pycom09g03160

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024313
Physical Location & Seq
Forward (+)
2339635 .. 2341514
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03160.4

Sequence Viewer

Length: 1320 bp
ATGTGGAGACCAAACCGATCAATCAAACAACCAACAATGGTGTTGGCGGAATTAGGAGGGAGCATATCCCGTGCCCTCCAGCAGATCGATCAATGCCACGGTGTCTGCCAAATGCTGCAGGATCCATCGGGGAAACCCGATCAGCTTGTGCCGAAAAAAGGGAAGAAACCGAGCCAAGTTGTAATGTTTGTTGGTTTACAAGGGTCTGGAAAAACCACAACGTGTACAAAATACGCGTATTATCATAAGAACAAAGGCTGGAAACCTGCCTTAGTTTGTTGTGCAGACACATTCCGAGCTGGGGCTTTGGATCAGCTCAAGCAAAACACCGCCAAGGCCAAGGTTCCGTTTTATGGAAGTTACACAGAGACGGACCCTGTGAAAATTGCGGTTGAAGGTGTGGACAGGTTCAAAAACGATCAGAGCAATAGTTTTGATCTCGTAATTGTTGATACTAGTGGGAGGCACAAGCAAGAAGCTGCTCTTTTCGAAGAGATGCGTCAACTTTCCGAAGCAATCAGTCCCGACCTTGTTGTGTTTGTTATGGATGCAAGTATCGGACAATCTGCATTTCATCAAGCTCAAGCGTTTAAGCAAAGCGTTGCGGTTGGAGCTGTTATTGTAAGGAAAATGGACGGTCATGCGAAGGGTGGCGGTGCTCTCAGTGCTGTTGCAGCAACAAAGAGTCCTGTTATATTTATCGGAACAGGAGAGCACACGGATCAGTTGGAAGCCTTTGATGTGAAACCCTTTGTCCGGCGTCTGTTGGGCATGGGGGACTTGTCCGGACTTGCAAACAAGATCCGCGAAGCTGTTCCGATGGATCAACACGAAGACATATTGGAAAAGATTTTACAGGGCGGATTTACGATAAGGGCAATGCAAGTGTTGCTTCAGACCAAGCTAAAACTCGGCACACCTAGCCAGCTCGCTGCGATGATCCCTGCAGAATGTACGAGCCGGTTATTTCCTGCAGGACTTGGCGATGATCAGGAAAATCAGAACCAGATGAAGCAGTTCTTGGTCATGATGGATTCAATGACTGCTCAAGAGTTGGATAGCCCGAACCTCAAGGTAAGCGAGTTGCGGAGACAACGGATAGCAAGGGGTTCTGGTCATGAAGTTAGACAAGTAGAAGAGCTGATTGAAGCGTGCAAAGCTGTTGGCAAGAATTTTAGCAACAGGAGAGCGCTGCTTCGGAGTTTGAACAGCGGCAACATGCGAGCGGTAACCCGGAATATGAGTAGTAATCCGTGGCTGCTCAACCAGGTTGGGGGCATGGGTGGTTTGAGAAGTTTGATGAATCCGGGGAGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 ko03070 map02024 map03060 map03070
Pfam Domains
Protein Families
SRP54 SRP54_N SRP_SPB

Protein Analysis

440

Amino Acids

48.04

Weight (kDa)

9.39

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024313)

