MD10G1140000.v1.1

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
22464419 .. 22466844
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1140000.v1.1.491

Sequence Viewer

Length: 1896 bp
ATGCTGATTGAGCAGGGAGAGGGTGCATCTGTGATCAGAGTCAGTACTCTACCAGATGAAAAGAATATTGACATAATTGCGACATACAGCAACAATCTTGGAGCTATGCAAAGTAGTAGGGTTAAAATGGGGGACCTATCCGCTTCTTGGGTCTTGGAAAATCCTGTTGATGGAAGGCAGGAACATCCAAAGAGATTTGAGATGGCGGAGGATTCATCTCAATCTGGATTGACATTTGAAGAAAAGACTCAGCATCCTACAGATGATCATCAATCTGGTGAAGGTGAACTTCCATATTCTCGTCTATCATCAATGAGCCCAGTGAAGCTCAAGCGTCGGGTAATGCGGCAAGAAAGGAGGAATCTTCGGACTGCAGAGTTGATAGGAAAGGATACAGAAGCTAATAACCAGATGGCTGCAGCAGCAATTGAACGATCAAAAGACTTTGATCCCCTTGTCAAGGGAAAGTACAGCATATGGAGGAGTGATTATGAAAGCCCAAATTCTGATTCAACCTTGAAACTTATGCTGGACCAGATCATAATGGCCAAATCTTACGCAAGCATTGCCATGTCGAAGAATGAAACTGATCTTTTTAATTCTCTCATGAAACACTATAAACTTAGTCAGCATGCTATTGGAGAAGCAAGTTCAGACGCTGAGCTTCATTCAAGTGCACTTAACCGAGCCAAAGCAATGGGCCGTGTTCTCTCTGCAGCGAAAGACAAATTATATGACTGCCTCACTGTCGAAAGGAAGTTGAGAGTCATGCTTCAGTCAACTGAAGAGAATCTAAATGCTTTGAAGAAAAAGAGTGCATTCTTGAATCAGCTTGCTGCAAAAACAGTCCCTAAACCGTTACATTGCCTTCCTCTACAACTTGCATCTGACTATTTCTTATTGGGTTATCATAATAGAGGGGATGCAAACAAAGAAAAGCTTGAGGATCCTTCTCTCTTCCACTATGCCATCTTTTCTGATAATGTTATAGCAACATCAGTGGTTGTTAATTCTACCGTGCTGCATGCGAAGGAACCCAACAAGCATGTTTTTCATGTAGTCACCGATAAACTAAATTATGCTGCTATGAGAATGTGGTTTATTGTCAACCCTCCTGCAGGAGCAACAGTCCAGGTTGAAAACATTGATGATTTCAAATGGCTGAATTCTTCTTCGTGTTCTGTTCTCCGTCAACTTGAATCTGCCAGACTTCAAGAATATTATTTCAAGGCAAATCATCCTTCTTCCCTCTCTATGGGTTCTGACTCTCTTAAATATCGGAATCCAAAATATTTGTCCCTGCTGAATCATCTAAGATTCTACCTTCCTGATGTTTACCCAAAGCTGGACAAGATCCTATTTCTGGATGACGATATTGTAGTTCAGAAGGATTTGACGCCTATTTGGTCTGTTGACCTTCAAGGGAATGTAAATGGTGCAGTGGAGACCTGTAAAGAGAGCTTCCATCGGTATGATAAATATCTCAACTTCTCAAATCCATTAATCTCTGATAACTTTGATTCCAATGCTTGTGGCTGGGCATTCGGCATGAATATCTTCGACTTGAAGGAGTGGAGGAAGCGAAACATCACTGGTATATATCATCGTTGGCAAGACATGAATGAGGACAGAACTCTTTGGAAACTTGGGACATTGCCACCAGGACTTATAACTTTCTACAACCTGACCTATCCGCTGGATCGGGGTTGGCATGCGTTGGGACTTGGCTATGACCCGGCCCTCAACAAAACGGCGATAGAGAATGCAGCTGTGATCCATTACAATGGAAACTACAAGCCATGGTTGGATCTGGCTATTTCAAAGTACAAGGCATATTGGTCAAGATATGTAATGTCTGATAACCCTTATCTTCGACTTTGCAAAATCAGTGAATAA

Protein Analysis

632

Amino Acids

71.94

Weight (kDa)

