MD09G1109100.v1.1

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
8074851 .. 8076311
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1109100.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGTGTTGGCGGAATTAGGAGGGAGCATATCCCGTGCCCTCCAGCAGATGATCAATGCGACGGTGGTCGACGAGAAGGTCCTGAACGACTGCCTCAACGAAATCAGTCGCGCTCTGCTACAGTCCGACGTCCAATTCAGTCTCGTTCGCGACATGCAGATCAACGTTAAAAAGAATGTCAATCTGTCCGATCTCGCTGCCGGTCACAACAAGCGCAAGATCATTCAGCAAGCCGTGTTCGATCAACTCTGCCAAATGCTGCAGGATCCATCGGGGAAACCCGATCAGCTTGTGCCGAAAAAAGGGAAGAAACCGAGCCAAGTTGTAATGTTTGTTGGTTTACAAGGGTCTGGAAAAACCACAACGTGTACAAAATACGCGTATTATCATAAGAACAAAGGCTGGAAACCTGCCTTAGTTTGTGCAGACACATTCCGAGCTGGCGCTTTCGATCAGCTCAAGCAAAACGCCGCCAAGGCTAAGGTTCCGTTTTATGGAAGTTACACAGAGACGGACCCTGTGAAAATTGCGGTCGAAGGTGTGGAGAGGTTAAAAAACGATCAGAGCAATAGTTTTGATCTCATAATTGTTGATACTAGTGGGAGGCACAAGCAAGAAGCTGCTCTTTCCGAAGAGATGCGTCAACTTTCCGAAGCAATCAGTCCCGACCTTGTTGTGTTTGTTATGGATGCAAGTATCGGACAATCTGCATTTCATCAAGCTCAAGCGTTTAAGCAAAGCGTTGCGGTTGGAGCTGTTATTGTAACGAAAATGGACGGTCACGCAAAGGGCGGCGGTACACTCAGTGCTGTTGCAGCGACAAAGAGTCCTGTTATATTTATCGGAACAGGAGAGCACACGGATCAGTTGGAAGCCTTCGATGTGAAACCCTTTGTCCGGCGTCTGTTAGGCATGGGGGACTTGCCTGGACTTGCGAACAAGATTCGCGAAGCTGTTCCGATGGATCAACACGAAGACATATTGGAAAATATTTTACAGGGCGGATTTACGATAAGGACCATGCAAGTGTTGTTTCAGACCAAGCTAAAACTCGGCACACCTAACCAGCTCGCTTCGATGCTCCCTGCAGAATGTACGAGCCGGTTATTTCCTGCAGGACTCGGCGATGATCAGGAAAATCAGAACCAGATGAAGCAGTTCTTGGTCATGATGGATTCAATGACTGCTCAAGAGTTGGACAGCCCGAACCTAAAGGTAAGCGAGTTGCGGAGACAACGGATAGCAAGGGGTTCTGGTCATGAAGTTAGACAGGTAGAAGAGCTGATTGAAGCGTGCAAAGCTGTTAGCAAGAATTTTAGCAAGGGGAGAGCGCTGCTCCGGAGTTTGAACAGCGGCGACATGCGAGCGGTAACCCGGAATATGAGTGGTAATCCGCAGCTGCTCAACCAGGTTGGGGGCATGGGTGGTTTGAGAAGCTTGATGAATCTGGGGAGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

53.13

Weight (kDa)

9.04

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 6 - 83 4.5e-12 SRP54-type protein, helical bundle domain
SRP54 PF00448 107 - 304 2.4e-73 SRP54-type protein, GTPase domain
cobW PF02492 108 - 261 4.3e-07 CobW/HypB/UreG, nucleotide-binding domain
SRP_SPB PF02978 336 - 437 1.5e-20 Signal peptide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024313)

Species Orthologous Gene IDs
malus_domestica MD09G1109100.v1.1 MD17G1097400.v1.1
pyrus_communis pycom09g03160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1459
AasI GACNNNNNNGTC 1 cut(s) 77
AatII GACGTC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 418
AccBSI CCGCTC 1 cut(s) 1367
AccI GTMKAC 1 cut(s) 69
AccII CGCG 4 cut(s) 111, 150, 380, 948
AccIII TCCGGA 1 cut(s) 1338
AclI AACGTT 1 cut(s) 165
AclWI GGATC 4 cut(s) 260, 273, 870, 972
AcsI RAATTY 1 cut(s) 1312
