MD09G1124100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0021125
Physical Location & Seq
Forward (+)
9589131 .. 9592663
3533 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1124100.v1.1.491

Sequence Viewer

Length: 225 bp
ATGGCGATGGAAAGAGAGCGAGGGGGAGGGGGAGGGGTAGGGGTGATGGATTTCACAAGTGGGAGAGTGGGGATGGTCAGAGAAAACCATAGGGGTCGTCCGGATCTCGAGCTGCATGCTTGGATTTCCAAAGATAAGTTCGTTTTTTTAATTCGATTCTTTACCATTAGCTTAGATTGTCATCATTTCTGCCTTTTTGTTGTGAATTATTTTCGAATTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

8.84

Isoelectric Point (pI)

18.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021125)

Species Orthologous Gene IDs
malus_domestica MD09G1124100.v1.1 MD13G1260600.v1.1 MD17G1002200.v1.1
pyrus_communis pycom10g07090 pycom12g16410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 100
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 2 cut(s) 112, 171
AluI AGCT 2 cut(s) 112, 171
AlwI GGATC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 107
Aor13HI TCCGGA 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 107
BbvI GCAGC 1 cut(s) 99
BccI CCATC 2 cut(s) 40, 67
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 180
BseAI TCCGGA 1 cut(s) 100
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 214
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 100
BspPI GGATC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 214
BssMI GATC 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 172
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 117
CviAII CATG 1 cut(s) 116
CviJI RGCY 2 cut(s) 112, 171
CviKI_1 RGCY 2 cut(s) 112, 171
DdeI CTNAG 1 cut(s) 172
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 107
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 90, 117
FatI CATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 113
GluI GCNGC 1 cut(s) 113
HapII CCGG 1 cut(s) 101
Hin1II CATG 1 cut(s) 119
HinfI GANTC 1 cut(s) 156
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 101, 107
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 172
Hsp92II CATG 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 1 cut(s) 114
Lsp1109I GCAGC 1 cut(s) 99
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MflI RGATCY 1 cut(s) 103
MluCI AATT 3 cut(s) 150, 205, 216
MnlI CCTC 3 cut(s) 14, 20, 26
MroI TCCGGA 1 cut(s) 100
MseI TTAA 1 cut(s) 149
MspI CCGG 1 cut(s) 101
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 119
NspI RCATGY 1 cut(s) 119
NspV TTCGAA 1 cut(s) 214
PaeI GCATGC 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 107
PfeI GAWTC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 103
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 113
Sau3AI GATC 1 cut(s) 103
SetI ASST 2 cut(s) 114, 173
Sfr274I CTCGAG 1 cut(s) 107
SfuI TTCGAA 1 cut(s) 214
SgeI CNNG 7 cut(s) 32, 69, 113, 119, 121, 128, 132
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SphI GCATGC 1 cut(s) 119
Sse9I AATT 3 cut(s) 150, 205, 216
TaqI TCGA 3 cut(s) 108, 154, 214
TasI AATT 3 cut(s) 150, 205, 216
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseI GCWGC 1 cut(s) 112
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.