Species Orthologous Gene IDs
malus_domestica MD09G1109100.v1.1 MD17G1097400.v1.1
pyrus_communis pycom09g03160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1318
Acc36I ACCTGC 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 1226
AccII CGCG 2 cut(s) 236, 807
AccIII TCCGGA 1 cut(s) 785
AclWI GGATC 7 cut(s) 116, 129, 318, 729, 796, 831, 934
AcsI RAATTY 1 cut(s) 1171
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 760
AdeI CACNNNGTG 1 cut(s) 222
AfaI GTAC 2 cut(s) 226, 955
AfeI AGCGCT 1 cut(s) 1191
AfiI CCNNNNNNNGG 5 cut(s) 158, 301, 353, 756, 1273
AflIII ACRYGT 2 cut(s) 221, 234
AgsI TTSAA 5 cut(s) 395, 412, 1038, 1148, 1207
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 1 cut(s) 1266
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
Alw21I GWGCWC 2 cut(s) 661, 717
Alw26I GTCTC 2 cut(s) 362, 1084
AlwI GGATC 7 cut(s) 116, 129, 318, 729, 796, 831, 934
Aor13HI TCCGGA 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 1191
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 6 cut(s) 115, 479, 674, 932, 1192, 1258
ApoI RAATTY 1 cut(s) 1171
Asp700I GAANNNNTTC 2 cut(s) 813, 1016
AspLEI GCGC 1 cut(s) 1192
AspS9I GGNCC 1 cut(s) 373
AsuC2I CCSGG 2 cut(s) 1234, 1308
AsuII TTCGAA 1 cut(s) 489
AvaII GGWCC 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 76
BamHI GGATCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 840
Bbv12I GWGCWC 2 cut(s) 661, 717
BbvI GCAGC 6 cut(s) 102, 466, 686, 919, 1179, 1245
BccI CCATC 3 cut(s) 133, 814, 1024
BciT130I CCWGG 1 cut(s) 1268
BclI TGATCA 1 cut(s) 988
BcnI CCSGG 2 cut(s) 1234, 1308
BcoDI GTCTC 2 cut(s) 362, 1084
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 2 cut(s) 456, 921
BfmI CTRYAG 3 cut(s) 116, 945, 972
BfoI RGCGCY 1 cut(s) 1193
BfuAI ACCTGC 1 cut(s) 274
BisI GCNGC 7 cut(s) 116, 480, 675, 933, 1193, 1213, 1259
BlsI GCNGC 7 cut(s) 117, 481, 676, 934, 1194, 1214, 1260
Bme1390I CCNGG 3 cut(s) 1234, 1268, 1308
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 123, 345, 375
BmrFI CCNGG 3 cut(s) 1234, 1268, 1308
BmsI GCATC 2 cut(s) 486, 538
BpiI GAAGAC 1 cut(s) 840
BpmI CTGGAG 1 cut(s) 62
Bpu14I TTCGAA 1 cut(s) 489
BpuEI CTTGAG 4 cut(s) 302, 567, 1032, 1055
BpuMI CCSGG 2 cut(s) 1234, 1308
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 760
BsaJI CCNNGG 5 cut(s) 97, 333, 339, 1253, 1307
BsaWI WCCGGW 1 cut(s) 785
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 301, 353, 756, 1273
Bse118I RCCGGY 1 cut(s) 960
Bse3DI GCAATG 1 cut(s) 885
BseAI TCCGGA 1 cut(s) 785
BseBI CCWGG 1 cut(s) 1268
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 5 cut(s) 97, 333, 339, 1253, 1307
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 5 cut(s) 158, 301, 353, 756, 1273
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 1 cut(s) 676
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 6 cut(s) 102, 466, 686, 919, 1179, 1245
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 303
Bsh1236I CGCG 2 cut(s) 236, 807
BshFI GGCC 1 cut(s) 338
BshVI ATCGAT 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 661, 717
BsiSI CCGG 5 cut(s) 757, 786, 961, 1234, 1307
BslFI GGGAC 2 cut(s) 507, 791
BslI CCNNNNNNNGG 5 cut(s) 158, 301, 353, 756, 1273
BsmAI GTCTC 2 cut(s) 362, 1084
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 507, 791
BsnI GGCC 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 489
Bsp1286I GDGCHC 3 cut(s) 76, 661, 717
Bsp13I TCCGGA 1 cut(s) 785
Bsp1407I TGTACA 1 cut(s) 224
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 675
BspDI ATCGAT 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 785
BspFNI CGCG 2 cut(s) 236, 807
