MD09G1164000.v1.1

Histone chaperone domain CHZ

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
13401544 .. 13408716
7173 bp
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UTR
Exon/CDS
Intron
MD09G1164000.v1.1.491

Sequence Viewer

Length: 141 bp
ATGGTAATGGTGGAGGATGCGCAAGATAGCAAGAGCCCTCTGAAGGAGGCGCATGATATCCAGTCCCAGATTAAGAGTGCTATGCAGTCACGCGTCCCTTGCTTCAAAGAACTATCTGAGTTAACTGTCTTATTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

47

Amino Acids

5.23

Weight (kDa)

5.05

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024322)

Species Orthologous Gene IDs
malus_domestica MD02G1293800.v1.1 MD09G1164000.v1.1
pyrus_communis pycom15g31410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AccII CGCG 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 1 cut(s) 106
AspLEI GCGC 2 cut(s) 22, 52
BanII GRGCYC 1 cut(s) 38
BmsI GCATC 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 93
BslFI GGGAC 2 cut(s) 49, 80
BslI CCNNNNNNNGG 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 49, 80
Bsp1286I GDGCHC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 2 cut(s) 22, 52
BstMWI GCNNNNNNNGC 1 cut(s) 99
BstUI CGCG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 22
CfoI GCGC 2 cut(s) 22, 52
CseI GACGC 1 cut(s) 82
CviAII CATG 2 cut(s) 53, 136
CviJI RGCY 1 cut(s) 36
CviKI_1 RGCY 1 cut(s) 36
DdeI CTNAG 1 cut(s) 117
Eco24I GRGCYC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 62
EcoRV GATATC 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 2 cut(s) 56, 139
FaiI YATR 3 cut(s) 54, 83, 137
FaqI GGGAC 2 cut(s) 49, 80
FatI CATG 2 cut(s) 52, 135
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 38
FspEI CC 9 cut(s) 29, 32, 50, 51, 74, 79, 80, 110, 111
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 2 cut(s) 21, 51
HgaI GACGC 1 cut(s) 82
HhaI GCGC 2 cut(s) 22, 52
Hin1II CATG 2 cut(s) 56, 139
Hin6I GCGC 2 cut(s) 20, 50
HinP1I GCGC 2 cut(s) 20, 50
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HpaI GTTAAC 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 2 cut(s) 42, 118
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 1 cut(s) 99
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 2 cut(s) 56, 139
HspAI GCGC 2 cut(s) 20, 50
KspAI GTTAAC 1 cut(s) 123
LpnPI CCDG 2 cut(s) 74, 80
LweI GCATC 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 38
MluI ACGCGT 1 cut(s) 91
MnlI CCTC 3 cut(s) 7, 40, 48
MseI TTAA 2 cut(s) 72, 122
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 99
NlaIII CATG 2 cut(s) 56, 139
NmuCI GTSAC 1 cut(s) 87
NsbI TGCGCA 1 cut(s) 21
SaqAI TTAA 2 cut(s) 72, 122
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 1 cut(s) 7
SgeI CNNG 8 cut(s) 35, 43, 65, 73, 79, 102, 104, 111
TaaI ACNGT 1 cut(s) 127
Tru1I TTAA 2 cut(s) 72, 122
Tru9I TTAA 2 cut(s) 72, 122
TseFI GTSAC 1 cut(s) 87
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.