Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013731

Physical Location & Seq

Genomic Coordinates Reverse (-)

3066708 .. 3069440

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G043200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAGCTCTTTGGAACACCAGGAATCTCACCATGGCTGATGCCCCAAATCCATTTCAACTCCCCAATATTACCAAGTTTAAGATTGCTCTCTGTCAGTTGTCAATTACTTCAGACAAGAACCAGAATCTTGATCGTGCCTCTCGTTCGATAAGACTTTCTGTCGAGCAAGGCGCAAAGCTGCTTGTTTTACCAGAAATGTGGAACTGTCCTTATTCAAGTGATTATTTTGCAAAATATGCTGAGGATTTTGACAATAGAGATGCCTCGCCAACATTGTCCATGTTATCTGAAGCTGCTTGTTGCCATGGGATCACAATCATAGGAGGATCTTTGCCTGAATGGGATCATGGTCGGTTGTACAATACTTGCTGCATATTTGGACCAGATGGAAGGCTGAAAGCTAAGCACAGGAAAATACATCTGTTTGACATTGACATTCCAGGAGAGATTTCATTCAAGGAATCTGACACCTTCACTGCAGGGGATCAACCTACCATTGTGGACACAGAAGTTGGTCGAATCGGAATAGGAATTTGTCATGATATACGATTTCCTGAACTTGCTGCATTATACAGGAAAAGAGGGGTTGACATCATATGCTATCCTGGGGCATTCAACGTGAGCACTGGTGAATTGTTGTGGGAGCTGGTACAGAGAGCTAGGGCCGTCGATAACCAGTTATTTGTGGCAACTTGCTCACCCTCCCGAAACTCCACTGGTTCTTATACAACTTGGGGCCATTCCACACTAGTTGGACCGTCTGGAGAGATAATTGTTACCTCAGGGCATGAGGAAACTACTGTCATTGCACAGATTGATTACTCTAATATTCAGCTCCAAAGAAAGAGTCTCCCACTTGATGATCAAAAGCGAGAAGACATCTACAAGTTTATCGATGCACATGAATTAAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006107 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019752 GO:0042221 GO:0043436 GO:0043648 GO:0044237 GO:0044281 GO:0050152 GO:0050896 GO:0051716 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00250 map00250

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

307

Amino Acids

34.13

Weight (kDa)

5.51

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013731)