7.65

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 169 - 245 1.7e-26 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 295 - 604 4.2e-79 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1670
AciI CCGC 4 cut(s) 141, 206, 346, 1694
AclWI GGATC 7 cut(s) 443, 941, 954, 1348, 1707, 1768, 1815
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 2 cut(s) 502, 1165
AcuI CTGAAG 2 cut(s) 758, 804
AcyI GRCGYC 1 cut(s) 1397
AfaI GTAC 3 cut(s) 46, 470, 1826
AfiI CCNNNNNNNGG 7 cut(s) 147, 170, 460, 1118, 1255, 1345, 1363
AjnI CCWGG 2 cut(s) 1131, 1660
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AluBI AGCT 9 cut(s) 104, 328, 401, 664, 832, 940, 1345, 1461, 1769
AluI AGCT 9 cut(s) 104, 328, 401, 664, 832, 940, 1345, 1461, 1769
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 1 cut(s) 1439
Alw44I GTGCAC 1 cut(s) 675
AlwI GGATC 7 cut(s) 443, 941, 954, 1348, 1707, 1768, 1815
AlwNI CAGNNNCTG 1 cut(s) 659
AoxI GGCC 3 cut(s) 546, 700, 1737
ApaLI GTGCAC 1 cut(s) 675
ApeKI GCWGC 8 cut(s) 416, 419, 422, 716, 836, 1021, 1082, 1766
ApoI RAATTY 2 cut(s) 502, 1165
ArsI GACNNNNNNTTYG 2 cut(s) 1280, 1312
AseI ATTAAT 1 cut(s) 1502
Asp700I GAANNNNTTC 1 cut(s) 1556
AspS9I GGNCC 4 cut(s) 133, 532, 700, 1738
AsuC2I CCSGG 1 cut(s) 1736
AsuHPI GGTGA 3 cut(s) 290, 296, 1054
AvaII GGWCC 2 cut(s) 133, 532
BaeGI GKGCMC 1 cut(s) 679
BalI TGGCCA 1 cut(s) 548
BamHI GGATCC 1 cut(s) 946
BanII GRGCYC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 8 cut(s) 403, 431, 434, 728, 823, 1008, 1069, 1778
BccI CCATC 5 cut(s) 164, 196, 406, 977, 1473
BceAI ACGGC 2 cut(s) 687, 1767
BciT130I CCWGG 2 cut(s) 1133, 1662
BciVI GTATCC 1 cut(s) 385
BclI TGATCA 2 cut(s) 33, 265
BcnI CCSGG 1 cut(s) 1736
BcoDI GTCTC 1 cut(s) 1439
BfmI CTRYAG 5 cut(s) 258, 372, 417, 714, 1116
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 9 cut(s) 347, 417, 420, 423, 717, 837, 1022, 1083, 1767
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 9 cut(s) 348, 418, 421, 424, 718, 838, 1023, 1084, 1768
BmcAI AGTACT 1 cut(s) 46
Bme1390I CCNGG 3 cut(s) 1133, 1662, 1736
Bme18I GGWCC 2 cut(s) 133, 532
BmgT120I GGNCC 4 cut(s) 133, 532, 700, 1738
BmiI GGNNCC 3 cut(s) 134, 948, 1035
BmrFI CCNGG 3 cut(s) 1133, 1662, 1736
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 4 cut(s) 35, 262, 893, 913
BmuI ACTGGG 1 cut(s) 314
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 2 cut(s) 314, 962
BpuMI CCSGG 1 cut(s) 1736
BsaBI GATNNNNATC 2 cut(s) 267, 1479
BsaHI GRCGYC 1 cut(s) 1397
BsaI GGTCTC 1 cut(s) 1439
BsaJI CCNNGG 1 cut(s) 1799
BsaXI ACNNNNNCTCC 2 cut(s) 1113, 1143
Bsc4I CCNNNNNNNGG 7 cut(s) 147, 170, 460, 1118, 1255, 1345, 1363
Bse1I ACTGG 2 cut(s) 320, 1597
Bse3DI GCAATG 4 cut(s) 564, 702, 862, 1652
Bse8I GATNNNNATC 2 cut(s) 267, 1479
