Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0024320

Physical Location & Seq

Genomic Coordinates Reverse (-)

21038544 .. 21039585

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1214000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCATCAGCTGTGCTTATCACTCTGCTGTTTCTAATGCCATTGTTCTACTACACCCCCAATGTCATCTTAGCAGCAATCATCATAACCGCTGTGATCATCGATTACCAAGCTCAATACCGGTTGTGGAAGGTTGACAAGCTCGACTTCATGGCCTGCATGTGCGCCTTCCTTGGCGTTCTCTTCATTTCCGTCCCTCTTGGTCTTGCAATTGCAGTTGGAGTATCGATTTTCAAGATTCTTCTTCATGTCACCCGGCCAAACACTATGGCTCTAGGGAACATTCCAGGGACACAAACATACCACAATCTCAACAGATACAGAGAAGTTTCAAGGATTTCTTCATTTCTCATACTAGCAGTTGAGGCACCTATCTACTTTGCAAATTCAACTTACCTAAAAGAAAGGATAATAAGATGGGTTCGTGAGGAAGAAGAAAGGATCAAAGCAAGCAACGAAAAAGCGCTGAAATGTATAATTTTGGACATGACAGCCGTGACAGCCATAGACACGAGTGGTATCGACATGATGTCCGAACTTAGAAAGATGCTGGAAAAGAGATCACTTCAGCTTGTGTTGGCAAACCCTGTGGGAAGTGTGATGGAAAAGCTACAACAATCGAAAACTTTGGAGGCGTTCGGATTGAACGGGCTCTTACGGTTGGAGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009506 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

225

Amino Acids

25.26

Weight (kDa)

9.11

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sulfate_transp	PF00916	1 - 55	8.7e-11	Sulfate permease family
STAS	PF01740	108 - 212	2.7e-22	STAS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024320)