Species	Orthologous Gene IDs
malus_domestica	MD09G1185100.v1.1
prunus_persica	Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1 Prupe.3G043200_v2.0.a1
pyrus_communis	pycom09g10270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	320, 337, 354, 495
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	2 cut(s)	96, 312
AfaI	GTAC	2 cut(s)	362, 654
AgsI	TTSAA	4 cut(s)	59, 219, 460, 619
AhdI	GACNNNNNGTC	1 cut(s)	161
AhlI	ACTAGT	1 cut(s)	751
AjnI	CCWGG	3 cut(s)	20, 442, 607
AluBI	AGCT	7 cut(s)	8, 181, 296, 404, 649, 662, 838
AluI	AGCT	7 cut(s)	8, 181, 296, 404, 649, 662, 838
Alw21I	GWGCWC	1 cut(s)	629
Alw26I	GTCTC	1 cut(s)	857
AlwI	GGATC	4 cut(s)	320, 337, 354, 495
AoxI	GGCC	2 cut(s)	666, 739
ApeKI	GCWGC	5 cut(s)	5, 181, 296, 372, 566
ApoI	RAATTY	1 cut(s)	534
ArsI	GACNNNNNNTTYG	2 cut(s)	835, 867
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	4 cut(s)	383, 666, 739, 758
AsuHPI	GGTGA	3 cut(s)	22, 644, 693
AvaII	GGWCC	2 cut(s)	383, 758
AxyI	CCTNAGG	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	629
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	5 cut(s)	17, 168, 283, 359, 553
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	653
BciT130I	CCWGG	3 cut(s)	22, 444, 609
BclI	TGATCA	1 cut(s)	865
BcoDI	GTCTC	1 cut(s)	857
BcuI	ACTAGT	1 cut(s)	751
BfaI	CTAG	2 cut(s)	663, 752
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	5 cut(s)	6, 182, 297, 373, 567
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	5 cut(s)	7, 183, 298, 374, 568
Bme1390I	CCNGG	3 cut(s)	22, 444, 609
Bme18I	GGWCC	2 cut(s)	383, 758
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmgT120I	GGNCC	4 cut(s)	383, 666, 739, 758
BmiI	GGNNCC	1 cut(s)	740
BmrFI	CCNGG	3 cut(s)	22, 444, 609
BmsI	GCATC	3 cut(s)	31, 253, 889
BpiI	GAAGAC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	786
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	405
Bsa29I	ATCGAT	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	33, 307, 608
Bse1I	ACTGG	3 cut(s)	634, 679, 724
Bse21I	CCTNAGG	1 cut(s)	784
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	3 cut(s)	22, 444, 609
BseCI	ATCGAT	1 cut(s)	897
BseDI	CCNNGG	3 cut(s)	33, 307, 608
BseJI	GATNNNNATC	1 cut(s)	317
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	234, 798
BseNI	ACTGG	3 cut(s)	634, 679, 724
BseXI	GCAGC	5 cut(s)	17, 168, 283, 359, 553
BshFI	GGCC	2 cut(s)	668, 741
BshVI	ATCGAT	1 cut(s)	897
BsiHKAI	GWGCWC	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	857
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	668, 741
Bsp1286I	GDGCHC	1 cut(s)	629
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	2 cut(s)	33, 307
BspANI	GGCC	2 cut(s)	668, 741
BspCNI	CTCAG	2 cut(s)	235, 797
BspDI	ATCGAT	1 cut(s)	897
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	740
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	4 cut(s)	320, 337, 354, 495
BsrDI	GCAATG	1 cut(s)	807
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	634, 679, 724
BssECI	CCNNGG	3 cut(s)	33, 307, 608
BssMI	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
BssT1I	CCWWGG	2 cut(s)	33, 307
Bst2UI	CCWGG	3 cut(s)	22, 444, 609
Bst4CI	ACNGT	3 cut(s)	209, 762, 805
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	243, 405, 784
BstDSI	CCRYGG	2 cut(s)	33, 307
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	6 cut(s)	136, 315, 332, 349, 490, 868
BstMAI	GTCTC	1 cut(s)	857
BstMBI	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	3 cut(s)	22, 444, 609
BstSCI	CCNGG	3 cut(s)	20, 442, 607
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	5 cut(s)	17, 168, 283, 359, 553
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	1 cut(s)	329
BstXI	CCANNNNNNTGG	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	329
Bsu15I	ATCGAT	1 cut(s)	897
Bsu36I	CCTNAGG	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	668, 741
BsuTUI	ATCGAT	1 cut(s)	897
BtgI	CCRYGG	2 cut(s)	33, 307
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	477, 627, 717
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	4 cut(s)	383, 666, 739, 758
ClaI	ATCGAT	1 cut(s)	897
Csp6I	GTAC	2 cut(s)	361, 653
CspCI	CAANNNNNGTGG	2 cut(s)	736, 771
CviAII	CATG	7 cut(s)	34, 283, 308, 350, 542, 791, 905
