Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0024224

Physical Location & Seq

Genomic Coordinates Reverse (-)

18610625 .. 18611476

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGACTACGGTGACTGGACAGAGAATAGCAGGGGGACATATAATAAATGGGATGGAATAGCCCGTTCTACAATACAGGTTTATCCTGGGGCATGGACAGCAATCTTGATTTCTTTGGATAATGTTGGAGTCTGGAACATTAGAGCTGAAAATCTCGATTCATGGTATCTTGGCCAAGAAACTTATATCAAGGTCGTCAATCCAGAACCGACTAACAAGACTGAACTCCCCATGCCAGACAATGCCCTATTTTGTGGTGCTCTAAGCAAATTGCAGAAGCCTGAAGACATCTCTTCGGAAGCATCACTCACTATTGGTCAATCAAGGGTGTTCTTCACTCTGCTGATGATCATCTGCACTTTAATTCCCATTTTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009653 GO:0009826 GO:0009932 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016722 GO:0030054 GO:0030312 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048046 GO:0048589 GO:0048856 GO:0048869 GO:0055044 GO:0055114 GO:0060560 GO:0071840 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

4.67

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_2	PF07731	2 - 68	7.8e-15	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0024224)

Species	Orthologous Gene IDs
malus_domestica	MD10G1151300.v1.1
pyrus_communis	pycom10g13040
rosa_samantha	Rh7CG207900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	262
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	87
BclI	TGATCA	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	58
BseJI	GATNNNNATC	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	340
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	58
CviAII	CATG	3 cut(s)	93, 162, 232
CviJI	RGCY	4 cut(s)	62, 146, 174, 280
CviKI_1	RGCY	4 cut(s)	62, 146, 174, 280
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	85
FaeI	CATG	3 cut(s)	96, 165, 235
FaiI	YATR	6 cut(s)	40, 42, 94, 163, 186, 233
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	3 cut(s)	92, 161, 231
FbaI	TGATCA	1 cut(s)	348
FokI	GGATG	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	96, 165, 235
HinfI	GANTC	2 cut(s)	129, 158
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	106, 133, 155, 203
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	274, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	3 cut(s)	96, 165, 235
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	348
LpnPI	CCDG	8 cut(s)	16, 62, 72, 99, 118, 216, 249, 294
LweI	GCATC	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	3 cut(s)	285, 296, 325
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	2 cut(s)	269, 363
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	106
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	3 cut(s)	96, 165, 235
NmuCI	GTSAC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	3 cut(s)	81, 148, 195
SfaNI	GCATC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	269, 363
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	269, 363
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseFI	GTSAC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.