MD09G1016400.v1.1

lysine histidine transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0024316
Physical Location & Seq
Reverse (-)
1009933 .. 1010769
837 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1016400.v1.1.491

Sequence Viewer

Length: 270 bp
ATGGCTCATCATTACAGCAAACTTGTTCGTTGTCGTCCATGTCATTGGCAGTTATCAGCCTTCACAATGTTCATCACCATTACTTTCCCCTTCTTTGGTGGTCTTCTAGGATTCTTTGGAGGATTTGCTTTTTCCCCGACTACATATTTTCTCCCTTGCATTATGTGGCTTGCCATCAAGAAACCGTGCAAGTTTAGCCTATCATGGATTATTAACTGGGTACATACGTTTGTTCAAATTCTGTTGTTACTGTTTCCCGCACTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

90

Amino Acids

10.37

Weight (kDa)

9.45

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 19 - 83 3.9e-11 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024316)

Species Orthologous Gene IDs
malus_domestica MD09G1016400.v1.1
pyrus_communis pycom13g09710
rosa_chinensis RchiOBHm_Chr6g0256391

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 236
ApoI RAATTY 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 67
BaeI ACNNNNGTAYC 2 cut(s) 212, 245
BbsI GAAGAC 1 cut(s) 95
BccI CCATC 1 cut(s) 182
BfaI CTAG 1 cut(s) 107
BmrI ACTGGG 1 cut(s) 226
BmuI ACTGGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 95
BspACI CCGC 1 cut(s) 258
BsrI ACTGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 186, 252
BstC8I GCNNGC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 221
CviAII CATG 2 cut(s) 39, 204
CviJI RGCY 4 cut(s) 5, 59, 169, 198
CviKI_1 RGCY 4 cut(s) 5, 59, 169, 198
CviQI GTAC 1 cut(s) 221
FaeI CATG 2 cut(s) 42, 207
FaiI YATR 5 cut(s) 40, 145, 164, 205, 225
FatI CATG 2 cut(s) 38, 203
FauI CCCGC 1 cut(s) 265
FspBI CTAG 1 cut(s) 107
Hin1II CATG 2 cut(s) 42, 207
HinfI GANTC 1 cut(s) 111
HphI GGTGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 70, 100
HpyCH4III ACNGT 2 cut(s) 186, 252
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 159, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 42, 207
LpnPI CCDG 1 cut(s) 202
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 1 cut(s) 246
MboII GAAGA 1 cut(s) 95
MluCI AATT 1 cut(s) 237
MnlI CCTC 1 cut(s) 113
MseI TTAA 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 195
NlaIII CATG 2 cut(s) 42, 207
PfeI GAWTC 1 cut(s) 111
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 213
SetI ASST 1 cut(s) 230
Sse9I AATT 1 cut(s) 237
SsiI CCGC 1 cut(s) 258
SspMI CTAG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 186, 252
TaiI ACGT 1 cut(s) 230
TasI AATT 1 cut(s) 237
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 61
XapI RAATTY 1 cut(s) 237
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.