MD09G1237700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0022316
Physical Location & Seq
Reverse (-)
30096830 .. 30097324
495 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1237700.v1.1.491

Sequence Viewer

Length: 213 bp
ATGAAGGAAAGAAACCGGCAGCAGAGCATGGCCTTTGAGCCCTATGATATGATGCAATATGTGGAGTTTGCCCATGCAATTGGTGTAGCAATGCGGAACAATTGTCCTACCGCTGAGTGGTGTTGTTGGAAATATGTGCCCGAGGATGTGAAGAAGGCGGTGATGGATCAATTATTATGCAACTATACTTTGATGATACGAACGAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.34

Weight (kDa)

7.65

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022316)

Species Orthologous Gene IDs
malus_domestica MD06G1072100.v1.1 MD09G1237700.v1.1 MD17G1261600.v1.1
pyrus_communis pycom08g10000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 94, 111, 158
AclWI GGATC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 117
AlwI GGATC 1 cut(s) 174
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 141
BanII GRGCYC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 157
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 140
BmsI GCATC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 117
BsnI GGCC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 42, 141
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 3 cut(s) 94, 111, 158
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 96
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 15
CviAII CATG 2 cut(s) 28, 74
CviJI RGCY 2 cut(s) 32, 40
CviKI_1 RGCY 2 cut(s) 32, 40
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 42
Eco88I CYCGRG 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 2 cut(s) 31, 77
FaiI YATR 8 cut(s) 29, 45, 50, 60, 75, 135, 178, 186
FatI CATG 2 cut(s) 27, 73
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
HaeIII GGCC 1 cut(s) 32
HapII CCGG 1 cut(s) 16
Hin1II CATG 2 cut(s) 31, 77
HpaII CCGG 1 cut(s) 16
HphI GGTGA 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 55, 77, 180
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 2 cut(s) 31, 77
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 1 cut(s) 29
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 42
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 163
MfeI CAATTG 2 cut(s) 78, 100
MhlI GDGCHC 2 cut(s) 42, 141
MluCI AATT 3 cut(s) 78, 100, 170
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 1 cut(s) 136
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 16
MunI CAATTG 2 cut(s) 78, 100
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 31, 77
PkrI GCNGC 1 cut(s) 21
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 1 cut(s) 166
SduI GDGCHC 2 cut(s) 42, 141
SfaNI GCATC 1 cut(s) 42
SgeI CNNG 5 cut(s) 28, 40, 86, 152, 154
Sse9I AATT 3 cut(s) 78, 100, 170
SsiI CCGC 3 cut(s) 94, 111, 158
TasI AATT 3 cut(s) 78, 100, 170
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.