Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0024224

Physical Location & Seq

Genomic Coordinates Reverse (-)

16519349 .. 16519989

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAACAGACCTGCCAAAGTCGACACATCCCTGATTAATGGTACTTTCAAGGGTTTCATGGAAATCATCTTTCAGAACAATGACACCACTGTTCAGAACTACCATTTGGATGGCTCTGCATTTTTTGTCGTGGGTATGGATGTGGGAGTGTGGACAGAGAATAGCAGAAGCACTTACAACAAATGGGATGACGTTGCTCGCTGCACAACACAGGTCTTCCCTGGATCTTGGACAGCCATATTGGTTGTTCTTGACAATGCCGGAATTTGGAACCTTTGTGCACAGAATCTGGACTCATGGTATCTAGGCCAAGAAGCTTATTTGAGTGTCGTGAATCGCAACCAAAACGAAAATTCTTTGCCTGACAATACCATATATTGTGGACTACTTTCCTCTTTACAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

136

Amino Acids

15.2

Weight (kDa)

4.55

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024224)

Species	Orthologous Gene IDs
malus_domestica	MD10G1151300.v1.1
pyrus_communis	pycom10g13040
rosa_samantha	Rh7CG207900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	264, 352
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw21I	GWGCWC	1 cut(s)	283
Alw44I	GTGCAC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	1 cut(s)	307
ApaLI	GTGCAC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	2 cut(s)	264, 352
AseI	ATTAAT	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	222
BfaI	CTAG	1 cut(s)	305
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	4 cut(s)	26, 115, 145, 193
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	267
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	199
BstF5I	GGATG	4 cut(s)	26, 115, 145, 193
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	224
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	26, 115, 145, 193
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	199
CaiI	CAGNNNCTG	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	2 cut(s)	58, 297
CviJI	RGCY	4 cut(s)	114, 236, 309, 317
CviKI_1	RGCY	4 cut(s)	114, 236, 309, 317
CviQI	GTAC	1 cut(s)	42
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	61, 300
FaiI	YATR	6 cut(s)	59, 137, 239, 298, 374, 376
FatI	CATG	2 cut(s)	57, 296
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	4 cut(s)	13, 122, 152, 200
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	202
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	261
Hin1II	CATG	2 cut(s)	61, 300
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	3 cut(s)	286, 293, 334
HpaII	CCGG	1 cut(s)	261
Hpy166II	GTNNAC	4 cut(s)	22, 153, 281, 383
Hpy188I	TCNGA	2 cut(s)	75, 96
Hpy188III	TCNNGA	3 cut(s)	251, 290, 331
Hpy8I	GTNNAC	4 cut(s)	22, 153, 281, 383
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	119, 204, 281
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	61, 300
Kzo9I	GATC	1 cut(s)	224
LpnPI	CCDG	8 cut(s)	24, 44, 197, 207, 234, 274, 275, 375
Lsp1109I	GCAGC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	192
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	2 cut(s)	264, 352
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	61, 300
NlaIV	GGNNCC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	286, 334
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PshBI	ATTAAT	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	1 cut(s)	224
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	5 cut(s)	13, 195, 216, 276, 319
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	264, 352
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	264, 352
TfiI	GAWTC	2 cut(s)	286, 334
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	17, 46
TspRI	CASTG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	2 cut(s)	264, 352
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.