Species	Orthologous Gene IDs
malus_domestica	MD09G1214000.v1.1
pyrus_communis	pycom09g13090
rosa_multiflora	Rmu_sc0008270.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	551
AfeI	AGCGCT	1 cut(s)	465
AgeI	ACCGGT	1 cut(s)	120
AgsI	TTSAA	4 cut(s)	235, 333, 390, 646
AhdI	GACNNNNNGTC	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	6 cut(s)	11, 113, 142, 571, 610, 670
AluI	AGCT	6 cut(s)	11, 113, 142, 571, 610, 670
AlwI	GGATC	1 cut(s)	449
Aor51HI	AGCGCT	1 cut(s)	465
AoxI	GGCC	2 cut(s)	153, 257
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	385
AsiGI	ACCGGT	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	167, 466
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	654
BauI	CACGAG	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	411, 595
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	256
BfaI	CTAG	2 cut(s)	275, 356
BfmI	CTRYAG	1 cut(s)	671
BfoI	RGCGCY	1 cut(s)	467
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	256, 288
BmeRI	GACNNNNNGTC	1 cut(s)	529
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	256, 288
BmsI	GCATC	2 cut(s)	14, 537
BpuMI	CCSGG	1 cut(s)	256
Bsa29I	ATCGAT	2 cut(s)	102, 227
BsaJI	CCNNGG	2 cut(s)	172, 287
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	1 cut(s)	656
Bse118I	RCCGGY	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	2 cut(s)	102, 227
BseDI	CCNNGG	2 cut(s)	172, 287
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	155, 259
BshNI	GGYRCC	1 cut(s)	367
BshTI	ACCGGT	1 cut(s)	120
BshVI	ATCGAT	2 cut(s)	102, 227
BsiSI	CCGG	2 cut(s)	121, 256
BslFI	GGGAC	2 cut(s)	179, 304
BsmFI	GGGAC	2 cut(s)	179, 304
BsnI	GGCC	2 cut(s)	155, 259
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	3 cut(s)	96, 441, 560
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	2 cut(s)	155, 259
BspDI	ATCGAT	2 cut(s)	102, 227
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	2 cut(s)	172, 287
BssMI	GATC	3 cut(s)	96, 441, 560
BssSI	CACGAG	1 cut(s)	511
BssT1I	CCWWGG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	157, 451
BstDEI	CTNAG	2 cut(s)	70, 539
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	2 cut(s)	167, 466
BstKTI	GATC	3 cut(s)	99, 444, 563
BstMBI	GATC	3 cut(s)	96, 441, 560
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 500
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	2 cut(s)	254, 286
BstSFI	CTRYAG	1 cut(s)	671
BstV1I	GCAGC	1 cut(s)	86
Bsu15I	ATCGAT	2 cut(s)	102, 227
BsuRI	GGCC	2 cut(s)	155, 259
BsuTUI	ATCGAT	2 cut(s)	102, 227
Cac8I	GCNNGC	2 cut(s)	157, 451
CfoI	GCGC	2 cut(s)	167, 466
Cfr10I	RCCGGY	1 cut(s)	120
ClaI	ATCGAT	2 cut(s)	102, 227
CspAI	ACCGGT	1 cut(s)	120
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	5 cut(s)	151, 160, 248, 487, 526
DdeI	CTNAG	2 cut(s)	70, 539
DpnI	GATC	3 cut(s)	98, 443, 562
DpnII	GATC	3 cut(s)	96, 441, 560
DriI	GACNNNNNGTC	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	1 cut(s)	188
Eam1105I	GACNNNNNGTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	654
Eco47III	AGCGCT	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	154, 163, 251, 490, 529
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 325, 357
FaqI	GGGAC	2 cut(s)	179, 304
FatI	CATG	5 cut(s)	150, 159, 247, 486, 525
FbaI	TGATCA	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	654
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	275, 356
GlaI	GCGC	2 cut(s)	166, 465
GluI	GCNGC	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	2 cut(s)	155, 259
HapII	CCGG	2 cut(s)	121, 256
HhaI	GCGC	2 cut(s)	167, 466
Hin1II	CATG	5 cut(s)	154, 163, 251, 490, 529
Hin6I	GCGC	2 cut(s)	165, 464
HinP1I	GCGC	2 cut(s)	165, 464
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	121, 256
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	535, 641
Hpy188III	TCNNGA	2 cut(s)	235, 425
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	124, 178
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4V	TGCA	4 cut(s)	159, 209, 215, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 500
HpyF3I	CTNAG	2 cut(s)	70, 539
Hsp92II	CATG	5 cut(s)	154, 163, 251, 490, 529
HspAI	GCGC	2 cut(s)	165, 464
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	3 cut(s)	96, 441, 560
LpnPI	CCDG	7 cut(s)	134, 169, 269, 273, 300, 536, 600
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	14, 537
MaeI	CTAG	2 cut(s)	275, 356
MaeIII	GTNAC	2 cut(s)	250, 496
MalI	GATC	3 cut(s)	98, 443, 562
MboI	GATC	3 cut(s)	96, 441, 560
MboII	GAAGA	6 cut(s)	175, 233, 236, 333, 443, 446
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	3 cut(s)	210, 385, 477
MmeI	TCCRAC	2 cut(s)	199, 642
MnlI	CCTC	4 cut(s)	207, 358, 421, 625
MspA1I	CMGCKG	2 cut(s)	11, 92
MspI	CCGG	2 cut(s)	121, 256
MspR9I	CCNGG	2 cut(s)	256, 288
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	365, 500
NciI	CCSGG	1 cut(s)	256
NdeII	GATC	3 cut(s)	96, 441, 560
NlaIII	CATG	5 cut(s)	154, 163, 251, 490, 529
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	2 cut(s)	250, 496
NspI	RCATGY	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	238
PinAI	ACCGGT	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	11
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	3 cut(s)	96, 441, 560
ScrFI	CCNGG	2 cut(s)	256, 288
SduI	GDGCHC	1 cut(s)	654
SetI	ASST	9 cut(s)	13, 115, 135, 144, 373, 399, 573, 612, 672
SfaNI	GCATC	2 cut(s)	14, 537
SfcI	CTRYAG	1 cut(s)	671
Sse9I	AATT	3 cut(s)	210, 385, 477
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	275, 356
StyD4I	CCNGG	2 cut(s)	254, 286
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	660
TaqI	TCGA	5 cut(s)	102, 144, 227, 522, 620
TasI	AATT	3 cut(s)	210, 385, 477
TfiI	GAWTC	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	250, 496
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	250, 496
TspDTI	ATGAA	4 cut(s)	139, 175, 236, 333
TspGWI	ACGGA	1 cut(s)	181
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	2 cut(s)	275, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.