BspHI TCATGA 2 cut(s) 1026, 1117
BspLI GGNNCC 3 cut(s) 123, 345, 375
BspMAI CTGCAG 3 cut(s) 120, 949, 976
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 7 cut(s) 116, 129, 318, 729, 796, 831, 934
BspQI GCTCTTC 1 cut(s) 1131
BspT104I TTCGAA 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 1226
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 1 cut(s) 960
BsrGI TGTACA 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 960
BssECI CCNNGG 5 cut(s) 97, 333, 339, 1253, 1307
BssNI GRCGYC 1 cut(s) 760
BssT1I CCWWGG 2 cut(s) 333, 339
Bst2UI CCWGG 1 cut(s) 1268
Bst4CI ACNGT 2 cut(s) 101, 638
Bst6I CTCTTC 2 cut(s) 486, 1131
BstACI GRCGYC 1 cut(s) 760
BstAPI GCANNNNNTGC 1 cut(s) 889
BstAUI TGTACA 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 4 cut(s) 926, 930, 1153, 1224
BstDEI CTNAG 2 cut(s) 271, 662
BstDSI CCRYGG 2 cut(s) 97, 1253
BstEII GGTNACC 1 cut(s) 1228
BstF5I GGATG 1 cut(s) 553
BstFNI CGCG 2 cut(s) 236, 807
BstH2I RGCGCY 1 cut(s) 1193
BstHHI GCGC 1 cut(s) 1192
BstMAI GTCTC 2 cut(s) 362, 1084
BstMWI GCNNNNNNNGC 6 cut(s) 611, 665, 674, 889, 921, 1157
BstNI CCWGG 1 cut(s) 1268
BstNSI RCATGY 1 cut(s) 1222
BstPI GGTNACC 1 cut(s) 1228
BstSCI CCNGG 3 cut(s) 1232, 1266, 1306
BstSFI CTRYAG 3 cut(s) 116, 945, 972
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 236, 807
BstV1I GCAGC 6 cut(s) 102, 466, 686, 919, 1179, 1245
BstV2I GAAGAC 1 cut(s) 840
BstX2I RGATCY 2 cut(s) 121, 801
BstYI RGATCY 2 cut(s) 121, 801
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 1 cut(s) 338
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 2 cut(s) 97, 1253
BtgZI GCGATG 2 cut(s) 950, 999
BtsCI GGATG 1 cut(s) 553
BtsIMutI CAGTG 1 cut(s) 670
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 4 cut(s) 926, 930, 1153, 1224
CciI TCATGA 2 cut(s) 1026, 1117
CfoI GCGC 1 cut(s) 1192
Cfr10I RCCGGY 1 cut(s) 960
Cfr13I GGNCC 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 87
CseI GACGC 2 cut(s) 488, 749
CsiI ACCWGGT 1 cut(s) 1266
Csp6I GTAC 2 cut(s) 225, 954
CviAII CATG 6 cut(s) 641, 772, 1027, 1118, 1219, 1279
CviQI GTAC 2 cut(s) 225, 954
DdeI CTNAG 2 cut(s) 271, 662
DraIII CACNNNGTG 1 cut(s) 222
Eam1104I CTCTTC 2 cut(s) 486, 1131
EarI CTCTTC 2 cut(s) 486, 1131
EciI GGCGGA 2 cut(s) 62, 876
Eco130I CCWWGG 2 cut(s) 333, 339
Eco47I GGWCC 1 cut(s) 373
Eco47III AGCGCT 1 cut(s) 1191
Eco57I CTGAAG 1 cut(s) 878
Eco91I GGTNACC 1 cut(s) 1228
EcoO65I GGTNACC 1 cut(s) 1228
EcoRII CCWGG 1 cut(s) 1266
EcoT14I CCWWGG 2 cut(s) 333, 339
ErhI CCWWGG 2 cut(s) 333, 339
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 6 cut(s) 644, 775, 1030, 1121, 1222, 1282
FalI AAGNNNNNCTT 6 cut(s) 468, 500, 876, 908, 1004, 1036
FaqI GGGAC 2 cut(s) 507, 791
FatI CATG 6 cut(s) 640, 771, 1026, 1117, 1218, 1278
FbaI TGATCA 1 cut(s) 988
Fnu4HI GCNGC 7 cut(s) 116, 480, 675, 933, 1193, 1213, 1259
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 7 cut(s) 116, 480, 675, 933, 1193, 1213, 1259
FspBI CTAG 2 cut(s) 456, 921
GlaI GCGC 1 cut(s) 1191
GluI GCNGC 7 cut(s) 116, 480, 675, 933, 1193, 1213, 1259
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 1193
HaeIII GGCC 1 cut(s) 338
HapII CCGG 5 cut(s) 757, 786, 961, 1234, 1307
HgaI GACGC 2 cut(s) 488, 749
HhaI GCGC 1 cut(s) 1192
Hin1I GRCGYC 1 cut(s) 760
Hin1II CATG 6 cut(s) 644, 775, 1030, 1121, 1222, 1282
Hin6I GCGC 1 cut(s) 1190
HinP1I GCGC 1 cut(s) 1190
HincII GTYRAC 1 cut(s) 503
HindII GTYRAC 1 cut(s) 503
HinfI GANTC 3 cut(s) 685, 1034, 1303
HpaII CCGG 5 cut(s) 757, 786, 961, 1234, 1307
Hpy166II GTNNAC 4 cut(s) 197, 225, 403, 503
Hpy188I TCNGA 9 cut(s) 296, 423, 511, 560, 704, 819, 897, 1002, 1200