AcyI GRCGYC 2 cut(s) 129, 901
AdeI CACNNNGTG 2 cut(s) 366, 806
AfaI GTAC 3 cut(s) 370, 799, 1096
AfeI AGCGCT 1 cut(s) 1332
AfiI CCNNNNNNNGG 4 cut(s) 302, 494, 897, 1414
AflIII ACRYGT 2 cut(s) 365, 378
AgsI TTSAA 3 cut(s) 1179, 1289, 1348
AhdI GACNNNNNGTC 1 cut(s) 825
AhlI ACTAGT 1 cut(s) 596
AjnI CCWGG 2 cut(s) 925, 1407
AjuI GAANNNNNNNTTGG 2 cut(s) 1145, 1177
Alw21I GWGCWC 1 cut(s) 858
Alw26I GTCTC 3 cut(s) 146, 503, 1225
AlwI GGATC 4 cut(s) 260, 273, 870, 972
Aor13HI TCCGGA 1 cut(s) 1338
Aor51HI AGCGCT 1 cut(s) 1332
ApeKI GCWGC 7 cut(s) 197, 259, 620, 815, 1333, 1396, 1399
ApoI RAATTY 1 cut(s) 1312
Asp700I GAANNNNTTC 2 cut(s) 954, 1157
AspLEI GCGC 4 cut(s) 113, 216, 446, 1333
AspS9I GGNCC 3 cut(s) 79, 514, 1017
AsuC2I CCSGG 1 cut(s) 1375
AvaII GGWCC 3 cut(s) 79, 514, 1017
BaeGI GKGCMC 1 cut(s) 40
BamHI GGATCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 981
Bbv12I GWGCWC 1 cut(s) 858
BbvI GCAGC 7 cut(s) 184, 246, 607, 827, 1320, 1386, 1408
BccI CCATC 3 cut(s) 277, 955, 1165
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 2 cut(s) 927, 1409
BclI TGATCA 2 cut(s) 51, 1129
BcnI CCSGG 1 cut(s) 1375
BcoDI GTCTC 3 cut(s) 146, 503, 1225
BcuI ACTAGT 1 cut(s) 596
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 4 cut(s) 119, 260, 1086, 1113
BfoI RGCGCY 2 cut(s) 447, 1334
BfuAI ACCTGC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 476
Bme1390I CCNGG 3 cut(s) 927, 1375, 1409
Bme18I GGWCC 3 cut(s) 79, 514, 1017
BmeRI GACNNNNNGTC 1 cut(s) 825
BmgT120I GGNCC 3 cut(s) 79, 514, 1017
BmiI GGNNCC 3 cut(s) 267, 486, 516
BmrFI CCNGG 3 cut(s) 927, 1375, 1409
BmsI GCATC 3 cut(s) 627, 679, 1068
BoxI GACNNNNGTC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 981
BplI GAGNNNNNCTC 2 cut(s) 1320, 1352
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 3 cut(s) 443, 708, 1173
BpuMI CCSGG 1 cut(s) 1375
BsaHI GRCGYC 2 cut(s) 129, 901
BsaJI CCNNGG 1 cut(s) 474
BsaWI WCCGGW 1 cut(s) 1338
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 494, 897, 1414
Bse118I RCCGGY 2 cut(s) 200, 1101
BseAI TCCGGA 1 cut(s) 1338
BseBI CCWGG 2 cut(s) 927, 1409
BseDI CCNNGG 1 cut(s) 474
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 4 cut(s) 302, 494, 897, 1414
BseMII CTCAG 1 cut(s) 817
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 7 cut(s) 184, 246, 607, 827, 1320, 1386, 1408
BsgI GTGCAG 1 cut(s) 444
Bsh1236I CGCG 4 cut(s) 111, 150, 380, 948
Bsh1285I CGRYCG 1 cut(s) 534
BsiEI CGRYCG 1 cut(s) 534
BsiHKAI GWGCWC 1 cut(s) 858
BsiSI CCGG 5 cut(s) 201, 898, 1102, 1339, 1375
BslFI GGGAC 2 cut(s) 648, 932
BslI CCNNNNNNNGG 4 cut(s) 302, 494, 897, 1414
