Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007054

Physical Location & Seq

Genomic Coordinates Reverse (-)

16727570 .. 16729154

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13150.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGCAGGACCAGATCATAATGGCCAAAGCTTACGCAAACATTGCCAAGTCTAAGAATGAAACCGATCTTTTTAATTCTCTCATGAAACACTTTAAACTCAGTCAGCATGCTATTGGAGAAGCAAGTTCAGACCTTGAGCTTCATTCAAGTGCATTTAATCGAGCAAAAGCAATGGGCCGTGTTCTCTCCGCGGCAAAGGACAAACTATATGACTGCCTCACTGTGGAAAGGAAGTTAAGAGCCATGCTTCAGTCAACTGAAGAGAAAGTAAACGATTTGAAGAAAAAGAGTGCATTCTTGATTCAGCTTGCTGCAAAAATAGTCCCTAAACCATTACATTGCCTTCCTCTACAACTTGCATCTGACTATTTCTTGTTGGGTTACCATAATAGAGAGGATGCGAACAAAGAAAAGCTTGAAGATCCTTCTCTCTACCACTATGCTATATTTTCTGATAATGTTTTAGCAACATCAGTGGTTGTTAATTCTACCGTGGTGCATGCGAAGGAACCCAATAAGCATGTTTTTCATGTAGTCACTGACAAACTAAATTATGCTGCTATGAGAATGTGGTTTATTGTCAACCCTCCTGCAGGAGGAGCAACAGTCCAGGTTGAAAACATTGATGATTTCAAGTGGCTAAATTCTTCTTCGTGTTCTGTTCTACGTCAGCTTGAATCTGCCAGACTTCAAGAATATTATTTCAAGGCAAATGATCCTTCTTCCCTCTCTATTGGTTCTGACCATCTCAAATATCGGAATCCAAAATATTTGTCCCTGCTGAATCATCTGAGATTCTATCTTCCGGATGTTTACCCGAAGCTGGATAAGATTCTATTTCTGGATGATGATATTGTCATTCAGAAGGATTTGACACCTCTTTGGTCTGTTGATCTTCACGGGAATGTAAATGGTGCAGTAGAGACCTGTAAAGAGAGCTTCCATCGATATGATAAATATCTCAACTTCTCAAATCCATTAATCTCTGCGAACTTCGATCCCCATGCTTGTGGCTGGGCGTACGGCATGAATATCTTCGACTTGAAGGAGTGGAGGAAGCGAAACATCACTGGAATATATCATCGTTGGCAAGACATGAATGAAGATAGAACTCTTTGGAAACTTGGGACATTGCCACCAGGACTTATAACTTTTTACAACCTGACCTATCCGCTGGATCGATCACAAGCTTGGCATGCGTTGGGACTCGGCTATGACCCAGCCCTCAACCAAACAGCGATAAAGAATGCAGCTGTGATCCATTACAACGGAAACTACAAGCCATGGTTGGATCTGGCTATTTCAAAATACAAGGCATACTGGTCAAAATATGTAATGTTTGATAACCCTTACCTTCGACTTTGTAGAATCAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

460

Amino Acids

52.83

Weight (kDa)