BseBI CCWGG 2 cut(s) 1133, 1662
BseDI CCNNGG 1 cut(s) 1799
BseGI GGATG 5 cut(s) 184, 253, 928, 1237, 1372
BseJI GATNNNNATC 2 cut(s) 267, 1479
BseLI CCNNNNNNNGG 7 cut(s) 147, 170, 460, 1118, 1255, 1345, 1363
BseMI GCAATG 4 cut(s) 564, 702, 862, 1652
BseMII CTCAG 2 cut(s) 263, 651
BseNI ACTGG 2 cut(s) 320, 1597
BseRI GAGGAG 1 cut(s) 496
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 8 cut(s) 403, 431, 434, 728, 823, 1008, 1069, 1778
BseYI CCCAGC 1 cut(s) 1536
BsgI GTGCAG 1 cut(s) 1458
BshFI GGCC 3 cut(s) 548, 702, 1739
BsiHKAI GWGCWC 1 cut(s) 679
BsiSI CCGG 1 cut(s) 1736
BslFI GGGAC 5 cut(s) 146, 833, 1282, 1663, 1734
BslI CCNNNNNNNGG 7 cut(s) 147, 170, 460, 1118, 1255, 1345, 1363
BsmAI GTCTC 1 cut(s) 1439
BsmFI GGGAC 5 cut(s) 146, 833, 1282, 1663, 1734
BsmI GAATGC 3 cut(s) 818, 1541, 1768
BsnI GGCC 3 cut(s) 548, 702, 1739
Bso31I GGTCTC 1 cut(s) 1439
Bsp1286I GDGCHC 2 cut(s) 320, 679
Bsp1720I GCTNAGC 1 cut(s) 660
Bsp19I CCATGG 1 cut(s) 1799
BspACI CCGC 4 cut(s) 141, 206, 346, 1694
BspANI GGCC 3 cut(s) 548, 702, 1739
BspCNI CTCAG 2 cut(s) 262, 652
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 134, 948, 1035
BspMAI CTGCAG 4 cut(s) 376, 421, 718, 1120
BspPI GGATC 7 cut(s) 443, 941, 954, 1348, 1707, 1768, 1815
BspTNI GGTCTC 1 cut(s) 1439
BsrDI GCAATG 4 cut(s) 564, 702, 862, 1652
BsrI ACTGG 2 cut(s) 320, 1597
BssECI CCNNGG 1 cut(s) 1799
BssNI GRCGYC 1 cut(s) 1397
BssT1I CCWWGG 1 cut(s) 1799
Bst2UI CCWGG 2 cut(s) 1133, 1662
Bst4CI ACNGT 5 cut(s) 748, 847, 858, 1018, 1129
Bst6I CTCTTC 2 cut(s) 780, 962
BstACI GRCGYC 1 cut(s) 1397
BstAPI GCANNNNNTGC 1 cut(s) 566
BstC8I GCNNGC 5 cut(s) 562, 633, 834, 1026, 1713
BstDEI CTNAG 4 cut(s) 249, 623, 660, 1313
BstDSI CCRYGG 1 cut(s) 1799
BstENI CCTNNNNNAGG 2 cut(s) 458, 1116
BstF5I GGATG 5 cut(s) 184, 253, 928, 1237, 1372
BstMAI GTCTC 1 cut(s) 1439
BstMWI GCNNNNNNNGC 3 cut(s) 10, 422, 566
BstNI CCWGG 2 cut(s) 1133, 1662
BstNSI RCATGY 4 cut(s) 635, 1028, 1049, 1715
BstSCI CCNGG 3 cut(s) 1131, 1660, 1734
BstSFI CTRYAG 5 cut(s) 258, 372, 417, 714, 1116
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 8 cut(s) 403, 431, 434, 728, 823, 1008, 1069, 1778
BstX2I RGATCY 3 cut(s) 946, 1353, 1807
BstXI CCANNNNNNTGG 2 cut(s) 697, 1784
BstYI RGATCY 3 cut(s) 946, 1353, 1807
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 3 cut(s) 548, 702, 1739
BtgI CCRYGG 1 cut(s) 1799
BtsCI GGATG 5 cut(s) 184, 253, 928, 1237, 1372
BtsI GCAGTG 1 cut(s) 1446
BtsIMutI CAGTG 6 cut(s) 327, 744, 1005, 1446, 1590, 1894
Cac8I GCNNGC 5 cut(s) 562, 633, 834, 1026, 1713
CaiI CAGNNNCTG 1 cut(s) 659
CciI TCATGA 1 cut(s) 606
Cfr13I GGNCC 4 cut(s) 133, 532, 700, 1738
CseI GACGC 3 cut(s) 323, 665, 1405
Csp6I GTAC 3 cut(s) 45, 469, 1825
CspCI CAANNNNNGTGG 4 cut(s) 981, 1016, 1513, 1548