BsmAI GTCTC 3 cut(s) 146, 503, 1225
BsmBI CGTCTC 1 cut(s) 503
BsmFI GGGAC 2 cut(s) 648, 932
Bsp1286I GDGCHC 2 cut(s) 40, 858
Bsp13I TCCGGA 1 cut(s) 1338
Bsp1407I TGTACA 1 cut(s) 368
Bsp68I TCGCGA 2 cut(s) 150, 948
BspCNI CTCAG 1 cut(s) 816
BspEI TCCGGA 1 cut(s) 1338
BspFNI CGCG 4 cut(s) 111, 150, 380, 948
BspHI TCATGA 2 cut(s) 1167, 1258
BspLI GGNNCC 3 cut(s) 267, 486, 516
BspMAI CTGCAG 3 cut(s) 264, 1090, 1117
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 4 cut(s) 260, 273, 870, 972
BspQI GCTCTTC 1 cut(s) 1272
BsrBI CCGCTC 1 cut(s) 1367
BsrFI RCCGGY 2 cut(s) 200, 1101
BsrGI TGTACA 1 cut(s) 368
BssAI RCCGGY 2 cut(s) 200, 1101
BssECI CCNNGG 1 cut(s) 474
BssNI GRCGYC 2 cut(s) 129, 901
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 927, 1409
Bst4CI ACNGT 3 cut(s) 64, 123, 779
Bst6I CTCTTC 2 cut(s) 627, 1272
BstACI GRCGYC 2 cut(s) 129, 901
BstAUI TGTACA 1 cut(s) 368
BstC8I GCNNGC 5 cut(s) 231, 442, 1071, 1294, 1365
BstDEI CTNAG 3 cut(s) 415, 480, 803
BstEII GGTNACC 1 cut(s) 1369
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 4 cut(s) 111, 150, 380, 948
BstH2I RGCGCY 2 cut(s) 447, 1334
BstHHI GCGC 4 cut(s) 113, 216, 446, 1333
BstMAI GTCTC 3 cut(s) 146, 503, 1225
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 4 cut(s) 476, 752, 815, 1298
BstNI CCWGG 2 cut(s) 927, 1409
BstNSI RCATGY 2 cut(s) 157, 1363
BstPAI GACNNNNGTC 1 cut(s) 65
BstPI GGTNACC 1 cut(s) 1369
BstSCI CCNGG 3 cut(s) 925, 1373, 1407
BstSFI CTRYAG 4 cut(s) 119, 260, 1086, 1113
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 4 cut(s) 111, 150, 380, 948
BstV1I GCAGC 7 cut(s) 184, 246, 607, 827, 1320, 1386, 1408
BstV2I GAAGAC 1 cut(s) 981
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 1140
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 1 cut(s) 811
BtuMI TCGCGA 2 cut(s) 150, 948
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 5 cut(s) 231, 442, 1071, 1294, 1365
CciI TCATGA 2 cut(s) 1167, 1258
CfoI GCGC 4 cut(s) 113, 216, 446, 1333
Cfr10I RCCGGY 2 cut(s) 200, 1101
Cfr13I GGNCC 3 cut(s) 79, 514, 1017
CseI GACGC 2 cut(s) 629, 890
CsiI ACCWGGT 1 cut(s) 1407
Csp6I GTAC 3 cut(s) 369, 798, 1095
CviAII CATG 7 cut(s) 154, 913, 1021, 1168, 1259, 1360, 1420
CviQI GTAC 3 cut(s) 369, 798, 1095
DdeI CTNAG 3 cut(s) 415, 480, 803
DraIII CACNNNGTG 2 cut(s) 366, 806
DrdI GACNNNNNNGTC 1 cut(s) 77
DriI GACNNNNNGTC 1 cut(s) 825
DseDI GACNNNNNNGTC 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 627, 1272
Eam1105I GACNNNNNGTC 1 cut(s) 825
EarI CTCTTC 2 cut(s) 627, 1272
EciI GGCGGA 2 cut(s) 26, 1017
Eco130I CCWWGG 1 cut(s) 474
Eco47I GGWCC 3 cut(s) 79, 514, 1017
