Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0024224

Physical Location & Seq

Genomic Coordinates Reverse (-)

23822140 .. 23825700

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1151300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGTTGTTATCAATGAATGGCATACAACATCGGAAAAACTCTTGGCAAGATGGTGTATCAGGGACTAATTGTCCAATTCATGCTGGATGGAATTGGACGTACGAATTTCAGGTTAAAGATCAAATAGGGAGTGGATATGGTGGAATCAACATAAACAATCGAGCTGTTATTCCACTACCTTTTGAGGTGCCAGATAGAGATATTACCTCTTTATTACTGATTGGTGCACAAAGAGTCATAAGCCCCCGTTTTGTCAATTCATCTTCATGGGCTAAAGCTACTGGGGTTGCCATCTTGCACTACTCCAATTCTCAAGGACCTGCATCAGGTCCTCTCCCTGATCCTCCTAAGGATTACGACACATTTTACTCAATGAATCAAGGAATATCCCTTGATTTCCCGAATAAACTGATGAACAGACCTGCCAAAGTCGACACATCCCTGATTAATGGTACTTTCAAAGGTTTCATGGAAATCATCTTTCAGAACAATGACACCACTGTTCAGAACTACCATTTGGATGGCTCTGCATTTTTTGTCGTGGGTATGGATGTGGGAGTGTGGACAGAGAATAGCAGAAGCACTTACAACAAATGGAATGGCGTTGCTCGCTGCACAACACAGGTACACCTTGGTTCAATGGGCTTGTTGCACACACGCACATTTGCATGCGCATGGAATGGAACAAGATTCTTGGTCTTCCCTGGATCTTGGACAGCCATATTGGTTGTTCTTGACAACGCCGGAATTTGGAACCTTCGTACACAGAATCTGGACTCATGGTATCTAGGCCAAGAAGTTTATTTGAGTGTCGTGAATCGCGAGAATGACCAAAACGAAAATTCTTTGCCTGACAATACCATATATTGTGGACTACTTTCCTCTTTACAGAAGATATCAGAACTCCTCCAAGTTTTCGTCCATTTATTTTACTCGTCCATCGAAATTTATATTTATAGAATCATTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

324

Amino Acids

36.29

Weight (kDa)

6.37

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	2 - 44	2.2e-12	Multicopper oxidase
Cu-oxidase_2	PF07731	127 - 217	1.9e-16	Multicopper oxidase
Cu-oxidase_2	PF07731	232 - 276	4.9e-06	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024224)

