Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013731

Physical Location & Seq

Genomic Coordinates Reverse (-)

16027790 .. 16030264

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1185100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCATCTCTCTGGAACACCAGTAATCCCGCCATGGCTGATGCCTCAGATCCATTTCAACTCCCCAATATTCCGAAGTTTAAGGTTGCTCTATGTCAGTTGTCAGTTACTTCTGACAAGAATCAGAATCTTGATCGTGCCGGCATTTCGATAAAAACTGCCGCCGAGCAAGGCGCAAAGCTACTTGTTTTACCAGAAATGTGGAACTGCCCTTATTCAAGTGACTACTTTGCAAAATTTGCTGAGGATTTTACGAATGAGGATGCCTCGCCGACGTTGTCCATGCTATCGGATGCTGCTTATTGCCATGGGATCACAATCGTAGGAGGGTCGGTGCCTGAACGGGATCATGGCAGGTTGTATAATACTTGCTGCATATTTGGACCAGATGGAAAGCTCAAAGCTAAGCATAGGAAAATACATTTATTCGACATTGACGTTCCAGGAGAGATATCATTTAAGGAATCTGACTTCTTTTTGGCAGGAGATCAAACTACCATAGTGGACACAGAAGTTGGTCGTATCGGAGTGGGAATCTGTCATGATTTACAGTTTCCTGAACTTGCTGCATTGTACAGGAAAAAAGGCGTTCACATAATATGCTATCCCGGGGCATTCAACATGAGCACTGGTGAATTGTTGTGGGAGCTCGTACAGAGAGCAAGGGCAGTTGATAACCAGTTATTCGTAGCTACTTGTTCACCTTCTCGAGACTCCACTGGTTCTTACACAATATGGGGACACTCCACGCTAGTTGAACCGTCGGGCGAGATAATTGCAACCGCAGGGCATGAGGAAACTATTGTAATCGCCGAGATTGATTACTCTAAAATTCAGCTCCAAAGAAAGAGCCTCCAACTTGATGAACAAAAGTGGGAAGACATCTCCAAGTTGATCGATGTGCGCATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006107 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019752 GO:0042221 GO:0043436 GO:0043648 GO:0044237 GO:0044281 GO:0050152 GO:0050896 GO:0051716 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00250 map00250

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

305

Amino Acids

33.64

Weight (kDa)

5.11

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	28 - 282	2.1e-65	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013731)