8.7

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38270 AT4G38270
fragaria_vesca	FvH4_2g16670 FvH4_2g16670 FvH4_2g16670
malus_domestica	MD05G1134900.v1.1 MD10G1140000.v1.1
prunus_persica	Prupe.8G178800_v2.0.a1 Prupe.8G178800_v2.0.a1 Prupe.8G178800_v2.0.a1 Prupe.8G178800_v2.0.a1 Prupe.8G178800_v2.0.a1
pyrus_communis	pycom05g13150 pycom10g11890
rosa_chinensis	RchiOBHm_Chr6g0280811
rosa_laevigata	RLG00000013028
rosa_multiflora	Rmu_sc0002455.1_g000008
rosa_roxburghii	Rroxscaffold_7G00187610
rosa_rugosa	Rorug06G0134700 Rorug06G0134700
rosa_samantha	Rh6AG248000 Rh6BG249500 Rh6CG250700 Rh6DG242300
rosa_wichuraiana	Rw6G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1148
AccII	CGCG	1 cut(s)	191
AccIII	TCCGGA	1 cut(s)	805
AciI	CCGC	3 cut(s)	189, 191, 1172
AclWI	GGATC	6 cut(s)	416, 710, 992, 1185, 1252, 1299
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	643
AcuI	CTGAAG	2 cut(s)	233, 279
AfaI	GTAC	1 cut(s)	1022
AfiI	CCNNNNNNNGG	4 cut(s)	223, 593, 596, 823
AjnI	CCWGG	2 cut(s)	609, 1138
AluBI	AGCT	9 cut(s)	29, 139, 307, 415, 673, 823, 939, 1190, 1253
AluI	AGCT	9 cut(s)	29, 139, 307, 415, 673, 823, 939, 1190, 1253
Alw26I	GTCTC	1 cut(s)	917
AlwI	GGATC	6 cut(s)	416, 710, 992, 1185, 1252, 1299
Aor13HI	TCCGGA	1 cut(s)	805
AoxI	GGCC	2 cut(s)	21, 175
ApeKI	GCWGC	3 cut(s)	311, 557, 1250
ApoI	RAATTY	1 cut(s)	643
ArsI	GACNNNNNNTTYG	2 cut(s)	758, 790
AseI	ATTAAT	1 cut(s)	980
Asp700I	GAANNNNTTC	1 cut(s)	1034
AspS9I	GGNCC	2 cut(s)	7, 175
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	298, 544, 1262
BccI	CCATC	2 cut(s)	753, 951
BceAI	ACGGC	2 cut(s)	162, 1039
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BciT130I	CCWGG	2 cut(s)	611, 1140
BcoDI	GTCTC	1 cut(s)	917
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	4 cut(s)	192, 312, 558, 1251
BlsI	GCNGC	4 cut(s)	193, 313, 559, 1252
Bme1390I	CCNGG	2 cut(s)	611, 1140
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	7, 175
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	2 cut(s)	611, 1140
BmsI	GCATC	2 cut(s)	368, 388
BpuEI	CTTGAG	1 cut(s)	155
Bsa29I	ATCGAT	2 cut(s)	946, 1180
BsaBI	GATNNNNATC	1 cut(s)	957
BsaI	GGTCTC	1 cut(s)	917
BsaJI	CCNNGG	3 cut(s)	189, 492, 1283
BsaWI	WCCGGW	1 cut(s)	805
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 593, 596, 823
Bse1I	ACTGG	2 cut(s)	1075, 1325
Bse3DI	GCAATG	4 cut(s)	39, 177, 337, 1130
Bse8I	GATNNNNATC	1 cut(s)	957
BseAI	TCCGGA	1 cut(s)	805
BseBI	CCWGG	2 cut(s)	611, 1140
BseCI	ATCGAT	2 cut(s)	946, 1180
BseDI	CCNNGG	3 cut(s)	189, 492, 1283
BseGI	GGATG	3 cut(s)	403, 814, 850
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	4 cut(s)	223, 593, 596, 823
BseMI	GCAATG	4 cut(s)	39, 177, 337, 1130
BseMII	CTCAG	2 cut(s)	112, 782
BseNI	ACTGG	2 cut(s)	1075, 1325
BseRI	GAGGAG	1 cut(s)	612
BseXI	GCAGC	3 cut(s)	298, 544, 1262
BseYI	CCCAGC	2 cut(s)	1014, 1219
BsgI	GTGCAG	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	23, 177
BshVI	ATCGAT	2 cut(s)	946, 1180
BsiSI	CCGG	1 cut(s)	806
BsiWI	CGTACG	1 cut(s)	1020
BslFI	GGGAC	4 cut(s)	308, 760, 1141, 1218
BslI	CCNNNNNNNGG	4 cut(s)	223, 593, 596, 823
BsmAI	GTCTC	1 cut(s)	917
BsmFI	GGGAC	4 cut(s)	308, 760, 1141, 1218
BsmI	GAATGC	2 cut(s)	293, 1252
BsnI	GGCC	2 cut(s)	23, 177
Bso31I	GGTCTC	1 cut(s)	917
Bsp13I	TCCGGA	1 cut(s)	805
Bsp19I	CCATGG	1 cut(s)	1283
BspACI	CCGC	3 cut(s)	189, 191, 1172
