Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0024316

Physical Location & Seq

Genomic Coordinates Forward (+)

6498745 .. 6499484

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g09710.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTTGTTGTGATCCATGTCATTGGAAGCTACCAAGTTTTCGCAATGGGAGTTTTTGACATGGTTGAAACTTTTCTCGTCACGAAAATGAACTTTGAGCCTTCTTTCATCCTTCGCTTCGTTACTCGCACGACATATGTTGCATTTACCATGGTCGTCGGTATGGCCATCCCTTTCTTTGGTGGCCTTCTCGGATTCTTTGGAGGATTTGCTTTTGCCCCAACTACATACTTCCTTCCCTGCATCATGTGGCTCGCCATCTACAAACCGAGAGTTTTCAGTCTATCTTGGTTCATAAACTGGATATGCATTATACTGGGAGTTACCCTGATGATTCTAGCACCCATCGGTGCCCTACGGAGTATCATCTTGCAAGCGAAAACCTACGAATTCTTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

9.1

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024316)

Species	Orthologous Gene IDs
malus_domestica	MD09G1016400.v1.1
pyrus_communis	pycom13g09710
rosa_chinensis	RchiOBHm_Chr6g0256391

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	68
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
AlwI	GGATC	1 cut(s)	7
AoxI	GGCC	2 cut(s)	165, 184
ApoI	RAATTY	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	72
BaeGI	GKGCMC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	350
BccI	CCATC	3 cut(s)	176, 266, 353
BfaI	CTAG	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	352
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	305, 321
Bse3DI	GCAATG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	108, 168
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	305, 321
BseSI	GKGCMC	1 cut(s)	355
BshFI	GGCC	2 cut(s)	167, 186
BshNI	GGYRCC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	179
BsnI	GGCC	2 cut(s)	167, 186
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	167, 186
BspLI	GGNNCC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	7
BspT107I	GGYRCC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	305, 321
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	255, 375
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	108, 168
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	167, 186
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	108, 168
Cac8I	GCNNGC	2 cut(s)	255, 375
CviAII	CATG	4 cut(s)	17, 61, 151, 247
CviJI	RGCY	5 cut(s)	30, 100, 167, 186, 253
CviKI_1	RGCY	5 cut(s)	30, 100, 167, 186, 253
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	20, 64, 154, 250
FatI	CATG	4 cut(s)	16, 60, 150, 246
FauNDI	CATATG	1 cut(s)	136
FokI	GGATG	2 cut(s)	95, 155
FspBI	CTAG	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	167, 186
Hin1II	CATG	4 cut(s)	20, 64, 154, 250
HinfI	GANTC	2 cut(s)	195, 334
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	4 cut(s)	111, 122, 197, 245
HpyCH4V	TGCA	4 cut(s)	143, 243, 309, 373
Hsp92II	CATG	4 cut(s)	20, 64, 154, 250
Kzo9I	GATC	1 cut(s)	12
LpnPI	CCDG	4 cut(s)	253, 286, 302, 341
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	3 cut(s)	79, 121, 322
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	1 cut(s)	389
MluNI	TGGCCA	1 cut(s)	167
MnlI	CCTC	1 cut(s)	197
Mox20I	TGGCCA	1 cut(s)	167
Mph1103I	ATGCAT	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	1 cut(s)	400
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	4 cut(s)	20, 64, 154, 250
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	79
NsiI	ATGCAT	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	195, 334
PspN4I	GGNNCC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	400
Sau3AI	GATC	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	2 cut(s)	32, 386
SfaNI	GCATC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	389
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	150
TasI	AATT	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	195, 334
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	97, 104, 283
TspGWI	ACGGA	1 cut(s)	373
XapI	RAATTY	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.