CviQI GTAC 3 cut(s) 45, 469, 1825
DdeI CTNAG 4 cut(s) 249, 623, 660, 1313
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 2 cut(s) 780, 962
EarI CTCTTC 2 cut(s) 780, 962
EciI GGCGGA 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 1799
Eco24I GRGCYC 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 1439
Eco47I GGWCC 2 cut(s) 133, 532
Eco57I CTGAAG 2 cut(s) 758, 804
EcoNI CCTNNNNNAGG 2 cut(s) 458, 1116
EcoO109I RGGNCCY 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 1165
EcoRII CCWGG 2 cut(s) 1131, 1660
EcoT14I CCWWGG 1 cut(s) 1799
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 1799
FalI AAGNNNNNCTT 4 cut(s) 273, 305, 924, 956
FaqI GGGAC 5 cut(s) 146, 833, 1282, 1663, 1734
FauNDI CATATG 1 cut(s) 476
FbaI TGATCA 2 cut(s) 33, 265
Fnu4HI GCNGC 9 cut(s) 347, 417, 420, 423, 717, 837, 1022, 1083, 1767
FokI GGATG 5 cut(s) 171, 240, 935, 1224, 1379
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 9 cut(s) 347, 417, 420, 423, 717, 837, 1022, 1083, 1767
GluI GCNGC 9 cut(s) 347, 417, 420, 423, 717, 837, 1022, 1083, 1767
GsaI CCCAGC 1 cut(s) 1540
HaeIII GGCC 3 cut(s) 548, 702, 1739
HapII CCGG 1 cut(s) 1736
HgaI GACGC 3 cut(s) 323, 665, 1405
Hin1I GRCGYC 1 cut(s) 1397
HincII GTYRAC 4 cut(s) 780, 1108, 1193, 1414
HindII GTYRAC 4 cut(s) 780, 1108, 1193, 1414
HindIII AAGCTT 1 cut(s) 938
HpaII CCGG 1 cut(s) 1736
HphI GGTGA 3 cut(s) 290, 296, 1054
Hpy166II GTNNAC 7 cut(s) 287, 677, 780, 1108, 1193, 1336, 1414
Hpy188III TCNNGA 7 cut(s) 225, 607, 823, 1214, 1328, 1364, 1842
Hpy8I GTNNAC 7 cut(s) 287, 677, 780, 1108, 1193, 1336, 1414
Hpy99I CGWCG 1 cut(s) 339
HpyCH4III ACNGT 5 cut(s) 748, 847, 858, 1018, 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 422, 566
HpyF3I CTNAG 4 cut(s) 249, 623, 660, 1313
Hsp92I GRCGYC 1 cut(s) 1397
Ksp22I TGATCA 2 cut(s) 33, 265
LmnI GCTCC 2 cut(s) 101, 1121
Lsp1109I GCAGC 8 cut(s) 403, 431, 434, 728, 823, 1008, 1069, 1778
LweI GCATC 4 cut(s) 35, 262, 893, 913
MaeIII GTNAC 2 cut(s) 858, 1060
MfeI CAATTG 1 cut(s) 426
MflI RGATCY 3 cut(s) 946, 1353, 1807
MhlI GDGCHC 2 cut(s) 320, 679
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 8 cut(s) 75, 426, 502, 598, 728, 1009, 1075, 1165
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 4 cut(s) 48, 241, 774, 1259
MmeI TCCRAC 1 cut(s) 1785
Mox20I TGGCCA 1 cut(s) 548
MroXI GAANNNNTTC 1 cut(s) 1556
MscI TGGCCA 1 cut(s) 548
MseI TTAA 6 cut(s) 123, 597, 681, 1008, 1272, 1502
MslI CAYNNNNRTG 4 cut(s) 569, 672, 1470, 1782
Msp20I TGGCCA 1 cut(s) 548
MspA1I CMGCKG 2 cut(s) 1696, 1769
MspI CCGG 1 cut(s) 1736
MspR9I CCNGG 3 cut(s) 1133, 1662, 1736
MunI CAATTG 1 cut(s) 426
Mva1269I GAATGC 3 cut(s) 818, 1541, 1768
MvaI CCWGG 2 cut(s) 1133, 1662
MwoI GCNNNNNNNGC 3 cut(s) 10, 422, 566
NciI CCSGG 1 cut(s) 1736
NcoI CCATGG 1 cut(s) 1799