Species	Orthologous Gene IDs
malus_domestica	MD09G1185100.v1.1
prunus_persica	Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1
pyrus_communis	pycom09g10270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	905
Acc36I	ACCTGC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	334
AciI	CCGC	3 cut(s)	30, 162, 783
AclWI	GGATC	3 cut(s)	44, 320, 354
AcsI	RAATTY	2 cut(s)	236, 831
AfaI	GTAC	2 cut(s)	575, 654
AgsI	TTSAA	4 cut(s)	59, 219, 619, 758
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	6 cut(s)	181, 397, 404, 649, 692, 838
AluI	AGCT	6 cut(s)	181, 397, 404, 649, 692, 838
Alw21I	GWGCWC	2 cut(s)	629, 651
Alw26I	GTCTC	1 cut(s)	705
AlwI	GGATC	3 cut(s)	44, 320, 354
Ama87I	CYCGRG	2 cut(s)	608, 708
ApeKI	GCWGC	3 cut(s)	296, 372, 566
ApoI	RAATTY	2 cut(s)	236, 831
AspLEI	GCGC	2 cut(s)	176, 906
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	2 cut(s)	609, 610
AsuHPI	GGTGA	2 cut(s)	644, 693
AvaI	CYCGRG	2 cut(s)	608, 708
AvaII	GGWCC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	651
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	2 cut(s)	629, 651
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	283, 359, 553
BccI	CCATC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	2 cut(s)	609, 610
BcoDI	GTCTC	1 cut(s)	705
BfaI	CTAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	4 cut(s)	162, 297, 373, 567
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	4 cut(s)	163, 298, 374, 568
Bme1390I	CCNGG	3 cut(s)	444, 609, 610
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	2 cut(s)	608, 708
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	3 cut(s)	444, 609, 610
BmsI	GCATC	4 cut(s)	14, 31, 253, 283
BpiI	GAAGAC	1 cut(s)	885
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	2 cut(s)	609, 610
Bsa29I	ATCGAT	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	4 cut(s)	33, 307, 608, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	4 cut(s)	21, 634, 679, 724
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	444
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	4 cut(s)	33, 307, 608, 609
BseGI	GGATG	2 cut(s)	268, 298
BseJI	GATNNNNATC	1 cut(s)	317
BseMII	CTCAG	2 cut(s)	60, 234
BseNI	ACTGG	4 cut(s)	21, 634, 679, 724
BseXI	GCAGC	3 cut(s)	283, 359, 553
BshNI	GGYRCC	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	629, 651
BsiHKCI	CYCGRG	2 cut(s)	608, 708
BsiSI	CCGG	2 cut(s)	141, 609
BslFI	GGGAC	1 cut(s)	753
BsmAI	GTCTC	1 cut(s)	705
BsmFI	GGGAC	1 cut(s)	753
BsmI	GAATGC	1 cut(s)	614
BsoBI	CYCGRG	2 cut(s)	608, 708
Bsp1286I	GDGCHC	2 cut(s)	629, 651
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	2 cut(s)	33, 307
BspACI	CCGC	3 cut(s)	30, 162, 783
BspCNI	CTCAG	2 cut(s)	59, 235
BspDI	ATCGAT	1 cut(s)	897
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	3 cut(s)	44, 320, 354
BspT107I	GGYRCC	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	4 cut(s)	21, 634, 679, 724
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	4 cut(s)	33, 307, 608, 609
BssMI	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
BssT1I	CCWWGG	2 cut(s)	33, 307
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	552, 762
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	46, 243, 405
BstDSI	CCRYGG	2 cut(s)	33, 307
BstF5I	GGATG	2 cut(s)	268, 298
BstHHI	GCGC	2 cut(s)	176, 906
BstKTI	GATC	6 cut(s)	52, 136, 315, 349, 490, 897
BstMAI	GTCTC	1 cut(s)	705
BstMBI	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	3 cut(s)	442, 607, 608
BstV1I	GCAGC	3 cut(s)	283, 359, 553
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	1 cut(s)	49
BstXI	CCANNNNNNTGG	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	897
BsuTUI	ATCGAT	1 cut(s)	897
BtgI	CCRYGG	2 cut(s)	33, 307
BtsCI	GGATG	2 cut(s)	268, 298
BtsIMutI	CAGTG	2 cut(s)	627, 717
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	142
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	176, 906
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	383
Cfr9I	CCCGGG	1 cut(s)	608
ClaI	ATCGAT	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	574, 653
CspCI	CAANNNNNGTGG	2 cut(s)	736, 771
CviAII	CATG	8 cut(s)	34, 283, 308, 350, 542, 622, 791, 907
CviJI	RGCY	8 cut(s)	38, 181, 397, 404, 649, 692, 838, 852
CviKI_1	RGCY	8 cut(s)	38, 181, 397, 404, 649, 692, 838, 852
CviQI	GTAC	2 cut(s)	574, 653
DdeI	CTNAG	3 cut(s)	46, 243, 405
DpnI	GATC	6 cut(s)	51, 135, 314, 348, 489, 896
DpnII	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
Ecl136II	GAGCTC	1 cut(s)	649
