3 cut(s)	504, 810, 864
BstDSI	CCRYGG	2 cut(s)	138, 569
BstF5I	GGATG	3 cut(s)	89, 463, 859
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	5 cut(s)	514, 565, 571, 670, 673
BstNI	CCWGG	1 cut(s)	542
BstSCI	CCNGG	2 cut(s)	350, 540
BstSLI	GKGCMC	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	4 cut(s)	186, 356, 545, 789
BtgI	CCRYGG	2 cut(s)	138, 569
BtsCI	GGATG	3 cut(s)	89, 463, 859
BtsIMutI	CAGTG	2 cut(s)	180, 792
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	3 cut(s)	146, 316, 334
CciI	TCATGA	4 cut(s)	25, 469, 487, 883
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	5 cut(s)	162, 212, 354, 544, 788
Csp6I	GTAC	1 cut(s)	593
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	3 cut(s)	504, 810, 864
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	3 cut(s)	762, 768, 774
EarI	CTCTTC	3 cut(s)	762, 768, 774
EciI	GGCGGA	2 cut(s)	504, 905
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	2 cut(s)	162, 212
Eco57I	CTGAAG	1 cut(s)	816
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaqI	GGGAC	1 cut(s)	148
FauI	CCCGC	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	711
FokI	GGATG	3 cut(s)	76, 450, 846
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	186, 356, 545, 789
HapII	CCGG	2 cut(s)	333, 351
HhaI	GCGC	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HinfI	GANTC	2 cut(s)	478, 550
HpaII	CCGG	2 cut(s)	333, 351
HphI	GGTGA	8 cut(s)	99, 111, 362, 530, 545, 709, 727, 819
Hpy166II	GTNNAC	3 cut(s)	82, 212, 712
Hpy188I	TCNGA	1 cut(s)	867
Hpy188III	TCNNGA	5 cut(s)	26, 470, 488, 578, 884
Hpy8I	GTNNAC	3 cut(s)	82, 212, 712
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	5 cut(s)	8, 435, 785, 791, 791
HpyCH4III	ACNGT	1 cut(s)	614
HpyCH4V	TGCA	2 cut(s)	664, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	514, 565, 571, 670, 673
HpyF3I	CTNAG	3 cut(s)	504, 810, 864
HspAI	GCGC	1 cut(s)	380
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	883
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MboII	GAAGA	9 cut(s)	55, 57, 60, 108, 189, 749, 755, 761, 848
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	1 cut(s)	186
MluNI	TGGCCA	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	186
MslI	CAYNNNNRTG	6 cut(s)	143, 375, 468, 489, 492, 644
Msp20I	TGGCCA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	2 cut(s)	333, 351
MspR9I	CCNGG	2 cut(s)	352, 542
Mva1269I	GAATGC	2 cut(s)	394, 874
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	5 cut(s)	514, 565, 571, 670, 673
NaeI	GCCGGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	352
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	320
NgoMIV	GCCGGC	1 cut(s)	332
NlaIV	GGNNCC	3 cut(s)	164, 355, 790
PagI	TCATGA	4 cut(s)	25, 469, 487, 883
PaqCI	CACCTGC	1 cut(s)	838
PctI	GAATGC	2 cut(s)	394, 874
PdiI	GCCGGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	478, 550
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	164, 355, 790
PspPI	GGNCC	5 cut(s)	162, 212, 354, 544, 788
PspPPI	RGGWCCY	1 cut(s)	162
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	6 cut(s)	143, 375, 468, 489, 492, 644
SalI	GTCGAC	1 cut(s)	710
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	5 cut(s)	162, 212, 354, 544, 788
ScrFI	CCNGG	2 cut(s)	352, 542
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	493
SinI	GGWCC	2 cut(s)	162, 212
SmiMI	CAYNNNNRTG	6 cut(s)	143, 375, 468, 489, 492, 644
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SsiI	CCGC	7 cut(s)	235, 247, 309, 336, 515, 738, 916
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	350, 540
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	614
TaqI	TCGA	1 cut(s)	711
TauI	GCSGC	3 cut(s)	237, 311, 339
TfiI	GAWTC	2 cut(s)	478, 550
TscAI	CASTG	2 cut(s)	187, 799
TspDTI	ATGAA	4 cut(s)	17, 662, 773, 848
TspRI	CASTG	2 cut(s)	187, 799
VpaK11BI	GGWCC	2 cut(s)	162, 212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	699
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.