Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0024320

Physical Location & Seq

Genomic Coordinates Reverse (-)

11647769 .. 11648935

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGCTATACTTTAGTGGCCCTTACCTTGCTCTTGCTATTAAAACTGGCATTATAACTGGGATTTTGTCCCTCACAGTAAGTCACCCAATTCTTGGATCCATCTCTCTTTTAACTGTGGCACTCAGAACTGTGCTTATCACTGTGCTGTTTCTAATGCCATTCGGGCTCATCGATTACCAAGCTGCATACCGGTTGTGGAAAGCTGACAAGCTCGACTTCATGGCCTGCATGTGCTCCTTCTTTGGCGTTCTCTTCATTTCCGTCCCTTTTGGTCTTGTTGGAGTATCAATTTTCAAGATTCTTCTTCACGTCACCCGGCCAAACACTATGGCTCTAGGGAACATTTCGAGGACACAGACAAACCACAATCTCAACAGATACAGAGAAGATTCAAGGATTTCTTCATTTCTCACACTAGCAGTTGAGGCACCTATCTACTTCACAAATTCAACTTACCTACAAGAAAGATGGGTTCGTGAGGAAGAAGAAAGTATCAAAGCAAGCAACGAGAGCGCTCTCAAATGTATAATTTTGGACATGACAGCTGTGACAGCCATCGACACGAGTGGTATCAACATGATGTCCGAACTTAGAAAGATGCTGGAAAAGAGATCACTTCAGCTTGTGTTGGCAAACCCTGTTGGAAGTGTGATGGAAAAGCAACAACAGTCGAAAACTTTGGAGGCTTTTGGATTGAACGGGCTCTATCTTACAGTCGGAGAAGCTGTAGCTGACATTTCATCAGACTGGAAGGCTCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009506 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

255

Amino Acids

28.23

Weight (kDa)

7.69

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAS	PF01740	133 - 242	3.1e-18	STAS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024320)

