Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008270.1

Orthogroup ID

OG0024320

Physical Location & Seq

Genomic Coordinates Forward (+)

56726 .. 57579

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008270.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggggaatattccaggaacacaaatataccagaatctcagtagatacagagaagctttaaggattccttcatttcttgttctagctatcgaggcacccttctactttgcaaattcaacttacctacaagaaaggatactaagatgggtttgcgaagaagaagagaggataaaagcaaacaatgagggcacactaaaatgtgtaatattagacatgacagctgtgactgccatagacaccagtggtattgacacattgtccgaactcagaaagattctggagaaaagatcgcttcagcttgtgttggcaaatcctgttggaagtgtgatggaaaagctacaccaatcaaagactttggagtcattcggaatgaatggtgtctatctcacagttggagaagctgtagctgacatatcatcagtatggaaggctcgagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0009506 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

146

Amino Acids

16.37

Weight (kDa)

5.89

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024320)

Species	Orthologous Gene IDs
malus_domestica	MD09G1214000.v1.1
pyrus_communis	pycom09g13090
rosa_multiflora	Rmu_sc0008270.1_g000011

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	117
AhdI	GACNNNNNGTC	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	7 cut(s)	56, 86, 221, 298, 337, 401, 407
AluI	AGCT	7 cut(s)	56, 86, 221, 298, 337, 401, 407
Ama87I	CYCGRG	1 cut(s)	432
ApoI	RAATTY	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	94
BccI	CCATC	2 cut(s)	138, 322
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	15
BmeRI	GACNNNNNGTC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bse1I	ACTGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	15
BseMII	CTCAG	2 cut(s)	52, 280
BseNI	ACTGG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	51, 279
BspLI	GGNNCC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	240
BssMI	GATC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	38, 140, 266
BstKTI	GATC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 227
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	247
CviAII	CATG	2 cut(s)	214, 438
CviJI	RGCY	8 cut(s)	56, 86, 221, 298, 337, 401, 407, 431
CviKI_1	RGCY	8 cut(s)	56, 86, 221, 298, 337, 401, 407, 431
DdeI	CTNAG	3 cut(s)	38, 140, 266
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
DrdI	GACNNNNNNGTC	1 cut(s)	358
DriI	GACNNNNNGTC	1 cut(s)	256
DseDI	GACNNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	217, 441
FaiI	YATR	6 cut(s)	28, 215, 233, 413, 424, 439
FalI	AAGNNNNNCTT	2 cut(s)	52, 84
FatI	CATG	2 cut(s)	213, 437
FspBI	CTAG	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	299
Hin1II	CATG	2 cut(s)	217, 441
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	4 cut(s)	34, 64, 274, 359
Hpy188I	TCNGA	3 cut(s)	262, 269, 368
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	78, 109, 421
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 227
HpyF3I	CTNAG	3 cut(s)	38, 140, 266
Hsp92II	CATG	2 cut(s)	217, 441
Kzo9I	GATC	1 cut(s)	287
LpnPI	CCDG	5 cut(s)	27, 44, 253, 263, 327
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	3 cut(s)	167, 170, 173
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	298, 373
MnlI	CCTC	3 cut(s)	85, 159, 178
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	2 cut(s)	196, 421
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	92, 227
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	217, 441
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	34, 64, 274
PfoI	TCCNGGA	1 cut(s)	13
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	96
PspXI	VCTCGAGB	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	196, 421
SaqAI	TTAA	1 cut(s)	59
Sau3AI	GATC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	8 cut(s)	58, 88, 126, 223, 300, 339, 403, 409
SfcI	CTRYAG	1 cut(s)	402
Sfr274I	CTCGAG	1 cut(s)	432
SlaI	CTCGAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	2 cut(s)	196, 421
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	1 cut(s)	112
SspI	AATATT	2 cut(s)	10, 207
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	90, 433
TasI	AATT	1 cut(s)	112
TfiI	GAWTC	3 cut(s)	34, 64, 274
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	60, 386
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	432
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.