Eco47III AGCGCT 1 cut(s) 1332
Eco91I GGTNACC 1 cut(s) 1369
EcoO109I RGGNCCY 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 1369
EcoRII CCWGG 2 cut(s) 925, 1407
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 7 cut(s) 157, 916, 1024, 1171, 1262, 1363, 1423
FalI AAGNNNNNCTT 4 cut(s) 609, 641, 1145, 1177
FaqI GGGAC 2 cut(s) 648, 932
FatI CATG 7 cut(s) 153, 912, 1020, 1167, 1258, 1359, 1419
FbaI TGATCA 2 cut(s) 51, 1129
FblI GTMKAC 1 cut(s) 69
FokI GGATG 1 cut(s) 701
FspBI CTAG 1 cut(s) 597
GlaI GCGC 4 cut(s) 112, 215, 445, 1332
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 2 cut(s) 447, 1334
HapII CCGG 5 cut(s) 201, 898, 1102, 1339, 1375
HgaI GACGC 2 cut(s) 629, 890
HhaI GCGC 4 cut(s) 113, 216, 446, 1333
Hin1I GRCGYC 2 cut(s) 129, 901
Hin1II CATG 7 cut(s) 157, 916, 1024, 1171, 1262, 1363, 1423
Hin6I GCGC 4 cut(s) 111, 214, 444, 1331
HinP1I GCGC 4 cut(s) 111, 214, 444, 1331
HincII GTYRAC 2 cut(s) 70, 644
HindII GTYRAC 2 cut(s) 70, 644
HindIII AAGCTT 1 cut(s) 1435
HinfI GANTC 5 cut(s) 826, 943, 1119, 1175, 1444
HpaII CCGG 5 cut(s) 201, 898, 1102, 1339, 1375
Hpy166II GTNNAC 5 cut(s) 70, 341, 369, 644, 800
Hpy8I GTNNAC 5 cut(s) 70, 341, 369, 644, 800
Hpy99I CGWCG 3 cut(s) 64, 74, 131
HpyAV CCTTC 3 cut(s) 70, 530, 886
HpyCH4III ACNGT 3 cut(s) 64, 123, 779
HpyCH4IV ACGT 3 cut(s) 129, 165, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 476, 752, 815, 1298
HpyF3I CTNAG 3 cut(s) 415, 480, 803
HpySE526I ACGT 3 cut(s) 129, 165, 365
Hsp92I GRCGYC 2 cut(s) 129, 901
Hsp92II CATG 7 cut(s) 157, 916, 1024, 1171, 1262, 1363, 1423
HspAI GCGC 4 cut(s) 111, 214, 444, 1331
Kpn2I TCCGGA 1 cut(s) 1338
Ksp22I TGATCA 2 cut(s) 51, 1129
LguI GCTCTTC 1 cut(s) 1272
LmnI GCTCC 4 cut(s) 24, 752, 1086, 1341
Lsp1109I GCAGC 7 cut(s) 184, 246, 607, 827, 1320, 1386, 1408
LweI GCATC 3 cut(s) 627, 679, 1068
MabI ACCWGGT 1 cut(s) 1407
MaeI CTAG 1 cut(s) 597
MaeII ACGT 3 cut(s) 129, 165, 365
MaeIII GTNAC 5 cut(s) 203, 500, 763, 779, 1369
MbiI CCGCTC 1 cut(s) 1367
MboII GAAGA 4 cut(s) 319, 644, 986, 1289
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 2 cut(s) 40, 858
MluCI AATT 5 cut(s) 14, 134, 525, 585, 1312
MluI ACGCGT 1 cut(s) 378
MlyI GAGTC 2 cut(s) 835, 1113
MmeI TCCRAC 4 cut(s) 150, 730, 849, 1176
MnlI CCTC 6 cut(s) 14, 50, 104, 540, 597, 1446
MroI TCCGGA 1 cut(s) 1338
MroXI GAANNNNTTC 2 cut(s) 954, 1157
MseI TTAA 3 cut(s) 168, 551, 732
MslI CAYNNNNRTG 1 cut(s) 1025
MspA1I CMGCKG 2 cut(s) 1353, 1399
MspI CCGG 5 cut(s) 201, 898, 1102, 1339, 1375
MspR9I CCNGG 3 cut(s) 927, 1375, 1409
MvaI CCWGG 2 cut(s) 927, 1409
MvnI CGCG 4 cut(s) 111, 150, 380, 948