Species	Orthologous Gene IDs
malus_domestica	MD10G1151300.v1.1
pyrus_communis	pycom10g13040
rosa_samantha	Rh7CG207900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	673
Acc36I	ACCTGC	2 cut(s)	328, 430
AccB1I	GGYRCC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	822
AclWI	GGATC	2 cut(s)	335, 715
AcsI	RAATTY	4 cut(s)	104, 747, 841, 945
AfaI	GTAC	4 cut(s)	101, 454, 627, 763
AfiI	CCNNNNNNNGG	2 cut(s)	326, 750
AgsI	TTSAA	2 cut(s)	460, 639
AhdI	GACNNNNNGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	703
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	2 cut(s)	164, 278
AluI	AGCT	2 cut(s)	164, 278
Alw21I	GWGCWC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	225
AlwI	GGATC	2 cut(s)	335, 715
AlwNI	CAGNNNCTG	1 cut(s)	772
AoxI	GGCC	1 cut(s)	790
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	612
ApoI	RAATTY	4 cut(s)	104, 747, 841, 945
AseI	ATTAAT	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	674
AspS9I	GGNCC	2 cut(s)	317, 329
AvaII	GGWCC	2 cut(s)	317, 329
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	599
BccI	CCATC	5 cut(s)	44, 81, 299, 515, 947
BciT130I	CCWGG	1 cut(s)	705
BfaI	CTAG	1 cut(s)	788
BfuAI	ACCTGC	2 cut(s)	328, 430
BisI	GCNGC	1 cut(s)	613
BlsI	GCNGC	1 cut(s)	614
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	2 cut(s)	317, 329
BmeRI	GACNNNNNGTC	1 cut(s)	69
BmgT120I	GGNCC	2 cut(s)	317, 329
BmiI	GGNNCC	2 cut(s)	189, 755
BmrFI	CCNGG	1 cut(s)	705
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	691
BpuEI	CTTGAG	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	631, 703
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 750
Bse1I	ACTGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	705
BseDI	CCNNGG	2 cut(s)	631, 703
BseGI	GGATG	4 cut(s)	92, 437, 526, 556
BseLI	CCNNNNNNNGG	2 cut(s)	326, 750
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	896
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	822
BshFI	GGCC	1 cut(s)	792
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	744
BsiWI	CGTACG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	326, 750
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	792
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	3 cut(s)	118, 340, 707
Bsp68I	TCGCGA	1 cut(s)	822
BspANI	GGCC	1 cut(s)	792
BspFNI	CGCG	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	189, 755
BspMI	ACCTGC	2 cut(s)	328, 430
BspPI	GGATC	2 cut(s)	335, 715
BspT107I	GGYRCC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	631, 703
BssMI	GATC	3 cut(s)	118, 340, 707
BssT1I	CCWWGG	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	1 cut(s)	502
BstC8I	GCNNGC	2 cut(s)	610, 670
BstDEI	CTNAG	1 cut(s)	348
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	92, 437, 526, 556
BstFNI	CGCG	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	674
BstKTI	GATC	3 cut(s)	121, 343, 710
BstMBI	GATC	3 cut(s)	118, 340, 707
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNI	CCWGG	1 cut(s)	705
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	1 cut(s)	703
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	707
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	707
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	792
BtsCI	GGATG	4 cut(s)	92, 437, 526, 556
BtsIMutI	CAGTG	1 cut(s)	498
BtuMI	TCGCGA	1 cut(s)	822
BveI	ACCTGC	2 cut(s)	328, 430
Cac8I	GCNNGC	2 cut(s)	610, 670
CaiI	CAGNNNCTG	1 cut(s)	772
CfoI	GCGC	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	317, 329
Csp6I	GTAC	4 cut(s)	100, 453, 626, 762
CviAII	CATG	6 cut(s)	80, 267, 469, 669, 675, 780
CviJI	RGCY	8 cut(s)	164, 243, 272, 278, 525, 645, 719, 792
CviKI_1	RGCY	8 cut(s)	164, 243, 272, 278, 525, 645, 719, 792
CviQI	GTAC	4 cut(s)	100, 453, 626, 762
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	3 cut(s)	120, 342, 709
DpnII	GATC	3 cut(s)	118, 340, 707
DriI	GACNNNNNGTC	1 cut(s)	69
Eam1105I	GACNNNNNGTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	631
Eco32I	GATATC	1 cut(s)	897
Eco47I	GGWCC	2 cut(s)	317, 329