BspANI	GGCC	2 cut(s)	23, 177
BspCNI	CTCAG	2 cut(s)	111, 783
BspDI	ATCGAT	2 cut(s)	946, 1180
BspEI	TCCGGA	1 cut(s)	805
BspFNI	CGCG	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	510
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	6 cut(s)	416, 710, 992, 1185, 1252, 1299
BspTNI	GGTCTC	1 cut(s)	917
BsrDI	GCAATG	4 cut(s)	39, 177, 337, 1130
BsrI	ACTGG	2 cut(s)	1075, 1325
BssECI	CCNNGG	3 cut(s)	189, 492, 1283
BssT1I	CCWWGG	1 cut(s)	1283
Bst2UI	CCWGG	2 cut(s)	611, 1140
Bst4CI	ACNGT	3 cut(s)	223, 493, 607
Bst6I	CTCTTC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	4 cut(s)	108, 309, 501, 1197
BstDEI	CTNAG	3 cut(s)	51, 98, 791
BstDSI	CCRYGG	3 cut(s)	189, 492, 1283
BstEII	GGTNACC	1 cut(s)	380
BstENI	CCTNNNNNAGG	2 cut(s)	591, 594
BstF5I	GGATG	3 cut(s)	403, 814, 850
BstFNI	CGCG	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	917
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 599, 1196
BstNI	CCWGG	2 cut(s)	611, 1140
BstNSI	RCATGY	4 cut(s)	110, 503, 524, 1199
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	609, 1138
BstSFI	CTRYAG	1 cut(s)	591
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	298, 544, 1262
BstX2I	RGATCY	2 cut(s)	421, 1291
BstXI	CCANNNNNNTGG	1 cut(s)	1010
BstYI	RGATCY	2 cut(s)	421, 1291
Bsu15I	ATCGAT	2 cut(s)	946, 1180
BsuRI	GGCC	2 cut(s)	23, 177
BsuTUI	ATCGAT	2 cut(s)	946, 1180
BtgI	CCRYGG	3 cut(s)	189, 492, 1283
BtsCI	GGATG	3 cut(s)	403, 814, 850
BtsIMutI	CAGTG	5 cut(s)	219, 480, 537, 1068, 1378
Cac8I	GCNNGC	4 cut(s)	108, 309, 501, 1197
CciI	TCATGA	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	7, 175
Cfr42I	CCGCGG	1 cut(s)	192
ClaI	ATCGAT	2 cut(s)	946, 1180
Csp6I	GTAC	1 cut(s)	1021
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviQI	GTAC	1 cut(s)	1021
DdeI	CTNAG	3 cut(s)	51, 98, 791
DraI	TTTAAA	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	1283
Eco31I	GGTCTC	1 cut(s)	917
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	233, 279
Eco91I	GGTNACC	1 cut(s)	380
EcoNI	CCTNNNNNAGG	2 cut(s)	591, 594
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	609, 1138
EcoT14I	CCWWGG	1 cut(s)	1283
ErhI	CCWWGG	1 cut(s)	1283
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	4 cut(s)	308, 760, 1141, 1218
Fnu4HI	GCNGC	4 cut(s)	192, 312, 558, 1251
FokI	GGATG	3 cut(s)	410, 821, 857
Fsp4HI	GCNGC	4 cut(s)	192, 312, 558, 1251
GluI	GCNGC	4 cut(s)	192, 312, 558, 1251
GsaI	CCCAGC	2 cut(s)	1018, 1223
HaeIII	GGCC	2 cut(s)	23, 177
HapII	CCGG	1 cut(s)	806
HincII	GTYRAC	2 cut(s)	255, 583
HindII	GTYRAC	2 cut(s)	255, 583
HindIII	AAGCTT	3 cut(s)	27, 413, 1188
HinfI	GANTC	8 cut(s)	301, 677, 760, 784, 795, 832, 1206, 1368
HpaII	CCGG	1 cut(s)	806
Hpy166II	GTNNAC	4 cut(s)	255, 271, 583, 814
Hpy188I	TCNGA	7 cut(s)	130, 364, 454, 742, 759, 792, 864
Hpy188III	TCNNGA	5 cut(s)	82, 298, 692, 806, 842
Hpy8I	GTNNAC	4 cut(s)	255, 271, 583, 814
HpyAV	CCTTC	7 cut(s)	353, 435, 499, 729, 859, 1039, 1364
HpyCH4III	ACNGT	3 cut(s)	223, 493, 607
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	9 cut(s)	4, 152, 293, 314, 359, 499, 593, 917, 1250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 599, 1196
HpyF3I	CTNAG	3 cut(s)	51, 98, 791
HpySE526I	ACGT	1 cut(s)	667
Kpn2I	TCCGGA	1 cut(s)	805
KspI	CCGCGG	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	3 cut(s)	298, 544, 1262