Species	Orthologous Gene IDs
malus_domestica	MD09G1214000.v1.1
pyrus_communis	pycom09g13090
rosa_multiflora	Rmu_sc0008270.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	427
AccB7I	CCANNNNNTGG	1 cut(s)	92
AclWI	GGATC	2 cut(s)	90, 103
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	602
AfeI	AGCGCT	1 cut(s)	514
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgeI	ACCGGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	295, 393, 450, 697
AjiI	CACGTC	1 cut(s)	310
AluBI	AGCT	7 cut(s)	182, 203, 211, 545, 622, 725, 731
AluI	AGCT	7 cut(s)	182, 203, 211, 545, 622, 725, 731
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	90, 103
Aor51HI	AGCGCT	1 cut(s)	514
AoxI	GGCC	3 cut(s)	16, 222, 317
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	445
AsiGI	ACCGGT	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	74, 304
BamHI	GGATCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	2 cut(s)	168, 705
BauI	CACGAG	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	4 cut(s)	107, 462, 563, 646
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	2 cut(s)	335, 416
BfmI	CTRYAG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	516
BglI	GCCNNNNNGGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	316
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	97, 429
BmrFI	CCNGG	1 cut(s)	316
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	588
BmuI	ACTGGG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	189
Bse1I	ACTGG	3 cut(s)	49, 61, 752
BseCI	ATCGAT	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	3 cut(s)	49, 61, 752
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	3 cut(s)	18, 224, 319
BshNI	GGYRCC	1 cut(s)	427
BshTI	ACCGGT	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	190, 316
BslFI	GGGAC	2 cut(s)	52, 248
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	52, 248
BsnI	GGCC	3 cut(s)	18, 224, 319
Bsp1286I	GDGCHC	3 cut(s)	168, 236, 705
Bsp143I	GATC	2 cut(s)	95, 611
BspANI	GGCC	3 cut(s)	18, 224, 319
BspCNI	CTCAG	1 cut(s)	135
BspDI	ATCGAT	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	97, 429
BspPI	GGATC	2 cut(s)	90, 103
BspT107I	GGYRCC	1 cut(s)	427
BsrFI	RCCGGY	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	49, 61, 752
BssAI	RCCGGY	1 cut(s)	189
BssMI	GATC	2 cut(s)	95, 611
BssSI	CACGAG	1 cut(s)	562
Bst2BI	CACGAG	1 cut(s)	562
Bst4CI	ACNGT	6 cut(s)	76, 115, 130, 142, 669, 715
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	226, 502
BstDEI	CTNAG	2 cut(s)	122, 590
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	2 cut(s)	98, 614
BstMBI	GATC	2 cut(s)	95, 611
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 425, 510, 551
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	18, 224, 319
BsuTUI	ATCGAT	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	226, 502
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	171
CspAI	ACCGGT	1 cut(s)	189
CviAII	CATG	5 cut(s)	220, 229, 538, 577, 762
DdeI	CTNAG	2 cut(s)	122, 590
DpnI	GATC	2 cut(s)	97, 613
DpnII	GATC	2 cut(s)	95, 611
EaeI	YGGCCR	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco24I	GRGCYC	2 cut(s)	168, 705
Eco47III	AGCGCT	1 cut(s)	514
Eco57I	CTGAAG	1 cut(s)	602
EcoT38I	GRGCYC	2 cut(s)	168, 705
FaeI	CATG	5 cut(s)	223, 232, 541, 580, 765
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 385, 417
FaqI	GGGAC	2 cut(s)	52, 248
FatI	CATG	5 cut(s)	219, 228, 537, 576, 761
Fnu4HI	GCNGC	1 cut(s)	183
FriOI	GRGCYC	2 cut(s)	168, 705
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	2 cut(s)	335, 416
GlaI	GCGC	1 cut(s)	514
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	18, 224, 319
HapII	CCGG	2 cut(s)	190, 316
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	5 cut(s)	223, 232, 541, 580, 765
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	298, 389
HpaII	CCGG	2 cut(s)	190, 316
HphI	GGTGA	2 cut(s)	74, 304
Hpy188I	TCNGA	4 cut(s)	125, 586, 719, 745
Hpy188III	TCNNGA	2 cut(s)	295, 476
HpyAV	CCTTC	2 cut(s)	247, 745
HpyCH4III	ACNGT	6 cut(s)	76, 115, 130, 142, 669, 715
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	185, 228
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 425, 510, 551
HpyF3I	CTNAG	2 cut(s)	122, 590
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	223, 232, 541, 580, 765
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	95, 611
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	8 cut(s)	30, 42, 203, 238, 329, 587, 651, 733
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	588
MaeI	CTAG	2 cut(s)	335, 416
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	3 cut(s)	80, 310, 547
MalI	GATC	2 cut(s)	97, 613
MboI	GATC	2 cut(s)	95, 611
MboII	GAAGA	7 cut(s)	244, 293, 296, 393, 398, 494, 497
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	3 cut(s)	168, 236, 705
MluCI	AATT	4 cut(s)	87, 288, 445, 528
MmeI	TCCRAC	3 cut(s)	259, 622, 697
MnlI	CCTC	5 cut(s)	80, 342, 418, 472, 676
MseI	TTAA	2 cut(s)	39, 110
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	2 cut(s)	190, 316
MspR9I	CCNGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	4 cut(s)	163, 425, 510, 551
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	95, 611
NlaIII	CATG	5 cut(s)	223, 232, 541, 580, 765
NlaIV	GGNNCC	2 cut(s)	97, 429
NmuCI	GTSAC	3 cut(s)	80, 310, 547
NspI	RCATGY	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	298, 389
PflMI	CCANNNNNTGG	1 cut(s)	92
PinAI	ACCGGT	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	97, 429
PspPI	GGNCC	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	39, 110
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	95, 611
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	3 cut(s)	168, 236, 705
SfaNI	GCATC	1 cut(s)	588
SfcI	CTRYAG	1 cut(s)	726
Sse9I	AATT	4 cut(s)	87, 288, 445, 528
SspMI	CTAG	2 cut(s)	335, 416
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	6 cut(s)	76, 115, 130, 142, 669, 715
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	5 cut(s)	171, 213, 347, 558, 671
TasI	AATT	4 cut(s)	87, 288, 445, 528
TfiI	GAWTC	2 cut(s)	298, 389
Tru1I	TTAA	2 cut(s)	39, 110
Tru9I	TTAA	2 cut(s)	39, 110
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	3 cut(s)	80, 310, 547
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	3 cut(s)	80, 310, 547
TspDTI	ATGAA	4 cut(s)	208, 244, 393, 729
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	232
XspI	CTAG	2 cut(s)	335, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.