Eco81I	CCTNAGG	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	2 cut(s)	317, 329
EcoRII	CCWGG	1 cut(s)	703
EcoRV	GATATC	1 cut(s)	897
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	6 cut(s)	83, 270, 472, 672, 678, 783
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	6 cut(s)	79, 266, 468, 668, 674, 779
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	613
FokI	GGATG	4 cut(s)	99, 424, 533, 563
Fsp4HI	GCNGC	1 cut(s)	613
FspAI	RTGCGCAY	1 cut(s)	673
FspBI	CTAG	1 cut(s)	788
FspI	TGCGCA	1 cut(s)	673
GlaI	GCGC	1 cut(s)	673
GluI	GCNGC	1 cut(s)	613
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	1 cut(s)	744
HhaI	GCGC	1 cut(s)	674
Hin1II	CATG	6 cut(s)	83, 270, 472, 672, 678, 783
Hin6I	GCGC	1 cut(s)	672
HinP1I	GCGC	1 cut(s)	672
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	8 cut(s)	144, 234, 376, 690, 769, 776, 817, 960
HpaII	CCGG	1 cut(s)	744
Hpy166II	GTNNAC	6 cut(s)	227, 433, 564, 628, 764, 872
Hpy188I	TCNGA	4 cut(s)	33, 486, 507, 901
Hpy188III	TCNNGA	5 cut(s)	400, 734, 773, 814, 821
Hpy8I	GTNNAC	6 cut(s)	227, 433, 564, 628, 764, 872
HpyAV	CCTTC	1 cut(s)	767
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	7 cut(s)	227, 298, 323, 530, 615, 652, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	6 cut(s)	83, 270, 472, 672, 678, 783
HspAI	GCGC	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	118, 340, 707
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	1 cut(s)	98
MalI	GATC	3 cut(s)	120, 342, 709
MboI	GATC	3 cut(s)	118, 340, 707
MboII	GAAGA	3 cut(s)	255, 691, 904
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	9 cut(s)	67, 75, 91, 104, 256, 307, 747, 841, 945
MlyI	GAGTC	2 cut(s)	243, 770
MnlI	CCTC	6 cut(s)	178, 217, 342, 354, 892, 917
MseI	TTAA	3 cut(s)	114, 447, 966
MslI	CAYNNNNRTG	4 cut(s)	265, 519, 667, 673
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	822
MwoI	GCNNNNNNNGC	1 cut(s)	609
NdeII	GATC	3 cut(s)	118, 340, 707
NlaIII	CATG	6 cut(s)	83, 270, 472, 672, 678, 783
NlaIV	GGNNCC	2 cut(s)	189, 755
NruI	TCGCGA	1 cut(s)	822
NsbI	TGCGCA	1 cut(s)	673
NspI	RCATGY	1 cut(s)	672
PaeI	GCATGC	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	1 cut(s)	819
PfeI	GAWTC	6 cut(s)	144, 376, 690, 769, 817, 960
Pfl23II	CGTACG	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	614
PleI	GAGTC	2 cut(s)	242, 770
PpsI	GAGTC	2 cut(s)	242, 770
PpuMI	RGGWCCY	2 cut(s)	317, 329
PshBI	ATTAAT	1 cut(s)	447
Psp5II	RGGWCCY	2 cut(s)	317, 329
Psp6I	CCWGG	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	703
PspLI	CGTACG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	189, 755
PspPI	GGNCC	2 cut(s)	317, 329
PspPPI	RGGWCCY	2 cut(s)	317, 329
PstNI	CAGNNNCTG	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	707
RruI	TCGCGA	1 cut(s)	822
RsaI	GTAC	4 cut(s)	101, 454, 627, 763
RsaNI	GTAC	4 cut(s)	100, 453, 626, 762
RseI	CAYNNNNRTG	4 cut(s)	265, 519, 667, 673
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	3 cut(s)	114, 447, 966
SatI	GCNGC	1 cut(s)	613
Sau3AI	GATC	3 cut(s)	118, 340, 707
Sau96I	GGNCC	2 cut(s)	317, 329
SchI	GAGTC	2 cut(s)	243, 770
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	1 cut(s)	332
SinI	GGWCC	2 cut(s)	317, 329
SmiMI	CAYNNNNRTG	4 cut(s)	265, 519, 667, 673
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SphI	GCATGC	1 cut(s)	672
Sse9I	AATT	9 cut(s)	67, 75, 91, 104, 256, 307, 747, 841, 945
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	3 cut(s)	160, 432, 942
TasI	AATT	9 cut(s)	67, 75, 91, 104, 256, 307, 747, 841, 945
TfiI	GAWTC	6 cut(s)	144, 376, 690, 769, 817, 960
Tru1I	TTAA	3 cut(s)	114, 447, 966
Tru9I	TTAA	3 cut(s)	114, 447, 966
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	1 cut(s)	612
TspDTI	ATGAA	7 cut(s)	29, 68, 249, 255, 389, 428, 457
TspRI	CASTG	1 cut(s)	505
VneI	GTGCAC	1 cut(s)	225
VpaK11BI	GGWCC	2 cut(s)	317, 329
VspI	ATTAAT	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	324
XapI	RAATTY	4 cut(s)	104, 747, 841, 945
XceI	RCATGY	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.