NdeI CATATG 1 cut(s) 476
NlaIV GGNNCC 3 cut(s) 134, 948, 1035
NmuCI GTSAC 1 cut(s) 1060
NspI RCATGY 4 cut(s) 635, 1028, 1049, 1715
PaeI GCATGC 3 cut(s) 635, 1028, 1715
PagI TCATGA 1 cut(s) 606
PctI GAATGC 3 cut(s) 818, 1541, 1768
PdmI GAANNNNTTC 1 cut(s) 1556
PkrI GCNGC 9 cut(s) 348, 418, 421, 424, 718, 838, 1023, 1084, 1768
PleI GAGTC 4 cut(s) 47, 241, 773, 1259
PpsI GAGTC 4 cut(s) 47, 241, 773, 1259
PpuMI RGGWCCY 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 1502
PsiI TTATAA 1 cut(s) 1670
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 1131, 1660
PspFI CCCAGC 1 cut(s) 1536
PspGI CCWGG 2 cut(s) 1131, 1660
PspN4I GGNNCC 3 cut(s) 134, 948, 1035
PspPI GGNCC 4 cut(s) 133, 532, 700, 1738
PspPPI RGGWCCY 1 cut(s) 133
PstI CTGCAG 4 cut(s) 376, 421, 718, 1120
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 3 cut(s) 946, 1353, 1807
PvuII CAGCTG 1 cut(s) 1769
RsaI GTAC 3 cut(s) 46, 470, 1826
RsaNI GTAC 3 cut(s) 45, 469, 1825
RseI CAYNNNNRTG 4 cut(s) 569, 672, 1470, 1782
SaqAI TTAA 6 cut(s) 123, 597, 681, 1008, 1272, 1502
SatI GCNGC 9 cut(s) 347, 417, 420, 423, 717, 837, 1022, 1083, 1767
Sau96I GGNCC 4 cut(s) 133, 532, 700, 1738
SbfI CCTGCAGG 1 cut(s) 1120
ScaI AGTACT 1 cut(s) 46
SchI GAGTC 4 cut(s) 48, 241, 774, 1259
ScrFI CCNGG 3 cut(s) 1133, 1662, 1736
SdaI CCTGCAGG 1 cut(s) 1120
SduI GDGCHC 2 cut(s) 320, 679
SfaNI GCATC 4 cut(s) 35, 262, 893, 913
SfcI CTRYAG 5 cut(s) 258, 372, 417, 714, 1116
SinI GGWCC 2 cut(s) 133, 532
SmiMI CAYNNNNRTG 4 cut(s) 569, 672, 1470, 1782
SmlI CTYRAG 2 cut(s) 329, 941
SmoI CTYRAG 2 cut(s) 329, 941
SphI GCATGC 3 cut(s) 635, 1028, 1715
Sse8387I CCTGCAGG 1 cut(s) 1120
Sse9I AATT 8 cut(s) 75, 426, 502, 598, 728, 1009, 1075, 1165
SsiI CCGC 4 cut(s) 141, 206, 346, 1694
SspI AATATT 3 cut(s) 67, 1220, 1292
StyD4I CCNGG 3 cut(s) 1131, 1660, 1734
StyI CCWWGG 1 cut(s) 1799
TaaI ACNGT 5 cut(s) 748, 847, 858, 1018, 1129
TaqI TCGA 4 cut(s) 575, 750, 1560, 1873
TasI AATT 8 cut(s) 75, 426, 502, 598, 728, 1009, 1075, 1165
TatI WGTACW 3 cut(s) 44, 468, 1824
TauI GCSGC 1 cut(s) 349
Tru1I TTAA 6 cut(s) 123, 597, 681, 1008, 1272, 1502
Tru9I TTAA 6 cut(s) 123, 597, 681, 1008, 1272, 1502
TscAI CASTG 6 cut(s) 327, 751, 1005, 1446, 1597, 1894
TseFI GTSAC 1 cut(s) 1060
TseI GCWGC 8 cut(s) 416, 419, 422, 716, 836, 1021, 1082, 1766
Tsp45I GTSAC 1 cut(s) 1060
TspDTI ATGAA 9 cut(s) 72, 204, 507, 597, 623, 656, 1043, 1565, 1634
TspGWI ACGGA 1 cut(s) 1178
TspRI CASTG 6 cut(s) 327, 751, 1005, 1446, 1597, 1894
VneI GTGCAC 1 cut(s) 675
VpaK11BI GGWCC 2 cut(s) 133, 532
VspI ATTAAT 1 cut(s) 1502
XagI CCTNNNNNAGG 2 cut(s) 458, 1116
XapI RAATTY 2 cut(s) 502, 1165
XceI RCATGY 4 cut(s) 635, 1028, 1049, 1715
XmnI GAANNNNTTC 1 cut(s) 1556
ZrmI AGTACT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.