MD17G1261600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0022316
Physical Location & Seq
Forward (+)
32240061 .. 32240565
505 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1261600.v1.1.491

Sequence Viewer

Length: 303 bp
ATGGAGGATAAAAACAAGGATCATAGCGTGACCGACATTGACTCGAATGATTTGAGGCAGCATTTTCAATTCGCACATGCGATTGCTGTAGCCATGGGGAACAATTGTCCTACTGCTGAGTGGCATTCTTGGAAAGATGTGCCCAAGAATGCGAAGAAGGCCGTGATGGAAGAATTATTAGGTAAATATACTCTTGATGATGATACGAACGAACAGGTGATGAAGTTGACGGAGGATGCATTGGAGGGAGGATACCATAGGTGGCGTTATGAAGTCCAGCGGAATGGAGGACCATCGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.5

Weight (kDa)

5.44

Isoelectric Point (pI)

30.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022316)

Species Orthologous Gene IDs
malus_domestica MD06G1072100.v1.1 MD09G1237700.v1.1 MD17G1261600.v1.1
pyrus_communis pycom08g10000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 280
AclWI GGATC 1 cut(s) 27
AgsI TTSAA 1 cut(s) 68
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 160, 301
BceAI ACGGC 1 cut(s) 146
BciVI GTATCC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmsI GCATC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 161
BsmI GAATGC 2 cut(s) 124, 154
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 280
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 284
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 290
CviAII CATG 2 cut(s) 77, 94
CviJI RGCY 2 cut(s) 92, 161
CviKI_1 RGCY 2 cut(s) 92, 161
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 80, 97
FaiI YATR 6 cut(s) 24, 78, 95, 189, 258, 270
FatI CATG 2 cut(s) 76, 93
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 2 cut(s) 80, 97
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 1 cut(s) 41
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 228
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 2 cut(s) 80, 97
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 200, 290
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 166, 182
MfeI CAATTG 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 3 cut(s) 68, 103, 173
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 5 cut(s) 48, 226, 238, 242, 281
Mph1103I ATGCAT 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 280
MunI CAATTG 1 cut(s) 103
Mva1269I GAATGC 2 cut(s) 124, 154
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 19
NlaIII CATG 2 cut(s) 80, 97
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 80
PctI GAATGC 2 cut(s) 124, 154
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 290
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 35
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 184, 219, 263
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 290
Sse9I AATT 3 cut(s) 68, 103, 173
SsiI CCGC 1 cut(s) 280
StyI CCWWGG 1 cut(s) 93
TaqI TCGA 2 cut(s) 44, 296
TaqII GACCGA 1 cut(s) 47
TasI AATT 3 cut(s) 68, 103, 173
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 236, 285
TspGWI ACGGA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 290
XceI RCATGY 1 cut(s) 80
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.