CviQI	GTAC	2 cut(s)	361, 653
DdeI	CTNAG	3 cut(s)	243, 405, 784
DpnI	GATC	6 cut(s)	135, 314, 331, 348, 489, 867
DpnII	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	161
Eco130I	CCWWGG	2 cut(s)	33, 307
Eco47I	GGWCC	2 cut(s)	383, 758
Eco57I	CTGAAG	2 cut(s)	96, 312
Eco81I	CCTNAGG	1 cut(s)	784
EcoRII	CCWGG	3 cut(s)	20, 442, 607
EcoT14I	CCWWGG	2 cut(s)	33, 307
ErhI	CCWWGG	2 cut(s)	33, 307
FaeI	CATG	7 cut(s)	37, 286, 311, 353, 545, 794, 908
FatI	CATG	7 cut(s)	33, 282, 307, 349, 541, 790, 904
FauNDI	CATATG	1 cut(s)	599
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	5 cut(s)	6, 182, 297, 373, 567
Fsp4HI	GCNGC	5 cut(s)	6, 182, 297, 373, 567
FspBI	CTAG	2 cut(s)	663, 752
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	5 cut(s)	6, 182, 297, 373, 567
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	2 cut(s)	668, 741
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	7 cut(s)	37, 286, 311, 353, 545, 794, 908
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	5 cut(s)	25, 127, 464, 522, 850
HphI	GGTGA	3 cut(s)	22, 644, 693
Hpy166II	GTNNAC	2 cut(s)	505, 592
Hpy188I	TCNGA	4 cut(s)	115, 292, 469, 527
Hpy188III	TCNNGA	5 cut(s)	131, 542, 557, 708, 765
Hpy8I	GTNNAC	2 cut(s)	505, 592
Hpy99I	CGWCG	1 cut(s)	674
HpyAV	CCTTC	2 cut(s)	387, 484
HpyCH4III	ACNGT	3 cut(s)	209, 762, 805
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	233, 375, 482, 569, 812, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	3 cut(s)	243, 405, 784
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	7 cut(s)	37, 286, 311, 353, 545, 794, 908
HspAI	GCGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
LmnI	GCTCC	2 cut(s)	646, 843
Lsp1109I	GCAGC	5 cut(s)	17, 168, 283, 359, 553
LweI	GCATC	3 cut(s)	31, 253, 889
MaeI	CTAG	2 cut(s)	663, 752
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	778
MalI	GATC	6 cut(s)	135, 314, 331, 348, 489, 867
MboI	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
MboII	GAAGA	1 cut(s)	890
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	629
MluCI	AATT	5 cut(s)	105, 534, 635, 774, 908
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	8 cut(s)	151, 238, 277, 320, 578, 715, 787, 793
MseI	TTAA	2 cut(s)	81, 911
MspR9I	CCNGG	3 cut(s)	22, 444, 609
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	3 cut(s)	22, 444, 609
MwoI	GCNNNNNNNGC	1 cut(s)	239
NcoI	CCATGG	2 cut(s)	33, 307
NdeI	CATATG	1 cut(s)	599
NdeII	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
NlaIII	CATG	7 cut(s)	37, 286, 311, 353, 545, 794, 908
NlaIV	GGNNCC	1 cut(s)	740
PagI	TCATGA	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	4 cut(s)	25, 127, 464, 522
PfoI	TCCNGGA	1 cut(s)	442
PkrI	GCNGC	5 cut(s)	7, 183, 298, 374, 568
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
Psp6I	CCWGG	3 cut(s)	20, 442, 607
PspGI	CCWGG	3 cut(s)	20, 442, 607
PspN4I	GGNNCC	1 cut(s)	740
PspPI	GGNCC	4 cut(s)	383, 666, 739, 758
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	2 cut(s)	362, 654
RsaNI	GTAC	2 cut(s)	361, 653
SaqAI	TTAA	2 cut(s)	81, 911
SatI	GCNGC	5 cut(s)	6, 182, 297, 373, 567
Sau3AI	GATC	6 cut(s)	133, 312, 329, 346, 487, 865
Sau96I	GGNCC	4 cut(s)	383, 666, 739, 758
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	3 cut(s)	22, 444, 609
SduI	GDGCHC	1 cut(s)	629
SfaNI	GCATC	3 cut(s)	31, 253, 889
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	2 cut(s)	383, 758
SpeI	ACTAGT	1 cut(s)	751
Sse9I	AATT	5 cut(s)	105, 534, 635, 774, 908
SspI	AATATT	2 cut(s)	70, 832
SspMI	CTAG	2 cut(s)	663, 752
StyD4I	CCNGG	3 cut(s)	20, 442, 607
StyI	CCWWGG	2 cut(s)	33, 307
TaaI	ACNGT	3 cut(s)	209, 762, 805
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	5 cut(s)	149, 165, 520, 672, 897
TasI	AATT	5 cut(s)	105, 534, 635, 774, 908
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	4 cut(s)	25, 127, 464, 522
Tru1I	TTAA	2 cut(s)	81, 911
Tru9I	TTAA	2 cut(s)	81, 911
TscAI	CASTG	3 cut(s)	484, 634, 724
TseI	GCWGC	5 cut(s)	5, 181, 296, 372, 566
TspDTI	ATGAA	2 cut(s)	444, 921
TspRI	CASTG	3 cut(s)	484, 634, 724
VpaK11BI	GGWCC	2 cut(s)	383, 758
XapI	RAATTY	1 cut(s)	534
XspI	CTAG	2 cut(s)	663, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.