MD09G1241700.v1.1

sucrose synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0022353
Physical Location & Seq
Forward (+)
30895927 .. 30899424
3498 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1241700.v1.1.491

Sequence Viewer

Length: 219 bp
ATGAGCTTCCCGCATTATCAGCATCTACTGCTCCAGGTCGAACACCGCAGAGGTCGATGCATTGAAGGAGGAAGTGACAACCCTAAAGGGTTAGCTTGCGGTCCAGGGCCAACAAATGATGGCCCAGGGCGAGGAGCTGAAGGCTTGTGTTGGGCACGTGAGAGACCTTGTAAGAACCATACAGATGATCGGCATCCAAATCTCGCTACCAGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_4_5 Glycos_transf_1

Protein Analysis

73

Amino Acids

7.87

Weight (kDa)

7.76

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022353)

Species Orthologous Gene IDs
malus_domestica MD03G1148200.v1.1 MD09G1241700.v1.1
pyrus_communis pycom08g08290 pycom09g13240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 11, 46, 99
AcuI CTGAAG 1 cut(s) 159
AcvI CACGTG 1 cut(s) 158
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 3 cut(s) 33, 103, 124
AluBI AGCT 3 cut(s) 6, 95, 137
AluI AGCT 3 cut(s) 6, 95, 137
Alw26I GTCTC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 216
AoxI GGCC 2 cut(s) 107, 121
AspS9I GGNCC 3 cut(s) 101, 107, 122
AvaII GGWCC 1 cut(s) 101
BaeGI GKGCMC 1 cut(s) 157
BbrPI CACGTG 1 cut(s) 158
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 3 cut(s) 35, 105, 126
BcoDI GTCTC 1 cut(s) 157
Bme1390I CCNGG 3 cut(s) 35, 105, 126
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 3 cut(s) 101, 107, 122
BmrFI CCNGG 3 cut(s) 35, 105, 126
BmsI GCATC 3 cut(s) 31, 47, 202
BpmI CTGGAG 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 104, 124, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 3 cut(s) 35, 105, 126
BseDI CCNNGG 3 cut(s) 104, 124, 125
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 157
BshFI GGCC 2 cut(s) 109, 123
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 2 cut(s) 109, 123
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 3 cut(s) 11, 46, 99
BspANI GGCC 2 cut(s) 109, 123
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 104, 124, 125
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 3 cut(s) 35, 105, 126
BstAPI GCANNNNNTGC 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 97
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 19, 28
BstNI CCWGG 3 cut(s) 35, 105, 126
BstSCI CCNGG 3 cut(s) 33, 103, 124
BstSLI GKGCMC 1 cut(s) 157
BsuRI GGCC 2 cut(s) 109, 123
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 97
CaiI CAGNNNCTG 1 cut(s) 216
Cfr13I GGNCC 3 cut(s) 101, 107, 122
Csp6I GTAC 1 cut(s) 213
CviJI RGCY 6 cut(s) 6, 95, 109, 123, 137, 144
CviKI_1 RGCY 6 cut(s) 6, 95, 109, 123, 137, 144
CviQI GTAC 1 cut(s) 213
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 159
Eco72I CACGTG 1 cut(s) 158
EcoRII CCWGG 3 cut(s) 33, 103, 124
EcoT22I ATGCAT 1 cut(s) 62
FaiI YATR 1 cut(s) 180
FauI CCCGC 1 cut(s) 18
FokI GGATG 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 17
HaeIII GGCC 2 cut(s) 109, 123
HpyAV CCTTC 2 cut(s) 59, 134
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 28
HpySE526I ACGT 1 cut(s) 157
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 36, 134
LpnPI CCDG 6 cut(s) 20, 47, 90, 111, 117, 138
LweI GCATC 3 cut(s) 31, 47, 202
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 74
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 157
MnlI CCTC 3 cut(s) 44, 62, 125
Mph1103I ATGCAT 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 183
MspR9I CCNGG 3 cut(s) 35, 105, 126
MvaI CCWGG 3 cut(s) 35, 105, 126
MwoI GCNNNNNNNGC 2 cut(s) 19, 28
NdeII GATC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 62
PasI CCCWGGG 1 cut(s) 125
PmaCI CACGTG 1 cut(s) 158
PmlI CACGTG 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 33, 103, 124
PspCI CACGTG 1 cut(s) 158
PspGI CCWGG 3 cut(s) 33, 103, 124
PspPI GGNCC 3 cut(s) 101, 107, 122
PstNI CAGNNNCTG 1 cut(s) 216
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 183
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 3 cut(s) 101, 107, 122
ScrFI CCNGG 3 cut(s) 35, 105, 126
SduI GDGCHC 1 cut(s) 157
SetI ASST 8 cut(s) 8, 39, 55, 97, 139, 160, 169, 218
SfaNI GCATC 3 cut(s) 31, 47, 202
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 183
SsiI CCGC 3 cut(s) 11, 46, 99
StyD4I CCNGG 3 cut(s) 33, 103, 124
TaiI ACGT 1 cut(s) 160
TaqI TCGA 2 cut(s) 39, 55
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.