Eco130I	CCWWGG	2 cut(s)	33, 307
Eco24I	GRGCYC	1 cut(s)	651
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	649
Eco88I	CYCGRG	2 cut(s)	608, 708
EcoICRI	GAGCTC	1 cut(s)	649
EcoRII	CCWGG	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	453
EcoT14I	CCWWGG	2 cut(s)	33, 307
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	2 cut(s)	33, 307
FaeI	CATG	8 cut(s)	37, 286, 311, 353, 545, 625, 794, 910
FaqI	GGGAC	1 cut(s)	753
FatI	CATG	8 cut(s)	33, 282, 307, 349, 541, 621, 790, 906
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	162, 297, 373, 567
FokI	GGATG	2 cut(s)	275, 305
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	4 cut(s)	162, 297, 373, 567
FspAI	RTGCGCAY	1 cut(s)	905
FspBI	CTAG	1 cut(s)	752
FspI	TGCGCA	1 cut(s)	905
GlaI	GCGC	2 cut(s)	175, 905
GluI	GCNGC	4 cut(s)	162, 297, 373, 567
HapII	CCGG	2 cut(s)	141, 609
HhaI	GCGC	2 cut(s)	176, 906
Hin1II	CATG	8 cut(s)	37, 286, 311, 353, 545, 625, 794, 910
Hin6I	GCGC	2 cut(s)	174, 904
HinP1I	GCGC	2 cut(s)	174, 904
HinfI	GANTC	5 cut(s)	121, 127, 464, 534, 713
HpaII	CCGG	2 cut(s)	141, 609
HphI	GGTGA	2 cut(s)	644, 693
Hpy166II	GTNNAC	3 cut(s)	505, 592, 701
Hpy188I	TCNGA	7 cut(s)	49, 75, 115, 126, 292, 469, 527
Hpy188III	TCNNGA	6 cut(s)	13, 131, 542, 557, 708, 710
Hpy8I	GTNNAC	3 cut(s)	505, 592, 701
Hpy99I	CGWCG	2 cut(s)	277, 766
HpyAV	CCTTC	1 cut(s)	714
HpyCH4III	ACNGT	2 cut(s)	552, 762
HpyCH4IV	ACGT	2 cut(s)	275, 438
HpyCH4V	TGCA	4 cut(s)	233, 375, 569, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	3 cut(s)	46, 243, 405
HpySE526I	ACGT	2 cut(s)	275, 438
Hsp92II	CATG	8 cut(s)	37, 286, 311, 353, 545, 625, 794, 910
HspAI	GCGC	2 cut(s)	174, 904
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
LmnI	GCTCC	2 cut(s)	646, 843
Lsp1109I	GCAGC	3 cut(s)	283, 359, 553
LweI	GCATC	4 cut(s)	14, 31, 253, 283
MaeI	CTAG	1 cut(s)	752
MaeII	ACGT	2 cut(s)	275, 438
MaeIII	GTNAC	2 cut(s)	106, 221
MalI	GATC	6 cut(s)	51, 135, 314, 348, 489, 896
MboI	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
MboII	GAAGA	1 cut(s)	890
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	2 cut(s)	629, 651
MluCI	AATT	4 cut(s)	236, 635, 774, 831
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	880
MnlI	CCTC	7 cut(s)	55, 238, 253, 277, 320, 787, 863
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	2 cut(s)	81, 459
MspI	CCGG	2 cut(s)	141, 609
MspR9I	CCNGG	3 cut(s)	444, 609, 610
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	2 cut(s)	609, 610
NcoI	CCATGG	2 cut(s)	33, 307
NdeII	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	8 cut(s)	37, 286, 311, 353, 545, 625, 794, 910
NlaIV	GGNNCC	1 cut(s)	336
NmeAIII	GCCGAG	2 cut(s)	190, 838
NmuCI	GTSAC	1 cut(s)	221
NsbI	TGCGCA	1 cut(s)	905
PaeR7I	CTCGAG	1 cut(s)	708
PagI	TCATGA	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	614
PdiI	GCCGGC	1 cut(s)	142
PfeI	GAWTC	4 cut(s)	121, 127, 464, 534
PflFI	GACNNNGTC	1 cut(s)	277
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	163, 298, 374, 568
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	277
RsaI	GTAC	2 cut(s)	575, 654
RsaNI	GTAC	2 cut(s)	574, 653
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	81, 459
SatI	GCNGC	4 cut(s)	162, 297, 373, 567
Sau3AI	GATC	6 cut(s)	49, 133, 312, 346, 487, 894
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	3 cut(s)	444, 609, 610
SduI	GDGCHC	2 cut(s)	629, 651
SfaNI	GCATC	4 cut(s)	14, 31, 253, 283
Sfr274I	CTCGAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	708
SmaI	CCCGGG	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
Sse9I	AATT	4 cut(s)	236, 635, 774, 831
SsiI	CCGC	3 cut(s)	30, 162, 783
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	752
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	3 cut(s)	442, 607, 608
StyI	CCWWGG	2 cut(s)	33, 307
TaaI	ACNGT	2 cut(s)	552, 762
TaiI	ACGT	2 cut(s)	278, 441
TaqI	TCGA	4 cut(s)	149, 429, 709, 897
TasI	AATT	4 cut(s)	236, 635, 774, 831
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	4 cut(s)	121, 127, 464, 534
Tru1I	TTAA	2 cut(s)	81, 459
Tru9I	TTAA	2 cut(s)	81, 459
TscAI	CASTG	2 cut(s)	634, 724
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	296, 372, 566
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	879
TspMI	CCCGGG	1 cut(s)	608
TspRI	CASTG	2 cut(s)	634, 724
Tth111I	GACNNNGTC	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	2 cut(s)	236, 831
XhoI	CTCGAG	1 cut(s)	708
XmaI	CCCGGG	1 cut(s)	608
XspI	CTAG	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.