Hpy188III TCNNGA 7 cut(s) 207, 524, 786, 992, 1027, 1049, 1118
Hpy8I GTNNAC 4 cut(s) 197, 225, 403, 503
HpyAV CCTTC 2 cut(s) 389, 640
HpyCH4III ACNGT 2 cut(s) 101, 638
HpyCH4IV ACGT 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 6 cut(s) 611, 665, 674, 889, 921, 1157
HpyF3I CTNAG 2 cut(s) 271, 662
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 760
Hsp92II CATG 6 cut(s) 644, 775, 1030, 1121, 1222, 1282
HspAI GCGC 1 cut(s) 1190
Kpn2I TCCGGA 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 988
LguI GCTCTTC 1 cut(s) 1131
LmnI GCTCC 2 cut(s) 60, 611
Lsp1109I GCAGC 6 cut(s) 102, 466, 686, 919, 1179, 1245
LweI GCATC 2 cut(s) 486, 538
MabI ACCWGGT 1 cut(s) 1266
MaeI CTAG 2 cut(s) 456, 921
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 2 cut(s) 359, 1228
MbiI CCGCTC 1 cut(s) 1226
MboII GAAGA 4 cut(s) 175, 503, 845, 1148
MflI RGATCY 2 cut(s) 121, 801
MhlI GDGCHC 3 cut(s) 76, 661, 717
MluCI AATT 4 cut(s) 50, 384, 444, 1171
MluI ACGCGT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 694
MmeI TCCRAC 3 cut(s) 589, 708, 1035
MnlI CCTC 5 cut(s) 50, 86, 456, 1079, 1305
MroI TCCGGA 1 cut(s) 785
MroXI GAANNNNTTC 2 cut(s) 813, 1016
MseI TTAA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 1212
MspI CCGG 5 cut(s) 757, 786, 961, 1234, 1307
MspR9I CCNGG 3 cut(s) 1234, 1268, 1308
MvaI CCWGG 1 cut(s) 1268
MvnI CGCG 2 cut(s) 236, 807
MwoI GCNNNNNNNGC 6 cut(s) 611, 665, 674, 889, 921, 1157
NciI CCSGG 2 cut(s) 1234, 1308
NlaIII CATG 6 cut(s) 644, 775, 1030, 1121, 1222, 1282
NlaIV GGNNCC 3 cut(s) 123, 345, 375
NmeAIII GCCGAG 1 cut(s) 891
NspI RCATGY 1 cut(s) 1222
NspV TTCGAA 1 cut(s) 489
PagI TCATGA 2 cut(s) 1026, 1117
PciSI GCTCTTC 1 cut(s) 1131
PdmI GAANNNNTTC 2 cut(s) 813, 1016
PfeI GAWTC 2 cut(s) 1034, 1303
PkrI GCNGC 7 cut(s) 117, 481, 676, 934, 1194, 1214, 1260
PleI GAGTC 1 cut(s) 693
PpsI GAGTC 1 cut(s) 693
PsiI TTATAA 1 cut(s) 1318
Psp6I CCWGG 1 cut(s) 1266
PspEI GGTNACC 1 cut(s) 1228
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 1266
PspN4I GGNNCC 3 cut(s) 123, 345, 375
PspPI GGNCC 1 cut(s) 373
PstI CTGCAG 3 cut(s) 120, 949, 976
PsuI RGATCY 2 cut(s) 121, 801
RsaI GTAC 2 cut(s) 226, 955
RsaNI GTAC 2 cut(s) 225, 954
SapI GCTCTTC 1 cut(s) 1131
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 7 cut(s) 116, 480, 675, 933, 1193, 1213, 1259
Sau96I GGNCC 1 cut(s) 373
SbfI CCTGCAGG 1 cut(s) 976
SchI GAGTC 1 cut(s) 694
ScrFI CCNGG 3 cut(s) 1234, 1268, 1308
SdaI CCTGCAGG 1 cut(s) 976
SduI GDGCHC 3 cut(s) 76, 661, 717
SexAI ACCWGGT 1 cut(s) 1266
SfaNI GCATC 2 cut(s) 486, 538
SfcI CTRYAG 3 cut(s) 116, 945, 972
SfuI TTCGAA 1 cut(s) 489
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 4 cut(s) 317, 582, 1047, 1070
SmoI CTYRAG 4 cut(s) 317, 582, 1047, 1070
SpeI ACTAGT 1 cut(s) 455
Sse8387I CCTGCAGG 1 cut(s) 976
Sse9I AATT 4 cut(s) 50, 384, 444, 1171
SspMI CTAG 2 cut(s) 456, 921
StyD4I CCNGG 3 cut(s) 1232, 1266, 1306
StyI CCWWGG 2 cut(s) 333, 339
TaaI ACNGT 2 cut(s) 101, 638
TaiI ACGT 1 cut(s) 224
TaqI TCGA 2 cut(s) 87, 489
TasI AATT 4 cut(s) 50, 384, 444, 1171
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 1215
TfiI GAWTC 2 cut(s) 1034, 1303
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 1 cut(s) 670
TseI GCWGC 6 cut(s) 115, 479, 674, 932, 1192, 1258
TspDTI ATGAA 4 cut(s) 563, 1025, 1134, 1316
TspGWI ACGGA 5 cut(s) 336, 386, 734, 1111, 1242
TspRI CASTG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 1 cut(s) 1171
XceI RCATGY 1 cut(s) 1222
XmnI GAANNNNTTC 2 cut(s) 813, 1016
XspI CTAG 2 cut(s) 456, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.