LweI	GCATC	2 cut(s)	368, 388
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	380, 535
MflI	RGATCY	2 cut(s)	421, 1291
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	4 cut(s)	73, 484, 550, 643
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	1200
MmeI	TCCRAC	1 cut(s)	1269
MnlI	CCTC	9 cut(s)	227, 357, 388, 590, 597, 737, 888, 1047, 1235
Mox20I	TGGCCA	1 cut(s)	23
MroI	TCCGGA	1 cut(s)	805
MroXI	GAANNNNTTC	1 cut(s)	1034
MscI	TGGCCA	1 cut(s)	23
MseI	TTAA	6 cut(s)	72, 93, 156, 236, 483, 980
MslI	CAYNNNNRTG	4 cut(s)	147, 903, 948, 1008
Msp20I	TGGCCA	1 cut(s)	23
MspA1I	CMGCKG	3 cut(s)	191, 1174, 1253
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	2 cut(s)	611, 1140
Mva1269I	GAATGC	2 cut(s)	293, 1252
MvaI	CCWGG	2 cut(s)	611, 1140
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	41, 599, 1196
NcoI	CCATGG	1 cut(s)	1283
NlaIV	GGNNCC	1 cut(s)	510
NmeAIII	GCCGAG	1 cut(s)	1188
NmuCI	GTSAC	1 cut(s)	535
NspI	RCATGY	4 cut(s)	110, 503, 524, 1199
PaeI	GCATGC	3 cut(s)	110, 503, 1199
PagI	TCATGA	1 cut(s)	81
PctI	GAATGC	2 cut(s)	293, 1252
PdmI	GAANNNNTTC	1 cut(s)	1034
PfeI	GAWTC	7 cut(s)	301, 677, 760, 784, 795, 832, 1368
Pfl23II	CGTACG	1 cut(s)	1020
PkrI	GCNGC	4 cut(s)	193, 313, 559, 1252
PleI	GAGTC	1 cut(s)	1200
PpsI	GAGTC	1 cut(s)	1200
PshBI	ATTAAT	1 cut(s)	980
PsiI	TTATAA	1 cut(s)	1148
Psp6I	CCWGG	2 cut(s)	609, 1138
PspEI	GGTNACC	1 cut(s)	380
PspFI	CCCAGC	2 cut(s)	1014, 1219
PspGI	CCWGG	2 cut(s)	609, 1138
PspLI	CGTACG	1 cut(s)	1020
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	2 cut(s)	7, 175
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	421, 1291
PvuII	CAGCTG	1 cut(s)	1253
RsaI	GTAC	1 cut(s)	1022
RsaNI	GTAC	1 cut(s)	1021
RseI	CAYNNNNRTG	4 cut(s)	147, 903, 948, 1008
SacII	CCGCGG	1 cut(s)	192
SaqAI	TTAA	6 cut(s)	72, 93, 156, 236, 483, 980
SatI	GCNGC	4 cut(s)	192, 312, 558, 1251
Sau96I	GGNCC	2 cut(s)	7, 175
SbfI	CCTGCAGG	1 cut(s)	595
SchI	GAGTC	1 cut(s)	1200
ScrFI	CCNGG	2 cut(s)	611, 1140
SdaI	CCTGCAGG	1 cut(s)	595
SfaNI	GCATC	2 cut(s)	368, 388
SfcI	CTRYAG	1 cut(s)	591
Sfr303I	CCGCGG	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	4 cut(s)	147, 903, 948, 1008
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
SphI	GCATGC	3 cut(s)	110, 503, 1199
Sse8387I	CCTGCAGG	1 cut(s)	595
Sse9I	AATT	4 cut(s)	73, 484, 550, 643
SsiI	CCGC	3 cut(s)	189, 191, 1172
SspI	AATATT	2 cut(s)	698, 770
StyD4I	CCNGG	2 cut(s)	609, 1138
StyI	CCWWGG	1 cut(s)	1283
TaaI	ACNGT	3 cut(s)	223, 493, 607
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	6 cut(s)	160, 946, 996, 1038, 1180, 1357
TasI	AATT	4 cut(s)	73, 484, 550, 643
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	7 cut(s)	301, 677, 760, 784, 795, 832, 1368
Tru1I	TTAA	6 cut(s)	72, 93, 156, 236, 483, 980
Tru9I	TTAA	6 cut(s)	72, 93, 156, 236, 483, 980
TscAI	CASTG	5 cut(s)	226, 480, 544, 1075, 1378
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	3 cut(s)	311, 557, 1250
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	7 cut(s)	72, 98, 131, 518, 1043, 1112, 1116
TspGWI	ACGGA	1 cut(s)	1284
TspRI	CASTG	5 cut(s)	226, 480, 544, 1075, 1378
VpaK11BI	GGWCC	1 cut(s)	7
VspI	ATTAAT	1 cut(s)	980
XagI	CCTNNNNNAGG	2 cut(s)	591, 594
XapI	RAATTY	1 cut(s)	643
XceI	RCATGY	4 cut(s)	110, 503, 524, 1199
XmnI	GAANNNNTTC	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.