pycom08g08290

oxidoreductase activity, acting on superoxide radicals as acceptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0022353
Physical Location & Seq
Reverse (-)
6660460 .. 6660723
264 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08290.1

Sequence Viewer

Length: 264 bp
ATGAGCTTCCCGCATTATCAGCATCTACTGCTCCAGGTCGAACACCGCAGAGGTCGATGCGTTAAAGGAGGAAGTGACAACCCTAAAGGGTCAGCTTGCGATCTAGGGCCAGCAGATGAGGGCCTAGGGCGAGGAGCCTATGTTGGGCACGTGAGAGACCTTGTACGAGCCATACAGATGATCGGCATCCAAATCTCACTACCAGTACCTGATCTTGCTCCACCTTCGACCTTCGAGCCACTTCACCTAGAAGACTACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0003674 GO:0003824 GO:0003873 GO:0004784 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006003 GO:0006109 GO:0006110 GO:0006140 GO:0006793 GO:0006796 GO:0006801 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008443 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009636 GO:0009889 GO:0009894 GO:0009987 GO:0010035 GO:0016209 GO:0016301 GO:0016310 GO:0016491 GO:0016721 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0019219 GO:0019220 GO:0019222 GO:0019430 GO:0019637 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0042325 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044262 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046835 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051716 GO:0055114 GO:0062012 GO:0065007 GO:0070887 GO:0071450 GO:0071451 GO:0071704 GO:0072593 GO:0080090 GO:0097237 GO:0098754 GO:0098869 GO:1900371 GO:1900542 GO:1901135 GO:1901700 GO:1901701 GO:1903578 GO:1990748 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko00051 ko00053 ko00670 ko01100 ko01110 ko04013 ko04022 ko04066 ko04068 ko04146 ko04152 ko04211 ko04212 ko04213 ko04371 ko05016 ko05418 map00051 map00053 map00670 map01100 map01110 map04013 map04022 map04066 map04068 map04146 map04152 map04211 map04212 map04213 map04371 map05016 map05418
Pfam Domains
Protein Families
6PF2K His_Phos_1 Sod_Fe_C Sod_Fe_N

Protein Analysis

88

Amino Acids

9.51

Weight (kDa)

6.16

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022353)

Species Orthologous Gene IDs
malus_domestica MD03G1148200.v1.1 MD09G1241700.v1.1
pyrus_communis pycom08g08290 pycom09g13240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 46
AcvI CACGTG 1 cut(s) 151
AfaI GTAC 2 cut(s) 165, 207
AfiI CCNNNNNNNGG 1 cut(s) 144
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 6, 95
AluI AGCT 2 cut(s) 6, 95
Alw26I GTCTC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 2 cut(s) 107, 121
AspA2I CCTAGG 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 107, 121
AsuHPI GGTGA 1 cut(s) 236
AvrII CCTAGG 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 150
BbrPI CACGTG 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 3 cut(s) 104, 125, 248
BlnI CCTAGG 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 107, 121
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 3 cut(s) 31, 47, 195
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 17
BsaAI YACGTR 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 185
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 186
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 150
BshFI GGCC 2 cut(s) 109, 123
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 109, 123
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 100, 180, 211
BspACI CCGC 2 cut(s) 11, 46
BspANI GGCC 2 cut(s) 109, 123
BspLI GGNNCC 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 3 cut(s) 100, 180, 211
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 28
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 97, 111
BstF5I GGATG 1 cut(s) 186
BstKTI GATC 3 cut(s) 103, 183, 214
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 100, 180, 211
BstMWI GCNNNNNNNGC 2 cut(s) 19, 28
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 258
BsuRI GGCC 2 cut(s) 109, 123
BtsCI GGATG 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 97, 111
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 107, 121
Csp6I GTAC 2 cut(s) 164, 206
CviJI RGCY 7 cut(s) 6, 95, 109, 123, 137, 170, 238
CviKI_1 RGCY 7 cut(s) 6, 95, 109, 123, 137, 170, 238
CviQI GTAC 2 cut(s) 164, 206
DpnI GATC 3 cut(s) 102, 182, 213
DpnII GATC 3 cut(s) 100, 180, 211
Eco130I CCWWGG 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 150
Eco72I CACGTG 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaiI YATR 2 cut(s) 141, 173
FauI CCCGC 1 cut(s) 18
FokI GGATG 1 cut(s) 173
FspBI CTAG 3 cut(s) 104, 125, 248
GsuI CTGGAG 1 cut(s) 17
HaeIII GGCC 2 cut(s) 109, 123
HphI GGTGA 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 234, 241
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 28
HpySE526I ACGT 1 cut(s) 150
Kzo9I GATC 3 cut(s) 100, 180, 211
LmnI GCTCC 3 cut(s) 36, 134, 223
LpnPI CCDG 5 cut(s) 20, 47, 123, 216, 222
LweI GCATC 3 cut(s) 31, 47, 195
MaeI CTAG 3 cut(s) 104, 125, 248
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 102, 182, 213
MboI GATC 3 cut(s) 100, 180, 211
MboII GAAGA 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 150
MnlI CCTC 4 cut(s) 44, 62, 112, 125
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 19, 28
NdeII GATC 3 cut(s) 100, 180, 211
NlaIV GGNNCC 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 74
PmaCI CACGTG 1 cut(s) 151
PmlI CACGTG 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 33
PspCI CACGTG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 2 cut(s) 107, 121
PstNI CAGNNNCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 165, 207
RsaNI GTAC 2 cut(s) 164, 206
RseI CAYNNNNRTG 1 cut(s) 176
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 3 cut(s) 100, 180, 211
Sau96I GGNCC 2 cut(s) 107, 121
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 3 cut(s) 31, 47, 195
SmiMI CAYNNNNRTG 1 cut(s) 176
SsiI CCGC 2 cut(s) 11, 46
SspMI CTAG 3 cut(s) 104, 125, 248
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 124
TaiI ACGT 1 cut(s) 153
TaqI TCGA 4 cut(s) 39, 55, 227, 234
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 124
XspI CTAG 3 cut(s) 104, 125, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.