MwoI GCNNNNNNNGC 4 cut(s) 476, 752, 815, 1298
NciI CCSGG 1 cut(s) 1375
NlaIII CATG 7 cut(s) 157, 916, 1024, 1171, 1262, 1363, 1423
NlaIV GGNNCC 3 cut(s) 267, 486, 516
NmeAIII GCCGAG 2 cut(s) 1032, 1101
NmuCI GTSAC 2 cut(s) 203, 779
NruI TCGCGA 2 cut(s) 150, 948
NspI RCATGY 2 cut(s) 157, 1363
PagI TCATGA 2 cut(s) 1167, 1258
PciSI GCTCTTC 1 cut(s) 1272
PdmI GAANNNNTTC 2 cut(s) 954, 1157
PfeI GAWTC 3 cut(s) 943, 1175, 1444
PleI GAGTC 2 cut(s) 834, 1113
PpsI GAGTC 2 cut(s) 834, 1113
PpuMI RGGWCCY 1 cut(s) 79
PshAI GACNNNNGTC 1 cut(s) 65
PsiI TTATAA 1 cut(s) 1459
Psp1406I AACGTT 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 2 cut(s) 925, 1407
PspEI GGTNACC 1 cut(s) 1369
PspGI CCWGG 2 cut(s) 925, 1407
PspN4I GGNNCC 3 cut(s) 267, 486, 516
PspPI GGNCC 3 cut(s) 79, 514, 1017
PspPPI RGGWCCY 1 cut(s) 79
PstI CTGCAG 3 cut(s) 264, 1090, 1117
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 1399
RruI TCGCGA 2 cut(s) 150, 948
RsaI GTAC 3 cut(s) 370, 799, 1096
RsaNI GTAC 3 cut(s) 369, 798, 1095
RseI CAYNNNNRTG 1 cut(s) 1025
SalI GTCGAC 1 cut(s) 68
SapI GCTCTTC 1 cut(s) 1272
SaqAI TTAA 3 cut(s) 168, 551, 732
Sau96I GGNCC 3 cut(s) 79, 514, 1017
SbfI CCTGCAGG 1 cut(s) 1117
SchI GAGTC 2 cut(s) 835, 1113
ScrFI CCNGG 3 cut(s) 927, 1375, 1409
SdaI CCTGCAGG 1 cut(s) 1117
SduI GDGCHC 2 cut(s) 40, 858
SexAI ACCWGGT 1 cut(s) 1407
SfaNI GCATC 3 cut(s) 627, 679, 1068
SfcI CTRYAG 4 cut(s) 119, 260, 1086, 1113
SinI GGWCC 3 cut(s) 79, 514, 1017
SmiMI CAYNNNNRTG 1 cut(s) 1025
SmlI CTYRAG 3 cut(s) 458, 723, 1188
SmoI CTYRAG 3 cut(s) 458, 723, 1188
SpeI ACTAGT 1 cut(s) 596
Sse8387I CCTGCAGG 1 cut(s) 1117
Sse9I AATT 5 cut(s) 14, 134, 525, 585, 1312
SspI AATATT 1 cut(s) 991
SspMI CTAG 1 cut(s) 597
StyD4I CCNGG 3 cut(s) 925, 1373, 1407
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 64, 123, 779
TaiI ACGT 3 cut(s) 132, 168, 368
TaqI TCGA 6 cut(s) 69, 240, 450, 534, 879, 1076
TasI AATT 5 cut(s) 14, 134, 525, 585, 1312
TatI WGTACW 1 cut(s) 368
TauI GCSGC 3 cut(s) 473, 795, 1356
TfiI GAWTC 3 cut(s) 943, 1175, 1444
Tru1I TTAA 3 cut(s) 168, 551, 732
Tru9I TTAA 3 cut(s) 168, 551, 732
TscAI CASTG 1 cut(s) 811
TseFI GTSAC 2 cut(s) 203, 779
TseI GCWGC 7 cut(s) 197, 259, 620, 815, 1333, 1396, 1399
Tsp45I GTSAC 2 cut(s) 203, 779
TspDTI ATGAA 4 cut(s) 704, 1166, 1275, 1457
TspGWI ACGGA 4 cut(s) 477, 527, 875, 1252
TspRI CASTG 1 cut(s) 811
VpaK11BI GGWCC 3 cut(s) 79, 514, 1017
XapI RAATTY 1 cut(s) 1312
XceI RCATGY 2 cut(s) 157, 1363
XmiI GTMKAC 1 cut(s) 69
XmnI GAANNNNTTC 2 cut(s) 954, 1157
XspI CTAG 1 cut(s) 597
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.